Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_07g0022210 | OGI:07002320 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr07:24348839-24350333 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agtcctcacctcggtagctaatactactttactttattactgtcgttttggtttgcttagcagaatatggttggcgtgagcgagttcgtcggcgggcagctcaactccgccaagagcgcggtggcggccgtggcctccaccgtggcggcggcggccaagccgggcctcgccgcgggggtcggcttcgtgaaggagcagggcgtggggaagtcggcgctggccgtcggcggggccgccgtggccgcctacttcctctggcccacggcggcggtcggcggcgccaccatgaacgcgccgggcgccgccggctacgtcatctcccgcgcggcgttcctggcgaaccccaagctctacttccacctcctgcgcacggtgggcgccaaggcggccgccgccgctttcctgtagggaagaaatggtatccgccgccgccgacgtccgccgctcgctggcgttggcttgctggttcgtgtgtggcgtttggttgagtgagtaatcgccttgctaattaaggagggatttgtgatggagttcatgcttagattactcttgtttggctgtgaatctgtgtgggctagtaattcacggtgtttaggcgacgtggttatatgctagtacatccatggtcatgtgtaataaggtgccgtgtaataagtttttgtggtaattaagtatgttgccgtttaaacttatgtaggaatttaacatgtctaaaccctattatccaaacaaatatcccttggaacacagggtacttgaagaaattttggaaatcctacaaaattcctttgaattattattccaaaaaaaatcatttgaattggcttgaaacataaaagaaatttagagcctctttgaagtaaatgatttacagaggaatttcatataattgaaattttatagaaagtttttttatttggccttttgattaaaaggatttgagttttccaaaccatatatatacaattcctatagaatattggtctatattgcacatccagtaaattcaaaggtgactgaaaattccaacgatttcaggcaggacaatccgctaatacgagtattggcatgcaaagatggtcgttctcgatcttgagggtcggccgatggcggactggaacgttgctctacgcgcctttctttcttgccagctgctctaggcctctgccggtctgccccctgcgttgctcccactggacccgcctccgtcgcctgccatcgcggccatggggaagtgccgagccacagcgagaggattgtggccaaactcgcgctcgacggcccgagtcatacggtctcgtgtgcgcagcacaatctgatatgcaagcttgggttggtgtctaaggagggtcctgtttaaatcgaggcggttgcggcttacaacgtcatcgccctatcttcgctcttctccagctccctgcctagacgcaggccggagtgtagtgggtttccatacccctccctccctcgtggtaggagttttctttttctgtag
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| CDS seq | atggtatccgccgccgccgacgtccgccgctcgctggcgttggcttgctggttcgtgtgtggcgtttggttgactgctctaggcctctgccggtctgccccctgcgttgctcccactggacccgcctccgtcgcctgccatcgcggccatggggaagtgccgagccacagcgagaggattgtggccaaactcgcgctcgacggcccgagtcatacggtctcgtgtgcgcagcacaatctgatatgcaagcttgggttggtgtctaaggagggtcctgcggttgcggcttacaacgtcatcgccctatcttcgctcttctccagctccctgcctagacgcaggccggagtgtagtgggtttccatacccctccctccctcgtggtaggagttttctttttctgtag
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| Protein seq | MVSAAADVRRSLALACWFVCGVWLTALGLCRSAPCVAPTGPASVACHRGHGEVPSHSERIVAKLALDGPSHTVSCAQHNLICKLGLVSKEGPAVAAYNVIALSSLFSSSLPRRRPECSGFPYPSLPRGRSFLFL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0022210 | OsNaBo_07g0022210.01 | Chr07 | 24348839 | 24349537 | + | NAM | ||
| CDS seq | atggttggcgtgagcgagttcgtcggcgggcagctcaactccgccaagagcgcggtggcggccgtggcctccaccgtggcggcggcggccaagccgggcctcgccgcgggggtcggcttcgtgaaggagcagggcgtggggaagtcggcgctggccgtcggcggggccgccgtggccgcctacttcctctggcccacggcggcggtcggcggcgccaccatgaacgcgccgggcgccgccggctacgtcatctcccgcgcggcgttcctggcgaaccccaagctctacttccacctcctgcgcacggtgggcgccaaggcggccgccgccgctttcctgtag
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| Protein seq | MVGVSEFVGGQLNSAKSAVAAVASTVAAAAKPGLAAGVGFVKEQGVGKSALAVGGAAVAAYFLWPTAAVGGATMNAPGAAGYVISRAAFLANPKLYFHLLRTVGAKAAAAAFL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0022210 | OsNaBo_07g0022210.02 | Chr07 | 24349254 | 24350333 | + | NAM | ||
| CDS seq | atggtatccgccgccgccgacgtccgccgctcgctggcgttggcttgctggttcgtgtgtggcgtttggttgactgctctaggcctctgccggtctgccccctgcgttgctcccactggacccgcctccgtcgcctgccatcgcggccatggggaagtgccgagccacagcgagaggattgtggccaaactcgcgctcgacggcccgagtcatacggtctcgtgtgcgcagcacaatctgatatgcaagcttgggttggtgtctaaggagggtcctgcggttgcggcttacaacgtcatcgccctatcttcgctcttctccagctccctgcctagacgcaggccggagtgtagtgggtttccatacccctccctccctcgtggtaggagttttctttttctgtag
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| Protein seq | MVSAAADVRRSLALACWFVCGVWLTALGLCRSAPCVAPTGPASVACHRGHGEVPSHSERIVAKLALDGPSHTVSCAQHNLICKLGLVSKEGPAVAAYNVIALSSLFSSSLPRRRPECSGFPYPSLPRGRSFLFL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 5.524205 | 11.541440 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0028020 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0028060 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027840 | SBH | 0.0 | 3.604611 | 4.984947 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027940 | SBH | 22.818420 | 29.041727 | 19.900330 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027720 | SBH | 0.000000 | 0.885379 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G022180 | RBH | 1.494461 | 1.240484 | 7.734855 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
