Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0027840 | OGI:07002320 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:28521366-28524138 | ||||||||
| Gene Symbol | EULD2, OsEULD2, EULD2, EULD1A, OsEULD1a, EULD1a | ||||||||||
| DNA seq | aataccagcgagacaaccagacgccggcccttggaagctagctagcatgttcagccaccatgggcacggccacggccaataccagcctccggcgactggtccccagcacgagccgacgttcaagatcttctgccgcgccgacgaggggtactgccttaccgtccgccacgacgccgtcgtcctcgcgccaaccaacccccgcgacgactgccaggcaccaccaccataatattttcttcttctgctaggctatgtggctctgtgctcatctcttaattactagcttctctctaatccggaccatggcatgcagcactggtacaaggacatgcggcacagcacgagggtgaaggacgaggagggccacccggcgttcgcgctcgtcaaccgcgccaccggcctcgccgtcaagcactcgctcggccaatcccaccccgtatgtcgatcaccattagttcatccacgcatgcagtcttcgcgcgccatcttaactgttttacatgcatgatcgatcgacgctcctgtcctgatgcaggtgaagctggtgccgtacaacccagagtaccaggacgagtcggtgctgtggaccgagagcaaggacgtcggccatggcttccgctgcatccgcatggtcaacaacatctacctcaacttggacgccttccacggcgacaagtcccacggcggcgtgcacgacggcaccaccgtcgtgctctgggagtggtgcaagggcgacaaccagtgctggaagatcctcccctggggccccgaggcgtacgcgccgccgccgccgccagcatacgggcaccaggcatacccgccgccgccgcccaaccgtgaacctggccacggctaccaccccgcacctgcgttctatccgccgcagccgccaccgagccacgatgagccgggctacggctaccatccaccgccgggcggaccacccggtgcagggtacggcaaccggctgccccgcgcgctggcgtcggagcccaccgtgcgcatcctgtgcagggccgacgaggcgtacagcctcaccgtcaggaacggcgccgtctgccttgcaccaaccaatcccagggatgacttccaggttatttccgttgcatacaattccatctcaaattcttaacaccgatagatcaactccatcgtgatcttgtctaactattctaatcatgttcaaatccgatttgcagcactgggtgaaggacatgaggcacagcacgagcatcaaggacgaggaaggctacccggcgttcgcgctggtgaacaaggccaccggggaagccatcaagcactccctcggacagagccaccctgtatgtacatacatacatacatacatcttcttcattagaaaattaattcagtctgtttcacatatgtcaaaaaatcagtcaacgtagtggttggagcgtcgtagtagtagcaatcaacgcttacgatttctggaatggtgtcacatgatgtgaatttgtcgcaaaaccactactacactagtagttaatgatctgacacgttcgtctgcacgcaggttaggctggtgccatacaacccggagtacctggacgagtcggtgctgtggacggagagcaaggacgtcggccatggcttccgctgcgtccgcatggtgaacaacatctacctcaactttgacgccttccatggcgacaaggaccacggcggcgtccacgacggcaccaccgtcgtgctctgggagtggtgtaagggcgacaaccagcgctggaagatcctcccctggtgtaagtaattatcaccgatatatagcttaattagtcagaatctttcaactgacattgtttggttttgttccttctgacgcagaaatcgagagaccgtcaacaaaagcatcgatcgatccgtcacctgtgcttgcatttggcactgttcgagttcgaccatgcatgcatgtcgtgttactgttgcgtgtcctgtgtttatgtcactgcagaataaatcagggtctcgctgtcagcagagatcagatggccccctccctgctgtttggtgtggatccatgcgtatatgcgcatcttttgtacgaagttctactagttcatgtcatgagatgcctgtctactctgcccagtttgcttctggcgagatgagtactgctccggtttgatactctactacagtactatgcggttgatctatgtttggtacatctgcttcgacgactcaattatgacaaatggttaatcccgatgacaccacacctaatacccgcgattaattccgctagctataaaaggccgtgagtaattaagtcaacactgaagattattgtcatattattgcacagagcaggtttgttaagatcgttgtgatcataaaattaaatcaaaatttccgtgtaacaacgccgctcttcgcgccttcctcaccagctgctccaggccactccctcctgcgctcctcccgccgcctttgccgctgccgcctctcgccgccaaggcggtggaggttgtgccgaagcgcagtgagcgtatcgctgctaagatggcacttgaggcgcttgaggggccgatccacgcagtgtcgcgcgcccagcgcaacctgatgcggaagctcggcctagttccggagaggggcccggtcacggccgaggcgatcgcggcttacaacgccctcttctccaagccactttcccaggagcacatcatcgcgctctcctcgctcttctccggctccttgcccccgggcaaggctgcggaggcgttggtcgtgtgcggctgatcggtttctt
More
|
||||||||||
| CDS seq | atgcagcactggtacaaggacatgcggcacagcacgagggtgaaggacgaggagggccacccggcgttcgcgctcgtcaaccgcgccaccggcctcgccgtcaagcactcgctcggccaatcccaccccgtgaagctggtgccgtacaacccagagtaccaggacgagtcggtgctgtggaccgagagcaaggacgtcggccatggcttccgctgcatccgcatggtcaacaacatctacctcaacttggacgccttccacggcgacaagtcccacggcggcgtgcacgacggcaccaccgtcgtgctctgggagtggtgcaagggcgacaaccagtgctggaagatcctcccctggggccccgaggcgtacgcgccgccgccgccgccagcatacgggcaccaggcatacccgccgccgccgcccaaccgtgaacctggccacggctaccaccccgcacctgcgttctatccgccgcagccgccaccgagccacgatgagccgggctacggctaccatccaccgccgggcggaccacccggtgcagggtacggcaaccggctgccccgcgcgctggcgtcggagcccaccgtgcgcatcctgtgcagggccgacgaggcgtacagcctcaccgtcaggaacggcgccgtctgccttgcaccaaccaatcccagggatgacttccagcactgggtgaaggacatgaggcacagcacgagcatcaaggacgaggaaggctacccggcgttcgcgctggtgaacaaggccaccggggaagccatcaagcactccctcggacagagccaccctgttaggctggtgccatacaacccggagtacctggacgagtcggtgctgtggacggagagcaaggacgtcggccatggcttccgctgcgtccgcatggtgaacaacatctacctcaactttgacgccttccatggcgacaaggaccacggcggcgtccacgacggcaccaccgtcgtgctctgggagtggtgtaagggcgacaaccagcgctggaagatcctcccctggtgtaaaaatcgagagaccgtcaacaaaagcatcgatcgatccgtcacctgtgcttgcatttggcactgttcgaatcgttgtgatcataaaattaaatcaaaatttccgtgtaacaacgccgctcttcgcgccttcctcaccagctgctccaggccactccctcctgcgctcctcccgccgcctttgccgctgccgcctctcgccgccaaggcggtggaggttgtgccgaagcgcagtgagcgtatcgctgctaagatggcacttgaggcgcttgaggggccgatccacgcagtgtcgcgcgcccagcgcaacctgatgcggaagctcggcctagttccggagaggggcccggtcacggccgaggcgatcgcggcttacaacgccctcttctccaagccactttcccaggagcacatcatcgcgctctcctcgctcttctccggctccttgcccccgggcaaggctgcggaggcgttggtcgtgtgcggctga
More
|
||||||||||
| Protein seq | MQHWYKDMRHSTRVKDEEGHPAFALVNRATGLAVKHSLGQSHPVKLVPYNPEYQDESVLWTESKDVGHGFRCIRMVNNIYLNLDAFHGDKSHGGVHDGTTVVLWEWCKGDNQCWKILPWGPEAYAPPPPPAYGHQAYPPPPPNREPGHGYHPAPAFYPPQPPPSHDEPGYGYHPPPGGPPGAGYGNRLPRALASEPTVRILCRADEAYSLTVRNGAVCLAPTNPRDDFQHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLDESVLWTESKDVGHGFRCVRMVNNIYLNFDAFHGDKDHGGVHDGTTVVLWEWCKGDNQRWKILPWCKNRETVNKSIDRSVTCACIWHCSNRCDHKIKSKFPCNNAALRAFLTSCSRPLPPALLPPPLPLPPLAAKAVEVVPKRSERIAAKMALEALEGPIHAVSRAQRNLMRKLGLVPERGPVTAEAIAAYNALFSKPLSQEHIIALSSLFSGSLPPGKAAEALVVCG |
||||||||||
| Function | Ricin B-like lectin R40G2 [UniProtKB/Swiss-Prot:Q6Z4N6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0027840 | OsCMeo_07g0027840.01 | Chr07 | 28521673 | 28524138 | + | NAM | ||
| CDS seq | atgcagcactggtacaaggacatgcggcacagcacgagggtgaaggacgaggagggccacccggcgttcgcgctcgtcaaccgcgccaccggcctcgccgtcaagcactcgctcggccaatcccaccccgtgaagctggtgccgtacaacccagagtaccaggacgagtcggtgctgtggaccgagagcaaggacgtcggccatggcttccgctgcatccgcatggtcaacaacatctacctcaacttggacgccttccacggcgacaagtcccacggcggcgtgcacgacggcaccaccgtcgtgctctgggagtggtgcaagggcgacaaccagtgctggaagatcctcccctggggccccgaggcgtacgcgccgccgccgccgccagcatacgggcaccaggcatacccgccgccgccgcccaaccgtgaacctggccacggctaccaccccgcacctgcgttctatccgccgcagccgccaccgagccacgatgagccgggctacggctaccatccaccgccgggcggaccacccggtgcagggtacggcaaccggctgccccgcgcgctggcgtcggagcccaccgtgcgcatcctgtgcagggccgacgaggcgtacagcctcaccgtcaggaacggcgccgtctgccttgcaccaaccaatcccagggatgacttccagcactgggtgaaggacatgaggcacagcacgagcatcaaggacgaggaaggctacccggcgttcgcgctggtgaacaaggccaccggggaagccatcaagcactccctcggacagagccaccctgttaggctggtgccatacaacccggagtacctggacgagtcggtgctgtggacggagagcaaggacgtcggccatggcttccgctgcgtccgcatggtgaacaacatctacctcaactttgacgccttccatggcgacaaggaccacggcggcgtccacgacggcaccaccgtcgtgctctgggagtggtgtaagggcgacaaccagcgctggaagatcctcccctggtgtaaaaatcgagagaccgtcaacaaaagcatcgatcgatccgtcacctgtgcttgcatttggcactgttcgaatcgttgtgatcataaaattaaatcaaaatttccgtgtaacaacgccgctcttcgcgccttcctcaccagctgctccaggccactccctcctgcgctcctcccgccgcctttgccgctgccgcctctcgccgccaaggcggtggaggttgtgccgaagcgcagtgagcgtatcgctgctaagatggcacttgaggcgcttgaggggccgatccacgcagtgtcgcgcgcccagcgcaacctgatgcggaagctcggcctagttccggagaggggcccggtcacggccgaggcgatcgcggcttacaacgccctcttctccaagccactttcccaggagcacatcatcgcgctctcctcgctcttctccggctccttgcccccgggcaaggctgcggaggcgttggtcgtgtgcggctga
More
|
|||||||
| Protein seq | MQHWYKDMRHSTRVKDEEGHPAFALVNRATGLAVKHSLGQSHPVKLVPYNPEYQDESVLWTESKDVGHGFRCIRMVNNIYLNLDAFHGDKSHGGVHDGTTVVLWEWCKGDNQCWKILPWGPEAYAPPPPPAYGHQAYPPPPPNREPGHGYHPAPAFYPPQPPPSHDEPGYGYHPPPGGPPGAGYGNRLPRALASEPTVRILCRADEAYSLTVRNGAVCLAPTNPRDDFQHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLDESVLWTESKDVGHGFRCVRMVNNIYLNFDAFHGDKDHGGVHDGTTVVLWEWCKGDNQRWKILPWCKNRETVNKSIDRSVTCACIWHCSNRCDHKIKSKFPCNNAALRAFLTSCSRPLPPALLPPPLPLPPLAAKAVEVVPKRSERIAAKMALEALEGPIHAVSRAQRNLMRKLGLVPERGPVTAEAIAAYNALFSKPLSQEHIIALSSLFSGSLPPGKAAEALVVCG
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0027840 | OsCMeo_07g0027840.02 | Chr07 | 28521366 | 28523544 | + | IsoSeq | ||
| CDS seq | atggcgacaaggaccacggcggcgtccacgacggcaccaccgtcgtgctctgggagtggtgtaagggcgacaaccagcgctggaagatcctcccctggtaaatcgagagaccgtcaacaaaagcatcgatcgatccgtcacctgtgcttgcatttggcactgttcgagttcgaccatgcatgcatgtcgtgttactgttgcgtgtcctgtgtttatgtcactgca
More
|
|||||||
| Protein seq | MATRTTAASTTAPPSCSGSGVRATTSAGRSSPGKSRDRQQKHRSIRHLCLHLALFEFDHACMSCYCCVSCVYVTA |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr07 | 28523131 | 28523214 | + | OsCMeo_07g0027840.01 | OsCMeo_07g0027840.02,OsCMeo_07g0027840.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 3.604611 | 4.984947 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0683600 | RBH | 0.716066 | 2.434347 | 9.095756 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g48460 | SBH | 0.404712 | 1.553467 | 2.066215 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0683600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0028010 | RBH | 0.0 | 0.0 | 0.788490 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0028050 | RBH | 0.777440 | 0.0 | 1.757496 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016150 | SBH | 0.521822 | 153.460571 | 23.194981 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027640 | SBH | 0.088809 | 0.036607 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027940 | RBH | 22.818420 | 29.041727 | 19.900330 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0471400 | RBH | 4.509084 | 7.216408 | 0.352129 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028370 | SBH | 0.297460 | 0.098820 | 0.536594 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0485300 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0027660 | RBH | 0.426089 | 0.215069 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0028110 | SBH | 2.645105 | 9.503336 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027830 | SBH | 7.324739 | 7.845410 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0028160 | RBH | 1.669047 | 0.304100 | 2.971492 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027720 | SBH | 0.000000 | 0.885379 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027800 | RBH | 0.647617 | 0.560445 | 4.268677 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027540 | SBH | 1.633663 | 7.411971 | 11.208426 |
