Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g48460 | OGI:07002320 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:28992714-28994935 | ||||||||
| Gene Symbol | EULD2, OsEULD2, EULD2 | ||||||||||
| DNA seq | TCGAATACCAGCGAGACAACCAGACGCCGGCCCTTGGAAGCTAGCTAGCATGTTCAGCCACCATGGGCACGGCCACGGCCAATACCAGCCTCCGGCGACTGGTCCCCAGCACGAGCCGACGTTCAAGATCTTCTGCCGCGCCGACGAGGGGTACTGCCTTACCGTCCGCCACGACGCCGTCGTCCTCGCGCCAACCAACCCCCGCGACGACTGCCAGGCACCACCACCATAATATTTTCTTCTTCTGCTATGCTATGTGGCTCTGTGCTCATCTCTTAATTACTAGCTTCTCTCTAATCCGGACCATGGCATGCAGCACTGGTACAAGGACATGCGGCACAGCACGAGGGTGAAGGACGAGGAGGGCCACCCGGCGTTCGCGCTCGTCAATCGCGCCACCGGCCTCGCCGTCAAGCACTCGCTCGGCCAATCCCACCCCGTATGTCAATCACCATTAGTTCATCCACGCATGCAGTCTTCGCGCGCCATCTTAACTGTTTTACATGCATGATCGATCGACGCTCCTGTCCTGATGCAGGTGAAGCTGGTGCCGTACAACCCAGAGTACCAGGACGAGTCGGTGCTGTGGACCGAGAGCAAGGACGTCGGCCATGGCTTCCGCTGCATCCGCATGGTCAACAACATCTACCTCAACTTGGACGCCTTCCACGGCGACAAGTCCCACGGCGGCGTGCACGACGGCACCACCGTCGTGCTCTGGGAGTGGTGCAAGGGCGACAACCAGTGCTGGAAGATCCTCCCCTGGGGCCCCGAGGCGTACGCGCCGCCGCCGCCGCCAGCATACGGGCACCAGGCATACCCGCCGCCGCCGCCCAACCGTGAACCTGGCCACGGCTACCACCCCGCACCTGCGTTCTACCCGCCGCAGCCGCCACCGAGCCACGATGAGCCGGGCTACGGCTACCGTCCACCGCCGGTCGGACCACCCGGTGCAGGGTACGGCAACCGGCTGCCCCGCGCGCTGGCGTCGGAGCCCACCGTGCGCATCCTGTGCAGGGCCGACGAGGCGTACAGCCTCACCGTCAGGAACGGCGCCGTCTGCCTTGCACCAACCAATCCCAGGGATGACTTCCAGGTTATTTCCGTTGCATACAATTCCATCTCAAATTCTTAACACCGATAGATCAACTCCATCGTGATCTTGTCTAACTATTCTAATCATGTTCAAATCCGATTTGCAGCACTGGGTGAAGGACATGAGGCACAGCACGAGCATCAAGGACGAGGAAGGCTACCCGGCGTTCGCGCTGGTGAACAAGGCCACCGGGGAAGCCATCAAGCACTCCCTCGGACAGAGCCACCCTGTATGTACATACATACATACATACATCTTCTTCATTAGATAATTAATTCAGTCTGTTTCATATATGTCAAAAAATCAGTCAACGTAGTGGTTGGAGCGTCGTAGTAGTAGCAATCAACGCTTACGATTTCTGGAATGGCGTCACATGATGTGAATTTGTCGCAAAACCACTACTACACTAGTAGTTGATGATCTGACACGTTCGTCTGCACGCAGGTTAGGCTGGTGCCATACAACCCGGAGTACCTGGACGAGTCGGTGCTGTGGACGGAGAGCAAGGACGTCGGCCATGGCTTCCGCTGCGTCCGCATGGTGAACAACATCTACCTCAACTTTGACGCCTTCCATGGCGACAAGGACCACGGCGGCGTCCACGACGGCACCACCGTCGTGCTCTGGGAGTGGTGTAAGGGCGACAACCAGCGCTGGAAGATCCTCCCCTGGTGTAAGTAATTATCACCGATATATAGCTTAATTAGTCAGAATCTTTCAACTGACATTGTTTGGTTTTGTTCCTTCTGACGCAGAAATCGAGAGACCGTCAACAAAAGCATCGATCGATCCGTCACCTGTGCTTGCATTTGGCACTGTTCGAGTTCGACCATGCATGCATGTCGTGTTACTGTTGCGTGTCCTGTGTTTATGTCACTGCAGAATAAATCAGGGTCTCGCTGTCAGCAGAGATCAGATGACCCCCTCCCTGCTATTTGGTGTGGATCCATGCGTATATGCGCATCTTTTGTACGAAGTTCTACTAGTTCATGTCATGAGATGCCTGTCTACTCTGCCCAGTTTGCTTCTGGCGAGATGAGTACTGCTCCGGTTTGATACTCTACTACAGTACTATGCGGTTGATCTATGTTTGGTACATCTGCTTCGACGACTCAATTATGACAAA
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| CDS seq | ATGTTCAGCCACCATGGGCACGGCCACGGCCAATACCAGCCTCCGGCGACTGGTCCCCAGCACGAGCCGACGTTCAAGATCTTCTGCCGCGCCGACGAGGGGTACTGCCTTACCGTCCGCCACGACGCCGTCGTCCTCGCGCCAACCAACCCCCGCGACGACTGCCAGCACTGGTACAAGGACATGCGGCACAGCACGAGGGTGAAGGACGAGGAGGGCCACCCGGCGTTCGCGCTCGTCAATCGCGCCACCGGCCTCGCCGTCAAGCACTCGCTCGGCCAATCCCACCCCGTGAAGCTGGTGCCGTACAACCCAGAGTACCAGGACGAGTCGGTGCTGTGGACCGAGAGCAAGGACGTCGGCCATGGCTTCCGCTGCATCCGCATGGTCAACAACATCTACCTCAACTTGGACGCCTTCCACGGCGACAAGTCCCACGGCGGCGTGCACGACGGCACCACCGTCGTGCTCTGGGAGTGGTGCAAGGGCGACAACCAGTGCTGGAAGATCCTCCCCTGGGGCCCCGAGGCGTACGCGCCGCCGCCGCCGCCAGCATACGGGCACCAGGCATACCCGCCGCCGCCGCCCAACCGTGAACCTGGCCACGGCTACCACCCCGCACCTGCGTTCTACCCGCCGCAGCCGCCACCGAGCCACGATGAGCCGGGCTACGGCTACCGTCCACCGCCGGTCGGACCACCCGGTGCAGGGTACGGCAACCGGCTGCCCCGCGCGCTGGCGTCGGAGCCCACCGTGCGCATCCTGTGCAGGGCCGACGAGGCGTACAGCCTCACCGTCAGGAACGGCGCCGTCTGCCTTGCACCAACCAATCCCAGGGATGACTTCCAGCACTGGGTGAAGGACATGAGGCACAGCACGAGCATCAAGGACGAGGAAGGCTACCCGGCGTTCGCGCTGGTGAACAAGGCCACCGGGGAAGCCATCAAGCACTCCCTCGGACAGAGCCACCCTGTTAGGCTGGTGCCATACAACCCGGAGTACCTGGACGAGTCGGTGCTGTGGACGGAGAGCAAGGACGTCGGCCATGGCTTCCGCTGCGTCCGCATGGTGAACAACATCTACCTCAACTTTGACGCCTTCCATGGCGACAAGGACCACGGCGGCGTCCACGACGGCACCACCGTCGTGCTCTGGGAGTGGTGTAAGGGCGACAACCAGCGCTGGAAGATCCTCCCCTGGTAA
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| Protein seq | MFSHHGHGHGQYQPPATGPQHEPTFKIFCRADEGYCLTVRHDAVVLAPTNPRDDCQHWYKDMRHSTRVKDEEGHPAFALVNRATGLAVKHSLGQSHPVKLVPYNPEYQDESVLWTESKDVGHGFRCIRMVNNIYLNLDAFHGDKSHGGVHDGTTVVLWEWCKGDNQCWKILPWGPEAYAPPPPPAYGHQAYPPPPPNREPGHGYHPAPAFYPPQPPPSHDEPGYGYRPPPVGPPGAGYGNRLPRALASEPTVRILCRADEAYSLTVRNGAVCLAPTNPRDDFQHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLDESVLWTESKDVGHGFRCVRMVNNIYLNFDAFHGDKDHGGVHDGTTVVLWEWCKGDNQRWKILPW |
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| Function | Ricin B-like lectin R40C1 [UniProtKB/Swiss-Prot:Q10M12] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g48460 | LOC_Os07g48460.1 | Chr07 | 28992714 | 28994935 | + | MSU_osa1r7 | ||
| CDS seq | ATGTTCAGCCACCATGGGCACGGCCACGGCCAATACCAGCCTCCGGCGACTGGTCCCCAGCACGAGCCGACGTTCAAGATCTTCTGCCGCGCCGACGAGGGGTACTGCCTTACCGTCCGCCACGACGCCGTCGTCCTCGCGCCAACCAACCCCCGCGACGACTGCCAGCACTGGTACAAGGACATGCGGCACAGCACGAGGGTGAAGGACGAGGAGGGCCACCCGGCGTTCGCGCTCGTCAATCGCGCCACCGGCCTCGCCGTCAAGCACTCGCTCGGCCAATCCCACCCCGTGAAGCTGGTGCCGTACAACCCAGAGTACCAGGACGAGTCGGTGCTGTGGACCGAGAGCAAGGACGTCGGCCATGGCTTCCGCTGCATCCGCATGGTCAACAACATCTACCTCAACTTGGACGCCTTCCACGGCGACAAGTCCCACGGCGGCGTGCACGACGGCACCACCGTCGTGCTCTGGGAGTGGTGCAAGGGCGACAACCAGTGCTGGAAGATCCTCCCCTGGGGCCCCGAGGCGTACGCGCCGCCGCCGCCGCCAGCATACGGGCACCAGGCATACCCGCCGCCGCCGCCCAACCGTGAACCTGGCCACGGCTACCACCCCGCACCTGCGTTCTACCCGCCGCAGCCGCCACCGAGCCACGATGAGCCGGGCTACGGCTACCGTCCACCGCCGGTCGGACCACCCGGTGCAGGGTACGGCAACCGGCTGCCCCGCGCGCTGGCGTCGGAGCCCACCGTGCGCATCCTGTGCAGGGCCGACGAGGCGTACAGCCTCACCGTCAGGAACGGCGCCGTCTGCCTTGCACCAACCAATCCCAGGGATGACTTCCAGCACTGGGTGAAGGACATGAGGCACAGCACGAGCATCAAGGACGAGGAAGGCTACCCGGCGTTCGCGCTGGTGAACAAGGCCACCGGGGAAGCCATCAAGCACTCCCTCGGACAGAGCCACCCTGTTAGGCTGGTGCCATACAACCCGGAGTACCTGGACGAGTCGGTGCTGTGGACGGAGAGCAAGGACGTCGGCCATGGCTTCCGCTGCGTCCGCATGGTGAACAACATCTACCTCAACTTTGACGCCTTCCATGGCGACAAGGACCACGGCGGCGTCCACGACGGCACCACCGTCGTGCTCTGGGAGTGGTGTAAGGGCGACAACCAGCGCTGGAAGATCCTCCCCTGGTAA
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| Protein seq | MFSHHGHGHGQYQPPATGPQHEPTFKIFCRADEGYCLTVRHDAVVLAPTNPRDDCQHWYKDMRHSTRVKDEEGHPAFALVNRATGLAVKHSLGQSHPVKLVPYNPEYQDESVLWTESKDVGHGFRCIRMVNNIYLNLDAFHGDKSHGGVHDGTTVVLWEWCKGDNQCWKILPWGPEAYAPPPPPAYGHQAYPPPPPNREPGHGYHPAPAFYPPQPPPSHDEPGYGYRPPPVGPPGAGYGNRLPRALASEPTVRILCRADEAYSLTVRNGAVCLAPTNPRDDFQHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLDESVLWTESKDVGHGFRCVRMVNNIYLNFDAFHGDKDHGGVHDGTTVVLWEWCKGDNQRWKILPW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.404712 | 1.553467 | 2.066215 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0683900 | RBH | 54.928452 | 59.122253 | 58.250732 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21040 | SBH | 1.859887 | 2.507835 | 7.914575 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0683900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0028030 | RBH | 25.730150 | 53.791508 | 45.179119 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0028070 | RBH | 15.555313 | 23.487015 | 67.638077 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027850 | RBH | 6.684782 | 97.621376 | 46.148956 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027650 | RBH | 4.285192 | 3.331620 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027930 | RBH | 4.450695 | 4.311213 | 2.215558 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0471400 | RBH | 4.509084 | 7.216408 | 0.352129 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028380 | RBH | 5.696094 | 10.014267 | 8.830544 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0485300 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0027670 | RBH | 5.651822 | 1.008145 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0028120 | RBH | 13.070607 | 122.927681 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027840 | RBH | 133.570053 | 208.551559 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0028160 | RBH | 1.669047 | 0.304100 | 2.971492 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027730 | RBH | 0.252217 | 74.305077 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027810 | RBH | 9.257521 | 0.0 | 18.669134 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027550 | RBH | 13.135578 | 73.961311 | 59.728306 |
