Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0027670 | OGI:07002320 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:30018020-30020055 | ||||||||
| Gene Symbol | EULD2, OsEULD2, EULD2, EULD1A, OsEULD1a, EULD1a | ||||||||||
| DNA seq | gcatcatcgctcgcagtcgcagcacaaaaacatttctctcgcgagtcgcgagttgcaccgatcgaattaagggtcgaagatgtttgggttcgggcaccaccacaaccaggcaccggcggcgccgtcggacccgaaccagatcttcaagatcttctgccgcgccaacgagaactactgcctcaccgtccgcgacggcgccgtcgtcctcgcccccgtcaaccccaaggacgagcaccaggtcaggtcccccttcttatatatgccttttcttttgtttctatattcgatcggattttgatgtatactgaaatggaatgaattgaaatgcagcactggttcaaggacatgaggttcagcaccaaggtgaaggacggggagggcatgccggcgttcgccctcgtcaacaaggccaccggactcgccgtcaagcactccctcggccagtcccaccccgtaatactatatttctattttgctgctagctttgtgcgtgctgccatggaagatcgtagaacgttgacttcgatgtcatggactcatggcgggtgatgggtgtgcaggtgaagcttgtgccgttcaacccggagtacgaggacgcgtcggtgctgtggacggagagcaaggacgtcggcaagggcttccgctgcatccgcatggtcaacaacacccgcctcaacttggacgccttccacggcgacaaggaccacggcggcgtccgcgacggcaccaccgtcgtcctctgggagtggtgcaagggcgacaaccagagctggaagatcctcccctggggccccgaggctcactcctcctcccccggcgccgccaccgcctgcaccatcggcggcgtccccgtccacaccgtccgcgtcttctccgccgcaggcgaggactactgcctcaccgtccgcaacggcaccgcctgcctcgcccccaagaaccccagggacgactaccaggtacgtattctcctcttaattatatactactcttcagatagagaaaaaccttgagagatttgtggttgtggtttgtagcactggatcaaggacatgaggcacagcaacaagatcagggacgaggaaggctacccggcgttcgcgctggtcaacaaggtcaccggcgaagccatcaagcactccaccggacagggccacccggtgagcaaatcttttcttacaaaataaatattttcttacatatgcaacgaatctctgaatcacaacgaacgattttctctgcgcatgcaggtgaagctggttccctacaacccagagtaccaggacgagtctgtgctgtggacggagagcaaggatgtgggcaagggcttccgctgcatccgcatggtgaacaacatctacctcaacttcgacgccttccatggcgacaaggatcacggcggcatccacgatggcaccgagatcgtgctgtggaagtggtgcgagggtgacaaccagcgctggaagatcctcccctggtgtaagttccaccgctaacaatgcacaatgccatcgctgatcgattaatttccttcggatcctctgaagaaatcagagattctgacacttggattgctgcttctttgcatctgcagagattccggggagggggagctgcattgcattgccatcgtcgtcgcgtctgctctgcttctactctagctaataatttgatcgatctgctaccgaaataagaccgtgttcgttcgttcgatcgatcggagtatggcagtcaatggtgtccgtccgtcctcgagtttgtgtcagtgtgtgtccttttgcgagccagtgattgctatgagatgaaacagtgggtgatgtaagtgcaggaggaggggccatatgattcagaaatctgatgcaactcatcttgctttcccctgtactctctacttttcgtatgcctaatgaatgaattatgaatggctcatttgtctcgaccctgttgtttccccttcttctgtttgtgacgtgtaattttgctgaaaaaaaaggcgtggtactggaacacgttctccaagtcataatgatgaaacaaaa
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| CDS seq | atgtttgggttcgggcaccaccacaaccaggcaccggcggcgccgtcggacccgaaccagatcttcaagatcttctgccgcgccaacgagaactactgcctcaccgtccgcgacggcgccgtcgtcctcgcccccgtcaaccccaaggacgagcaccagcactggttcaaggacatgaggttcagcaccaaggtgaaggacggggagggcatgccggcgttcgccctcgtcaacaaggccaccggactcgccgtcaagcactccctcggccagtcccaccccgtgaagcttgtgccgttcaacccggagtacgaggacgcgtcggtgctgtggacggagagcaaggacgtcggcaagggcttccgctgcatccgcatggtcaacaacacccgcctcaacttggacgccttccacggcgacaaggaccacggcggcgtccgcgacggcaccaccgtcgtcctctgggagtggtgcaagggcgacaaccagagctggaagatcctcccctggggccccgaggctcactcctcctcccccggcgccgccaccgcctgcaccatcggcggcgtccccgtccacaccgtccgcgtcttctccgccgcaggcgaggactactgcctcaccgtccgcaacggcaccgcctgcctcgcccccaagaaccccagggacgactaccagcactggatcaaggacatgaggcacagcaacaagatcagggacgaggaaggctacccggcgttcgcgctggtcaacaaggtcaccggcgaagccatcaagcactccaccggacagggccacccggtgaagctggttccctacaacccagagtaccaggacgagtctgtgctgtggacggagagcaaggatgtgggcaagggcttccgctgcatccgcatggtgaacaacatctacctcaacttcgacgccttccatggcgacaaggatcacggcggcatccacgatggcaccgagatcgtgctgtggaagtggtgcgagggtgacaaccagcgctggaagatcctcccctggtag
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| Protein seq | MFGFGHHHNQAPAAPSDPNQIFKIFCRANENYCLTVRDGAVVLAPVNPKDEHQHWFKDMRFSTKVKDGEGMPAFALVNKATGLAVKHSLGQSHPVKLVPFNPEYEDASVLWTESKDVGKGFRCIRMVNNTRLNLDAFHGDKDHGGVRDGTTVVLWEWCKGDNQSWKILPWGPEAHSSSPGAATACTIGGVPVHTVRVFSAAGEDYCLTVRNGTACLAPKNPRDDYQHWIKDMRHSNKIRDEEGYPAFALVNKVTGEAIKHSTGQGHPVKLVPYNPEYQDESVLWTESKDVGKGFRCIRMVNNIYLNFDAFHGDKDHGGIHDGTEIVLWKWCEGDNQRWKILPW |
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| Function | Ricin B-like lectin R40G2 [UniProtKB/Swiss-Prot:Q6Z4N6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0027670 | OsLima_07g0027670.03 | Chr07 | 30018309 | 30020055 | + | NAM | ||
| CDS seq | atgcagcactggttcaaggacatgaggttcagcaccaaggtgaaggacggggagggcatgccggcgttcgccctcgtcaacaaggccaccggactcgccgtcaagcactccctcggccagtcccaccccgtgaagcttgtgccgttcaacccggagtacgaggacgcgtcggtgctgtggacggagagcaaggacgtcggcaagggcttccgctgcatccgcatggtcaacaacacccgcctcaacttggacgccttccacggcgacaaggaccacggcggcgtccgcgacggcaccaccgtcgtcctctgggagtggtgcaagggcgacaaccagagctggaagatcctcccctggggccccgaggctcactcctcctcccccggcgccgccaccgcctgcaccatcggcggcgtccccgtccacaccgtccgcgtcttctccgccgcaggcgaggactactgcctcaccgtccgcaacggcaccgcctgcctcgcccccaagaaccccagggacgactaccagcactggatcaaggacatgaggcacagcaacaagatcagggacgaggaaggctacccggcgttcgcgctggtcaacaaggtcaccggcgaagccatcaagcactccaccggacagggccacccggtgaagctggttccctacaacccagagtaccaggacgagtctgtgctgtggacggagagcaaggatgtgggcaagggcttccgctgcatccgcatggtgaacaacatctacctcaacttcgacgccttccatggcgacaaggatcacggcggcatccacgatggcaccgagatcgtgctgtggaagtggtgcgagggtgacaaccagcgctggaagatcctcccctggtag
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| Protein seq | MQHWFKDMRFSTKVKDGEGMPAFALVNKATGLAVKHSLGQSHPVKLVPFNPEYEDASVLWTESKDVGKGFRCIRMVNNTRLNLDAFHGDKDHGGVRDGTTVVLWEWCKGDNQSWKILPWGPEAHSSSPGAATACTIGGVPVHTVRVFSAAGEDYCLTVRNGTACLAPKNPRDDYQHWIKDMRHSNKIRDEEGYPAFALVNKVTGEAIKHSTGQGHPVKLVPYNPEYQDESVLWTESKDVGKGFRCIRMVNNIYLNFDAFHGDKDHGGIHDGTEIVLWKWCEGDNQRWKILPW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0027670 | OsLima_07g0027670.01 | Chr07 | 30018020 | 30020055 | + | NAM | ||
| CDS seq | atgtttgggttcgggcaccaccacaaccaggcaccggcggcgccgtcggacccgaaccagatcttcaagatcttctgccgcgccaacgagaactactgcctcaccgtccgcgacggcgccgtcgtcctcgcccccgtcaaccccaaggacgagcaccagcactggttcaaggacatgaggttcagcaccaaggtgaaggacggggagggcatgccggcgttcgccctcgtcaacaaggccaccggactcgccgtcaagcactccctcggccagtcccacccccttgtgccgttcaacccggagtacgaggacgcgtcggtgctgtggacggagagcaaggacgtcggcaagggcttccgctgcatccgcatggtcaacaacacccgcctcaacttggacgccttccacggcgacaaggaccacggcggcgtccgcgacggcaccaccgtcgtcctctgggagtggtgcaagggcgacaaccagagctggaagatcctcccctggggccccgaggctcactcctcctcccccggcgccgccaccgcctgcaccatcggcggcgtccccgtccacaccgtccgcgtcttctccgccgcaggcgaggactactgcctcaccgtccgcaacggcaccgcctgcctcgcccccaagaaccccagggacgactaccagcactggatcaaggacatgaggcacagcaacaagatcagggacgaggaaggctacccggcgttcgcgctggtcaacaaggtcaccggcgaagccatcaagcactccaccggacagggccacccggtgaagctggttccctacaacccagagtaccaggacgagtctgtgctgtggacggagagcaaggatgtgggcaagggcttccgctgcatccgcatggtgaacaacatctacctcaacttcgacgccttccatggcgacaaggatcacggcggcatccacgatggcaccgagatcgtgctgtggaagtggtgcgagggtgacaaccagcgctggaagatcctcccctggtag
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| Protein seq | MFGFGHHHNQAPAAPSDPNQIFKIFCRANENYCLTVRDGAVVLAPVNPKDEHQHWFKDMRFSTKVKDGEGMPAFALVNKATGLAVKHSLGQSHPLVPFNPEYEDASVLWTESKDVGKGFRCIRMVNNTRLNLDAFHGDKDHGGVRDGTTVVLWEWCKGDNQSWKILPWGPEAHSSSPGAATACTIGGVPVHTVRVFSAAGEDYCLTVRNGTACLAPKNPRDDYQHWIKDMRHSNKIRDEEGYPAFALVNKVTGEAIKHSTGQGHPVKLVPYNPEYQDESVLWTESKDVGKGFRCIRMVNNIYLNFDAFHGDKDHGGIHDGTEIVLWKWCEGDNQRWKILPW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0027670 | OsLima_07g0027670.02 | Chr07 | 30018021 | 30020055 | + | NAM | ||
| CDS seq | atgtttgggttcgggcaccaccacaaccaggcaccggcggcgccgtcggacccgaaccagatcttcaagatcttctgccgcgccaacgagaactactgcctcaccgtccgcgacggcgccgtcgtcctcgcccccgtcaaccccaaggacgagcaccagcactggttcaaggacatgaggttcagcaccaaggtgaaggacggggagggcatgccggcgttcgccctcgtcaacaaggccaccggactcgccgtcaagcactccctcggccagtcccaccccgtgaagcttgtgccgttcaacccggagtacgaggacgcgtcggtgctgtggacggagagcaaggacgtcggcaagggcttccgctgcatccgcatggtcaacaacacccgcctcaacttggacgccttccacggcgacaaggaccacggcggcgtccgcgacggcaccaccgtcgtcctctgggagtggtgcaagggcgacaaccagagctggaagatcctcccctggggccccgaggctcactcctcctcccccggcgccgccaccgcctgcaccatcggcggcgtccccgtccacaccgtccgcgtcttctccgccgcaggcgaggactactgcctcaccgtccgcaacggcaccgcctgcctcgcccccaagaaccccagggacgactaccagcactggatcaaggacatgaggcacagcaacaagatcagggacgaggaaggctacccggcgttcgcgctggtcaacaaggtcaccggcgaagccatcaagcactccaccggacagggccacccggtgaagctggttccctacaacccagagtaccaggacgagtctgtgctgtggacggagagcaaggatgtgggcaagggcttccgctgcatccgcatggtgaacaacatctacctcaacttcgacgccttccatggcgacaaggatcacggcggcatccacgatggcaccgagatcgtgctgtggaagtggtgcgagggtgacaaccagcgctggaagatcctcccctggtag
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| Protein seq | MFGFGHHHNQAPAAPSDPNQIFKIFCRANENYCLTVRDGAVVLAPVNPKDEHQHWFKDMRFSTKVKDGEGMPAFALVNKATGLAVKHSLGQSHPVKLVPFNPEYEDASVLWTESKDVGKGFRCIRMVNNTRLNLDAFHGDKDHGGVRDGTTVVLWEWCKGDNQSWKILPWGPEAHSSSPGAATACTIGGVPVHTVRVFSAAGEDYCLTVRNGTACLAPKNPRDDYQHWIKDMRHSNKIRDEEGYPAFALVNKVTGEAIKHSTGQGHPVKLVPYNPEYQDESVLWTESKDVGKGFRCIRMVNNIYLNFDAFHGDKDHGGIHDGTEIVLWKWCEGDNQRWKILPW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0027670 | OsLima_07g0027670.04 | Chr07 | 30018020 | 30019953 | + | IsoSeq | ||
| CDS seq | atcatcgctcgcagtcgcagcacaaaaacatttctctcgcgagtcgcgagttgcaccgatcgaattaagggtcgaagatgtttgggttcgggcaccaccacaaccaggcaccggcggcgccgtcggacccgaaccagatcttcaagatcttctgccgcgccaacgagaactactgcctcaccgtccgcgacggcgccgtcgtcctcgcccccgtcaaccccaaggacgagcaccagcactggttcaagg
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| Protein seq | IIARSRSTKTFLSRVASCTDRIKGRRCLGSGTTTTRHRRRRRTRTRSSRSSAAPTRTTASPSATAPSSSPPSTPRTSTSTGSR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 30018472 | 30018586 | + | OsLima_07g0027670.04,OsLima_07g0027670.02,OsLima_07g0027670.03 | OsLima_07g0027670.03,OsLima_07g0027670.04,OsLima_07g0027670.01,OsLima_07g0027670.02 | All |
| RI | Chr07 | 30018580 | 30019176 | + | OsLima_07g0027670.04 | OsLima_07g0027670.03,OsLima_07g0027670.04,OsLima_07g0027670.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.651822 | 1.008145 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0683900 | RBH | 54.928452 | 59.122253 | 58.250732 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g48460 | RBH | 0.404712 | 1.553467 | 2.066215 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0683900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0028010 | RBH | 0.0 | 0.0 | 0.788490 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0028050 | RBH | 0.777440 | 0.0 | 1.757496 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027850 | RBH | 6.684782 | 97.621376 | 46.148956 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027640 | RBH | 0.088809 | 0.036607 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027950 | RBH | 70.388756 | 222.274170 | 65.582771 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0472000 | RBH | 40.423626 | 52.1333755 | 18.852046 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028380 | SBH | 5.696094 | 10.014267 | 8.830544 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0486000 | RBH | 26.4688465 | 19.277301 | 42.1646785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016080 | SBH | 0.471720 | 3.081861 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0028120 | RBH | 13.070607 | 122.927681 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027840 | RBH | 133.570053 | 208.551559 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0028170 | RBH | 2.222518 | 19.079718 | 13.929794 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027730 | RBH | 0.252217 | 74.305077 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027810 | RBH | 9.257521 | 0.0 | 18.669134 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027550 | RBH | 13.135578 | 73.961311 | 59.728306 |
