Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_07g0017820 | OGI:07058900 | 5/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr07:20633313-20636839 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaggttgccctgaccacctcacccatgacaacctctgcgtccaccggccccaagtaggctgccatcgcttcatctctttcttgcatgtgttcgttgttgaggttgaagagggtgttgagtgcgtcgatcgcatcctgcggtaggggcgtgttgaacatcgccttgtagtcagcaagtgtttggttagtgaggactcctcctactggaaggaaacccatttggcgacagacattgatttgtgcctttacgaccatcgggatgccggcgagaggtttcatggcgagtctggcgctccgcctggcaccatcctcggcctgcacttcattctgttgcacctgttgttcttcgagtggaatggtgagaagcgctggttccaatggcttgaacagcacgctcatggcgccgtcgacagcagctctgatggtcggcgtggacggcacaactggagatgttggggtggtaggagcctgctccccgtcttgcagtagcatcgcggcaGggggaatcaccacagccatgtcatctagcgcagcgtggtccatgtcgcccggcagcaaaacagcagagcgggtcaccacggccactctatcgtgcggcatagttgtcatgtcgccacttgccgcttcgtcctctgcgtcctccaccggcgcctctcccttgtccgcgacggcctcatcatcctgaaccgtagcggtcgccatagctgccgctgcagccacctcaacctgcgccttggacgtggtgtcgtcgtgcaccatagcaacatcgtgcgcaacagcaaccgccgttgccgctgcagccgcctcatcctgctccttgtctgcggtgtcgtcgtccgccacagcgacgtcgtgcgccgcggcagcctccatcgctacgtcgtgcgccgcggcagcatccaccgcgacgtcgtgcgcggcagcagtgccgcgttccacatcatgcactgcagtgccgcatgccgccgtgccgcgttccacatcatccgccagtgctgcagcggctgccacaacagccgcttcatcacgcgccgcagcggcatcatgtgccacagcaacagtatcgtgcaccgcatcagcaccatgcaccgcagccgcaaccatgtctccatgttccttatcgccctgtgccgctgcatttacaagagccaaatatgccgaagccggatcggagaattcacctttgtctaccgtgagcggcaagttgtcgccaacgacggttggagaagcacctcgtgatgccagcggtgatggaacgacgagggccgcttccccattttcttcccatcgacggagggcgtcgtcgacctcacggatggacggcggccgctgggcagcttgcttgatgtgccaaaaagctcggctcgcaggaatggtgtgctccgtcttggtagagtgccctttggaccagccttcatcccccctgcccccagtttgagcttgccgaagagtgaggcaaagtcaaaggatatgtcattgatgtcgcggacatttttctctgtgagtgccttcaccttccattgcaacgaggttaacttgaagtggtaaagaaccttcagcttacttacctcgcggtcagcacgtttagcctcggacaccggcgccagaggttcagctgcttccaccggatcgcgtgccccttcatggtgtcgtctgccatagcagttcccgcctacggagtcccttctccttggcgagcacgtgcggtgtcgcacgccgttcagccccgcgcgccttgaactgttgccaccacgcgtgtcgccgccgtcgcggccgtcacggtcgtcatcgcgatcatggcgtctccagccctggcctcgcagctcgtccgggtggtcgtcattgtaccgcctcccttcatttcggcgactatttccgcgctcgcggtcacggtcgacaccacgcgtgcgatcgcagccgcattcatcattgcggcgttcgtcttcctccctgtcttgagtgcgcggcggcagagggtgcggtccatcgaaggcgcgtgggggcggctgctcgccatcaaccacgccaaggtgccaagccgacagctggcgcttggtcggctcacacgccgcgtcagggttggagaggtcaatcgttgccgtggtgtagtcatggatctcctcgacgtggatgagcaccgggtacttggccccgtactgccagtggtccggtggcgactccgtgaccaccaccgagtcggcgtcagcgtcctgcgtgcgcctggtgaaggtgagccaaacacgtcaagggatgaggctcgggttggaggtccaagcccacaagctaatgtagcgcgtgtggcttgggtgaaccaagttagtctcgattttctccacaccgcaacgccgcgcgacgatcttgtcgacgatttccggctgccaggcatgtcgggggacgccgtccaggaagagcttgacacgaaacatgagagccgcgcccatcgcgtcctttagacatctccacttgatgaagtggacttcaatccctcgccgtttgacgaagcccttccaaagagcatcggcacagtggctgcgccgggagaacttgatgaggtaggcttcggggtggtggtgggtgacctcaacgtcgccagagtgaagacgaaactcctccttgatggcgttctccacgtctttggctgtcatggccgctggtgctcgcattgcccaggtgactgccgccgtggtctcccattcacgacgttcttcctggagaacaaacgaagacaggatgatgcagtcgtcgtcgagggggcgcgttcttgggtcacccaggagagccattgctgctttggtggtggggcgcggaggcggaggaaggttgcatggtggtgttggtggcctagagtggtgtcgaggggggcgtaaaggcaagctggaactggggcacgacggccgttgcgacgggtgcgacggcggatatggaagaggcgagcgtcgcgtgacggcgcaacgcagcgtgggcacccgcgcgctgcaattgcgggccttatgcccggagcgtgcgcagttgaagcatcgcacagggtctctgcattgagctgcgcggtgattgcgagcaaggcaaatgaaacaacggccctgagtttttgcttgaaaagcttagagcgagggggatggtgccggccggttgttggagtcaagtgaatggccgtcgcgtcgctttgaattgctctttgactcgggagcaagagcttccttttgcctccaccagaagcgccttctgaccggcgtccaacctccgtctcgagtgttaatggtgccgctggtcgactggacaggggagagtctcctcgccgtactccctcgctttgtagcttcgtaggatgcttgctgtcgatcttggcctggagactggttggcgaggtagtagttgctcttgacgggcactgttaaatgcgatttcaaacggggttttaaggcgggctgcttcaccacatcggcaaacagttggaggcggcgcggatctggtgtcccagcccccggatccggggtctcagggacctccgaaactgcatctggcgacat
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| CDS seq | atgtcgccagatgcagtttcggaggtccctgagaccccggatccgggggctgggacaccagatccgcgccgcctccaactgtttgccgatgtggtgaagcagcccgccttaaaaccccgtttgaaatcgcatttaacagtgcccgtcaagagcaactactacctcgccaaccagtctccaggccaagatcgacagcaagcatcctacgaagctacaaagcgagggagtacggcgaggagactctcccctgtccagtcgaccagcggcaccattaacactcgagacggagctcaaactgggggcaggggggatgaaggctggtccaaagggcactctaccaagacggagcacaccattcctgcgagccgagctttttggcacatcaagcaagctgcccagcggccgccgtccatccgtgaggtcgacgacgccctccgtcgatgggaagaaaatggggaagcggccctcgtcgttccatcaccgctggcatcacgaggtgcttctccaaccgtcgttggcgacaacttgccgctcacggtagacaaaggtgaattctccgatccggcttcggcatatttggctcttgtaaatgcagcggcacagggcgataaggaacatggagacatggttgcggctgcggtgcatggtgctgatgcggtgcacgatactgttgctgtggcacatgatgccgctgcggcgcgtgatgaagcggctgttgtggcagccgctgcagcactggcggatgatgtggaacgcggcacggcggcatgcggcactgcagtgcatgatgtggaacgcggcactgctgccgcgcacgacgtcgcggtggatgctgccgcggcgcacgacgtagcgatggaggctgccgcggcgcacgacgtcgctgtggcggacgacgacaccgcagacaaggagcaggatgaggcggctgcagcggcaacggcggttgctgttgcgcacgatgttgctatggtgcacgacgacaccacgtccaaggcgcaggttgaggtggctgcagcggcagctatggcgaccgctacggttcaggatgatgaggccgtcgcggacaagggagaggcgccggtggaggacgcagaggacgaagcggcaagtggcgacatgacaactatgccgcacgatagagtggccgtggtgacccgctctgctgttttgctgccgggcgacatggaccacgctgcgctagatgacatggctgtggtgattccccCtgccgcgatgctactgcaagacggggagcaggctcctaccaccccaacatctccagttgtgccgtccacgccgaccatcagagctgctgtcgacggcgccatgagcgtgctgttcaagccattggaaccagcgcttctcaccattccactcgaagaacaacaggtgcaacagaatgaagtgcaggccgaggatggtgccaggcggagcgccagactcgccatgaaacctctcgccggcatcccgatggtcgtaaaggcacaaatcaatgtctgtcgccaaatgggtttccttccagtaggaggagtcctcactaaccaaacacttgctgactacaaggcgatgttcaacacgcccctaccgcaggatgcgatcgacgcactcaacaccctcttcaacctcaacaacgaacacatgcaagaaagagatgaagcgatggcagcctacttggggccggtggacgcagaggttgtcatgggtgaggtggtcagggcaacctag
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| Protein seq | MSPDAVSEVPETPDPGAGTPDPRRLQLFADVVKQPALKPRLKSHLTVPVKSNYYLANQSPGQDRQQASYEATKRGSTARRLSPVQSTSGTINTRDGAQTGGRGDEGWSKGHSTKTEHTIPASRAFWHIKQAAQRPPSIREVDDALRRWEENGEAALVVPSPLASRGASPTVVGDNLPLTVDKGEFSDPASAYLALVNAAAQGDKEHGDMVAAAVHGADAVHDTVAVAHDAAAARDEAAVVAAAAALADDVERGTAACGTAVHDVERGTAAAHDVAVDAAAAHDVAMEAAAAHDVAVADDDTADKEQDEAAAAATAVAVAHDVAMVHDDTTSKAQVEVAAAAAMATATVQDDEAVADKGEAPVEDAEDEAASGDMTTMPHDRVAVVTRSAVLLPGDMDHAALDDMAVVIPPAAMLLQDGEQAPTTPTSPVVPSTPTIRAAVDGAMSVLFKPLEPALLTIPLEEQQVQQNEVQAEDGARRSARLAMKPLAGIPMVVKAQINVCRQMGFLPVGGVLTNQTLADYKAMFNTPLPQDAIDALNTLFNLNNEHMQERDEAMAAYLGPVDAEVVMGEVVRAT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0017820 | OsNaBo_07g0017820.01 | Chr07 | 20633313 | 20636839 | - | NAM | ||
| CDS seq | atgtcgccagatgcagtttcggaggtccctgagaccccggatccgggggctgggacaccagatccgcgccgcctccaactgtttgccgatgtggtgaagcagcccgccttaaaaccccgtttgaaatcgcatttaacagtgcccgtcaagagcaactactacctcgccaaccagtctccaggccaagatcgacagcaagcatcctacgaagctacaaagcgagggagtacggcgaggagactctcccctgtccagtcgaccagcggcaccattaacactcgagacggagctcaaactgggggcaggggggatgaaggctggtccaaagggcactctaccaagacggagcacaccattcctgcgagccgagctttttggcacatcaagcaagctgcccagcggccgccgtccatccgtgaggtcgacgacgccctccgtcgatgggaagaaaatggggaagcggccctcgtcgttccatcaccgctggcatcacgaggtgcttctccaaccgtcgttggcgacaacttgccgctcacggtagacaaaggtgaattctccgatccggcttcggcatatttggctcttgtaaatgcagcggcacagggcgataaggaacatggagacatggttgcggctgcggtgcatggtgctgatgcggtgcacgatactgttgctgtggcacatgatgccgctgcggcgcgtgatgaagcggctgttgtggcagccgctgcagcactggcggatgatgtggaacgcggcacggcggcatgcggcactgcagtgcatgatgtggaacgcggcactgctgccgcgcacgacgtcgcggtggatgctgccgcggcgcacgacgtagcgatggaggctgccgcggcgcacgacgtcgctgtggcggacgacgacaccgcagacaaggagcaggatgaggcggctgcagcggcaacggcggttgctgttgcgcacgatgttgctatggtgcacgacgacaccacgtccaaggcgcaggttgaggtggctgcagcggcagctatggcgaccgctacggttcaggatgatgaggccgtcgcggacaagggagaggcgccggtggaggacgcagaggacgaagcggcaagtggcgacatgacaactatgccgcacgatagagtggccgtggtgacccgctctgctgttttgctgccgggcgacatggaccacgctgcgctagatgacatggctgtggtgattccccCtgccgcgatgctactgcaagacggggagcaggctcctaccaccccaacatctccagttgtgccgtccacgccgaccatcagagctgctgtcgacggcgccatgagcgtgctgttcaagccattggaaccagcgcttctcaccattccactcgaagaacaacaggtgcaacagaatgaagtgcaggccgaggatggtgccaggcggagcgccagactcgccatgaaacctctcgccggcatcccgatggtcgtaaaggcacaaatcaatgtctgtcgccaaatgggtttccttccagtaggaggagtcctcactaaccaaacacttgctgactacaaggcgatgttcaacacgcccctaccgcaggatgcgatcgacgcactcaacaccctcttcaacctcaacaacgaacacatgcaagaaagagatgaagcgatggcagcctacttggggccggtggacgcagaggttgtcatgggtgaggtggtcagggcaacctag
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| Protein seq | MSPDAVSEVPETPDPGAGTPDPRRLQLFADVVKQPALKPRLKSHLTVPVKSNYYLANQSPGQDRQQASYEATKRGSTARRLSPVQSTSGTINTRDGAQTGGRGDEGWSKGHSTKTEHTIPASRAFWHIKQAAQRPPSIREVDDALRRWEENGEAALVVPSPLASRGASPTVVGDNLPLTVDKGEFSDPASAYLALVNAAAQGDKEHGDMVAAAVHGADAVHDTVAVAHDAAAARDEAAVVAAAAALADDVERGTAACGTAVHDVERGTAAAHDVAVDAAAAHDVAMEAAAAHDVAVADDDTADKEQDEAAAAATAVAVAHDVAMVHDDTTSKAQVEVAAAAAMATATVQDDEAVADKGEAPVEDAEDEAASGDMTTMPHDRVAVVTRSAVLLPGDMDHAALDDMAVVIPPAAMLLQDGEQAPTTPTSPVVPSTPTIRAAVDGAMSVLFKPLEPALLTIPLEEQQVQQNEVQAEDGARRSARLAMKPLAGIPMVVKAQINVCRQMGFLPVGGVLTNQTLADYKAMFNTPLPQDAIDALNTLFNLNNEHMQERDEAMAAYLGPVDAEVVMGEVVRAT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0539200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0539200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0028020 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018030 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018010 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017900 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0016560 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0016430 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0016450 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0016690 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0016480 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027800 | SBH | 0.647617 | 0.560445 | 4.268677 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
