Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0017900 | OGI:07058900 | 5/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:20922083-20923727 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaggttgccctgaccacctcacccatgacagcctctgcgtccaccggccccaagtaggctgccatcgcttcatctctttcttgcatgtgttcgttgttgaggttgaagagggtgttgagtgcgtcgatcgcatcctgcggtaggggcgtgttgaacatcgccttgtagtcagcaagtgtttggttagtgaggactcctcctactggaaggaaacccatttggcgacagacattgatttgtgcctttacgaccatcgggatgccggcgagaggtttcatggcgagtctggcgctccgcctggcaccatcctcggcctgcacttcattctgttgcacctgttgttcttcgagtggaatggtgagaagcgctggttccaatggcttgaacagcacgctcatggcgccgtcgacagcagctctgatggtcggcgtggacggcacaactggagatgttggggtggtaggagcctgctccccgtcttgcagtagcatcgcggcagggggaatcaccacagccatgtcatctagcgcagcgtggtccatgtcgcccggcagcaaaacagcagagcgggtcaccacggccactctatcgtgcggcatagttgtcatgtcgccacttgccgcttcgtcctctgcgtcctccaccggcgcctctcccttgtccgcgacggcctcatcatcctgaaccgtagcggtcgccatagctgccgctgcagccacctcaacctgcgccttggacgtggtgtcgtcgtgcaccatagcaacgtcgtgcgcaacagcaaccgccgttgccgctgcagccgcctcatcctgctccttgtctgcggtgtcgtcgtccgccacagcgacgtcgtgcgccgcggcagcctccatcgctacgtcgtgcgccgcggcagcatccaccgcgacgtcgtgcgcggcagcagtgccgcgttccacatcatgcactgcagtgccgcatgccgccgtgccgcgttccacatcatccgccagtgctgcagcggctgccacaacagccgcttcatcacgcgccgcagcggcatcatgtgccacagcaacagtatcgtgcaccgcatcagcaccatgcaccgcagccgcaaccatgtctccatgttccttatcgccctgtgccgctgcatttacaagagccaaatatgccgaagccggatcggagaattcacctttgtctaccgtgagcggcaagttgtcgccaacgacggttggagaagcacctcgtgatgccagcggtgatggaacgacgagggccgcttccccattttcttcccatcgacggagggcgtcgtcgacctcacggatggacggcggccgctgggcagcttgcttgatgcgccaaaaagctcggctcgcaggaatggtgtgctccgtcttggtagagtgccctttggaccagccttcatcccccctgcccccagtttgagcttgccgaagagtgaggcaaagtcaaaggatatgtcattgatgtcgcggacatttttctctgtgagtgccttcaccttccattgcaacgaggttaacttgaagtggtaaagaaccttcagcttacttacctcgcggtcagcacgtttagcctcggacaccggcgccagaggttcagctgcttccaccggatcgcgtgccccttcat
More
|
||||||||||
| CDS seq | atgaaggggcacgcgatccggtggaagcagctgaacctctggcgccggtgtccgaggctaaacgtgctgaccgcgaggggggatgaaggctggtccaaagggcactctaccaagacggagcacaccattcctgcgagccgagctttttggcgcatcaagcaagctgcccagcggccgccgtccatccgtgaggtcgacgacgccctccgtcgatgggaagaaaatggggaagcggccctcgtcgttccatcaccgctggcatcacgaggtgcttctccaaccgtcgttggcgacaacttgccgctcacggtagacaaaggtgaattctccgatccggcttcggcatatttggctcttgtaaatgcagcggcacagggcgataaggaacatggagacatggttgcggctgcggtgcatggtgctgatgcggtgcacgatactgttgctgtggcacatgatgccgctgcggcgcgtgatgaagcggctgttgtggcagccgctgcagcactggcggatgatgtggaacgcggcacggcggcatgcggcactgcagtgcatgatgtggaacgcggcactgctgccgcgcacgacgtcgcggtggatgctgccgcggcgcacgacgtagcgatggaggctgccgcggcgcacgacgtcgctgtggcggacgacgacaccgcagacaaggagcaggatgaggcggctgcagcggcaacggcggttgctgttgcgcacgacgttgctatggtgcacgacgacaccacgtccaaggcgcaggttgaggtggctgcagcggcagctatggcgaccgctacggttcaggatgatgaggccgtcgcggacaagggagaggcgccggtggaggacgcagaggacgaagcggcaagtggcgacatgacaactatgccgcacgatagagtggccgtggtgacccgctctgctgttttgctgccgggcgacatggaccacgctgcgctagatgacatggctgtggtgattccccctgccgcgatgctactgcaagacggggagcaggctcctaccaccccaacatctccagttgtgccgtccacgccgaccatcagagctgctgtcgacggcgccatgagcgtgctgttcaagccattggaaccagcgcttctcaccattccactcgaagaacaacaggtgcaacagaatgaagtgcaggccgaggatggtgccaggcggagcgccagactcgccatgaaacctctcgccggcatcccgatggtcgtaaaggcacaaatcaatgtctgtcgccaaatgggtttccttccagtaggaggagtcctcactaaccaaacacttgctgactacaaggcgatgttcaacacgcccctaccgcaggatgcgatcgacgcactcaacaccctcttcaacctcaacaacgaacacatgcaagaaagagatgaagcgatggcagcctacttggggccggtggacgcagaggctgtcatgggtgaggtggtcagggcaacctag
More
|
||||||||||
| Protein seq | MKGHAIRWKQLNLWRRCPRLNVLTARGDEGWSKGHSTKTEHTIPASRAFWRIKQAAQRPPSIREVDDALRRWEENGEAALVVPSPLASRGASPTVVGDNLPLTVDKGEFSDPASAYLALVNAAAQGDKEHGDMVAAAVHGADAVHDTVAVAHDAAAARDEAAVVAAAAALADDVERGTAACGTAVHDVERGTAAAHDVAVDAAAAHDVAMEAAAAHDVAVADDDTADKEQDEAAAAATAVAVAHDVAMVHDDTTSKAQVEVAAAAAMATATVQDDEAVADKGEAPVEDAEDEAASGDMTTMPHDRVAVVTRSAVLLPGDMDHAALDDMAVVIPPAAMLLQDGEQAPTTPTSPVVPSTPTIRAAVDGAMSVLFKPLEPALLTIPLEEQQVQQNEVQAEDGARRSARLAMKPLAGIPMVVKAQINVCRQMGFLPVGGVLTNQTLADYKAMFNTPLPQDAIDALNTLFNLNNEHMQERDEAMAAYLGPVDAEAVMGEVVRAT |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0017900 | OsARC_07g0017900.01 | Chr07 | 20922083 | 20923727 | - | NAM | ||
| CDS seq | atgaaggggcacgcgatccggtggaagcagctgaacctctggcgccggtgtccgaggctaaacgtgctgaccgcgaggggggatgaaggctggtccaaagggcactctaccaagacggagcacaccattcctgcgagccgagctttttggcgcatcaagcaagctgcccagcggccgccgtccatccgtgaggtcgacgacgccctccgtcgatgggaagaaaatggggaagcggccctcgtcgttccatcaccgctggcatcacgaggtgcttctccaaccgtcgttggcgacaacttgccgctcacggtagacaaaggtgaattctccgatccggcttcggcatatttggctcttgtaaatgcagcggcacagggcgataaggaacatggagacatggttgcggctgcggtgcatggtgctgatgcggtgcacgatactgttgctgtggcacatgatgccgctgcggcgcgtgatgaagcggctgttgtggcagccgctgcagcactggcggatgatgtggaacgcggcacggcggcatgcggcactgcagtgcatgatgtggaacgcggcactgctgccgcgcacgacgtcgcggtggatgctgccgcggcgcacgacgtagcgatggaggctgccgcggcgcacgacgtcgctgtggcggacgacgacaccgcagacaaggagcaggatgaggcggctgcagcggcaacggcggttgctgttgcgcacgacgttgctatggtgcacgacgacaccacgtccaaggcgcaggttgaggtggctgcagcggcagctatggcgaccgctacggttcaggatgatgaggccgtcgcggacaagggagaggcgccggtggaggacgcagaggacgaagcggcaagtggcgacatgacaactatgccgcacgatagagtggccgtggtgacccgctctgctgttttgctgccgggcgacatggaccacgctgcgctagatgacatggctgtggtgattccccctgccgcgatgctactgcaagacggggagcaggctcctaccaccccaacatctccagttgtgccgtccacgccgaccatcagagctgctgtcgacggcgccatgagcgtgctgttcaagccattggaaccagcgcttctcaccattccactcgaagaacaacaggtgcaacagaatgaagtgcaggccgaggatggtgccaggcggagcgccagactcgccatgaaacctctcgccggcatcccgatggtcgtaaaggcacaaatcaatgtctgtcgccaaatgggtttccttccagtaggaggagtcctcactaaccaaacacttgctgactacaaggcgatgttcaacacgcccctaccgcaggatgcgatcgacgcactcaacaccctcttcaacctcaacaacgaacacatgcaagaaagagatgaagcgatggcagcctacttggggccggtggacgcagaggctgtcatgggtgaggtggtcagggcaacctag
More
|
|||||||
| Protein seq | MKGHAIRWKQLNLWRRCPRLNVLTARGDEGWSKGHSTKTEHTIPASRAFWRIKQAAQRPPSIREVDDALRRWEENGEAALVVPSPLASRGASPTVVGDNLPLTVDKGEFSDPASAYLALVNAAAQGDKEHGDMVAAAVHGADAVHDTVAVAHDAAAARDEAAVVAAAAALADDVERGTAACGTAVHDVERGTAAAHDVAVDAAAAHDVAMEAAAAHDVAVADDDTADKEQDEAAAAATAVAVAHDVAMVHDDTTSKAQVEVAAAAAMATATVQDDEAVADKGEAPVEDAEDEAASGDMTTMPHDRVAVVTRSAVLLPGDMDHAALDDMAVVIPPAAMLLQDGEQAPTTPTSPVVPSTPTIRAAVDGAMSVLFKPLEPALLTIPLEEQQVQQNEVQAEDGARRSARLAMKPLAGIPMVVKAQINVCRQMGFLPVGGVLTNQTLADYKAMFNTPLPQDAIDALNTLFNLNNEHMQERDEAMAAYLGPVDAEAVMGEVVRAT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0539200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0539200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001060 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018030 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018010 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0016560 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0471400 | SBH | 4.509084 | 7.216408 | 0.352129 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0016430 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0016450 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0016690 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0016480 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027800 | SBH | 0.647617 | 0.560445 | 4.268677 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017820 | RBH | 0.0 | 0.0 | 0.0 |
