Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_07g0013000 | OGI:07044190 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr07:15098058-15102377 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggcgccgccggaggcgacgggggcgccgccccagactgaaggacggcgtcgaggtctgcgtatttgacgagtcaccagaggtcttctccagagcggtgcacgccatctcggagctcacagccggggagcccgagccgaacttccctaacaccgaagtcgagcggctcgcctcttcattaactttcctcaggtgagaaactccctccttgctctgtctaatccggtacctaatcactgcggcaaaattggtaactttctattgatggcctatttagctgggtggagtggacgaatttgtgtttaatagtatcgtttatcagcaaagcattaatttgttagtcattgatgcaatttcacggagcttttaatgggaaaacttatgtggcatataaactctcTttaatttattcattgccttatgtggcacacgcggtggtaaattttattggaatttgttaatttagatcccaagacatcgctgccacacaaataggaaataagcagttgtcacaggaatgctttggtgccgtttcattattcgtgttgtggctattagaattcatttggcttttgccactgcaattgaccatattcttacttccagtgtccttaggtaataatatcggctcaatgcacaattctgtttttctattaattagagcgatacatggttttttttttcatgtcgtaaacaaaatgcacttgcattgttagttgttttactactaattcactaagtttaagtcacttttgttctggtagatatatttccttaatctgtactcatctgttttttgatgactctcatcgatgatcatttttgcacatcgatcatttttgcacattgtgactttctagcttaccatttgatgttatggtttacggtacagaggagtagcgaaacttgatcccctttatatagaagccactaagtcagtgagccccacctttatttgtgaagactacttgttagctgttactactctgtattcaggattgacagattcagtaacaactttagttattagcaacctatagtagcatgctataactagtattattaaccttgctggcttttatagagcaaggatgattcagaagtcagaagctaaaaaaaataccctcatttatgcaatcatgcattcaacataaatgaatcagtaaaggctatgtgcgcaaaacctctagaagattctttcaagtacgcctttataacagctgaagcatacagtgaatttcagttgttacaaatggaaatctagttagttctacatatgccaatggggaattggggattctaggagctacatttggggagcataaagatacacagctcaaaagttctgtaaggctaattttgttggttctcctcaagaccatttaaattgttatggaaaacaaactaaccaagtgtgtcatgaaaatcaaagttttcatatggctactcttttatgatagattgaacaccaaagatatgcttgacaaaaagaattgtgcttcaaaagatgctaacatctcttatgttctgcgctcaactagtataagggagattttgatacatcttttttcatgtgcccttttagttgaagggacaagaactggattcagatggaatattaatttaaatttgtttcaaatgattgttctaccaagaatcggcttgaaaagaaaaggtttcctaaagattatgtgcattgcatgttggcacatttggaagcggaggaatgaatttaccataatatcaaCccatcggtggatcaatggtttcaaaacttcaaagcatatgtgtaggatgaatgagcctttaagatctatagtctttgattagttacataacttgttaaaattccgttttgtaattgtaactagactctatatctatttcttatactagcaaaagggcacgtgcattgcaacaggaaactataattataataaacgttagataattcatgttaatctttgtgattcgagccctttaagagaaatattgttattatggatcttaacttgtaaaatagtaacgagaaattgtaacataagctttagatcatttaggaaaaaaactcacgtactattgaaatgaataacatggcataacttctattgtccctatgtttttactcgctccatgttgttattgtgcctttgattcgtgtaatgtgaccttgccttgtcatgtgatcaagaggttaagaaagtgagagtggttggctgacggccaagtgtggtgatggcagcaaggatagagggggcgaggcagtggcacgcctaactctaaccaacgagagcaagagaagagtagagccaaaaattagacactaacatggttagcaaactggatcatgtgtgttgtgtgttgtaatttggttttggaaacaaaaagattgtaattagaccataatatagacatcgtgaaggaacgcaatcttgatggaacactcaaacccaatcaacttaaatatataatAaaaattattgtagcctacctatctcaaatgttgacaagtataaggctgtagccaatcaatgtatgcaccaaagttgaaaggaaagagccattgccaaactatataaattactatgaaatttacactcactatattacagtctccagctaatcagaatcaatcaattgggaatactgtcaggccaacgccaagcagttataatttatataggagagtgcaatccattcttttttacattgtatgtaatcaaattacattcaaattttaattttactgtgcataaaattcacatgttaatgctgtatttctggttaatgctctagattccttagtatgtagagcccccacaacctgttggcagcttgcgaatagactcactaaaaatgccaaTttttttttttaattctatgcagacactgatgagttagatccaacgttccagacatctcccggccgaaccccccccccccccccaccacgcatcgcctccaccacccccatcacgccgctgtcgccgtcgccgtcgccgtcgccatcccgctgctcgtctccgttgccgtccccgcccctccgcccccgatctacgcctgggcgcccgcctccgcgcccctagatcaccgtcggcctgagtcgccgggctcgtcgtcgccaagccgatcccctccgcagggaggtgcagaaaccctcctcccctactggtcttttccttttccagtttgattcttgcaagttctagagactgatacaatcatgtaatttggaattcaaagttatgtgcacttagaaataataattttgctcatactcaccaaatccctttgattcactggacactcaagtgcaatattgaatccatcaacataacggaatcaaatactggagaggattggaacagattacccccatcaagttggtgaaataaaggagcaattaggacgaccaataaatctgctaatggaacacataatgaacagaaattccttagagcttggagtaatattagcactacagtcactatctttgaaaacgatcaggggagcattcattaccttggcccatgctaacatcagttactcctccactttgactggaacacctcaacacatgtgtcatcattagtttgaacctgtgaacgatgagtttgctattcacttcagggaagtaagctttagttggaaaccttggagcttatgatatcaatctaaaagaccattgagctaaatatatgcaaatctggagttgatttggcaaccacaaaaccaactgatataaatccttgagtccatgtatgaagaaaccacacttcatttttggtgaagccacaaataaaccataaaaatgatcaaagacatacaatactgtggtattagtacaattccaatttacaaaaattgaacgaatcatgcatcacaagcactgtttacagaattttggctctgttcatagagaacagatcttcaaagcaaaattcatcctctatttccaattattaTttttttgggctttgattcactcatagtagagaaataagagacgcaatagcactgcctgggcattatttgagaagaatgagaaacctatatgtaaattgtccatcctttttctgtacttatagtagcaaatcaatagctcaactaataatgtcattgaccaatggcaaaaaaaaatagatcctataagactgatgtttgaataacccaattaatcaatttttcacctataattttgtaattccatcatagcacaaatgagagagctatgaggtctaacaagaaagaaacataaaccacatcgtttcctttctttttagagcagcacaaatgagaaagagctatgaggtctaa
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| CDS seq | atggcggcgccgccggaggcgacgggggcgccgccccagactgaaggacggcgtcgagaggtcttctccagagcggtgcacgccatctcggagctcacagccggggagcccgagccgaacttccctaacaccgaagtcgagcggctcgcctcttcattaactttcctcagatccaacgttccagacatctcccggccgaaccccccccccccccccaccacgcatcgcctccaccacccccatcacgccgctgtcgccgtcgccgtcgccgtcgccatcccgctgctcgtctccgttgccgtccccgcccctccgcccccgatctacgcctgggcgcccgcctccgcgcccctagatcaccgtcggcctgagtcgccgggctcgtcgtcgccaagccgatcccctccgcagggagcacaaatgagaaagagctatgaggtctaa
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| Protein seq | MAAPPEATGAPPQTEGRRREVFSRAVHAISELTAGEPEPNFPNTEVERLASSLTFLRSNVPDISRPNPPPPPTTHRLHHPHHAAVAVAVAVAIPLLVSVAVPAPPPPIYAWAPASAPLDHRRPESPGSSSPSRSPPQGAQMRKSYEV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0013000 | OsNaBo_07g0013000.01 | Chr07 | 15098058 | 15102377 | + | NAM | ||
| CDS seq | atggcggcgccgccggaggcgacgggggcgccgccccagactgaaggacggcgtcgagaggtcttctccagagcggtgcacgccatctcggagctcacagccggggagcccgagccgaacttccctaacaccgaagtcgagcggctcgcctcttcattaactttcctcagatccaacgttccagacatctcccggccgaaccccccccccccccccaccacgcatcgcctccaccacccccatcacgccgctgtcgccgtcgccgtcgccgtcgccatcccgctgctcgtctccgttgccgtccccgcccctccgcccccgatctacgcctgggcgcccgcctccgcgcccctagatcaccgtcggcctgagtcgccgggctcgtcgtcgccaagccgatcccctccgcagggagcacaaatgagaaagagctatgaggtctaa
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| Protein seq | MAAPPEATGAPPQTEGRRREVFSRAVHAISELTAGEPEPNFPNTEVERLASSLTFLRSNVPDISRPNPPPPPTTHRLHHPHHAAVAVAVAVAIPLLVSVAVPAPPPPIYAWAPASAPLDHRRPESPGSSSPSRSPPQGAQMRKSYEV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.187857 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0454400 | SBH | 3.390697 | 3.528822 | 3.294977 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0454400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0013440 | SBH | 1.071457 | 3.162438 | 8.268978 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0013340 | SBH | 0.660241 | 0.000000 | 2.134932 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0013310 | RBH | 0.992993 | 20.722521 | 12.213186 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0013220 | SBH | 0.103289 | 0.347647 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0013100 | SBH | 3.906296 | 4.404607 | 10.412888 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0261500 | SBH | 2.8001615 | 12.739591 | 10.171439 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0013590 | SBH | 0.181483 | 0.319915 | 1.550480 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0267400 | SBH | 2.162531 | 5.6399485 | 7.0603535 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0013060 | SBH | 0.000000 | 0.170960 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0013140 | SBH | 0.491905 | 9.949519 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0013160 | SBH | 4.705338 | 7.942612 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0013370 | RBH | 0.056945 | 0.327918 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0013190 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
