Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_07g0013190 | OGI:07044190 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr07:16368981-16372549 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggcgccgccGgaggcgacgggggcgccgccccagactgaaggacggcgtcgaggtctgcgtatttgacgagtcaccagaggtcttctccagagcggtgcacgccatctcggagctcacagccgggaagcccgagccgaacttccctaacaccgaagtcgagcggctcgcctcttcattaactttcctcaggtgagaaactccctccttgctctgtctaatccggtacctaatcactgcggcAaaattggtaactttctattgttggcctatttagctgggtggagtggacgaatttgtgtttaatagtatcgtttatcagcAaagcattaatttgttagtcattgatgcaatttcacggagcttttaatgggaaaacttatgtggcatataagctctctttaatttattcattgccttatgtgccacacgcggtggtaaattttattggaatttgttaatttagatcccaagacatcgctgccacacaaataggaaataagcagttgtcacaggaatgctttggtgccgtttcattattcgtgttgtggctattagaattcatttggcttttgccactgcaattgaccatattcttacttccagtgtccttaggtaataatatcggctcaatgcacaattctgtttttctattaattagagcgatacatggtttttttttcatgtcgtaaacaaaatgcacttgcattgttagttGttttactactaattcactaagtttaagtcacttttgttctggtagatatatttccttaatctgtactcatccgttgtttgatgactctcatcgatgatcatttttgcacattgtgactttctagcttaccatttgatgttatggtttacggtacagaGgagtagcgaaacttgatcccctttatatagaagccactaagtcagtgagccccacctttatttgtgaagactacttgttagctgttactactctgtattcaggattgacagattcagtaacaactttagttattagcaacctatagtagcatgctataactagtattattaaccttgctggcttttatagagcaattacacatactgttgtctctagaaatacagtgttattcttggataatttatggaatggatgattcagaagtcagaagctaaaaaaaataccctcatttatgcaatcatgcattcaacataaatgaatcagtaaaggctatgtgcgcaaaacctctagaagattctttcaagtacgcctttataacagctgaagcatacagtgaatttcagttgttacaaatggaaatctagttagttctgcatatgccaatggggaattggggattctaggagctacatttggggagcatAaagatacacagctcaaaagttctgtaaggctaattttgttggttctcctcaagaccatttaaattgttatggAaaacaaactaaccaagtgtgtcatgaaaatcaaagttttcatatggctactcttttatgatagattgaacaccaaagatatgcttgacaaaaagaattgtgcttcaaaagatgctaacatctcttatgttctgcgctcaactagtataagggagattttgatacatcttttttcatgtgcccttttagttgaaggcctggacaagaactggattcagatggaatattaatttaaatttgtttcaaatgattgttctaccaagaatcggcttgaaaagaaaaggtttcctaaagattatgtgcattgcatgttggcacatttggaagcagaggaatgaatttaccataatatcaacccatcggtggatcaatggtttcaaaacttcaaagcatatgtgtaggatgaatgagcctttaagatctatagtctttgattagttacataacttgttaaaattccgttttgtaattgtaactagactctatatctatttcttatactagcaaaagggcacgtgcattgcaacaggaaactataattataataaacgttagataattcatgttaatctttgtgattcgagccctttaagagaaatattgttattatggatcttaacttgtaaaatagtaacgagaaattgtaacataagctttagatcatttaggAaaaaaacttacgtactattgaaatgaataacatggcataacttctattgtccctatgtttttactcgctccatgttgttattgtgcatttgattcgtgtaatgtgaccttgcctttgtcatgtgatcaagaggttaagaaagtgagagtggttggctgacggccaagtgtggtgatggcagcaaggatagagggggcgaggcagtggcacgcctaactctaaccaacgagagcaagagaagagcagagccaaaaattagacactaacatggttagcaaactggatcatgtgtgtcgtgtgttgtaatttggttttggaaacaaaaagatataatatagacatcgtgaaggaacgcaatcttgatggaacactcaaacccaatcaacttaaatatataataaaaattattgtagcctacctatctcaaatgttgacaagtataaggctgtagccaatcaatgtatgcaccaaagttgaaaggaaagagccattgccaaactatataaattactatgaaatttacactcactatattacagtctccagctaatcagaatcaatcaattgggaatactgtcaggccaacgccaagcagttataatttatataggaatatagagtgcaatccattcttttttacattgtatGtaatcaaattacattcaaattttaattttactgtgcataaaattcacatgttaatgctgtaTttctggttaatgctctacattccttagaccctgtttagatgggactaaaactagttttaagtccctatcacattggatgtttgaaaattaattataaatattaaacgtagactattaataaaacccatctataatcttggactaattcacgagacgaatctattgagtctaattaatccatgattagcctatgtgatgctacagtaaacattctctaattatagattaattaggcttaaaaaaattatcacgcgaattagctttcatttatgtaattagttttgtaagtagtctatatttaatactctaaattagtgtctaaatatagggactaaagttaagtccctggatccaaacaccaccttagtatgtagagcccccacaacctgttggcagcttgcgaatagactcactaaaaatgccaattttttttttAattctatgcagacactgatgagttagatccaacgtcccagacatctcccggccgcaccccccccccccccaccacgcatcgcctccaccacccccatcacgccgctgtcgccgtcgccgtcgccgtcgccatcccgctgctcgtctccgttgccgtccccgcccctccgcccccgatctactcctgggcgcccgcctccgcgcccctagatcaccgtcggcctgagtcgccgggctcgtcgtcgccaagccgatcccctccgcagggaggtgcagaaaccctcctcccctactggtcttttccttttccagtttga
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| CDS seq | atggcggcgccgccGgaggcgacgggggcgccgccccagactgaaggacggcgtcgagacactgatgagttagatccaacgtcccagacatctcccggccgcaccccccccccccccaccacgcatcgcctccaccacccccatcacgccgctgtcgccgtcgccgtcgccgtcgccatcccgctgctcgtctccgttgccgtccccgcccctccgcccccgatctactcctgggcgcccgcctccgcgcccctagatcaccgtcggcctgagtcgccgggctcgtcgtcgccaagccgatcccctccgcagggaggtgcagaaaccctcctcccctactggtcttttccttttccagtttga |
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| Protein seq | MAAPPEATGAPPQTEGRRRDTDELDPTSQTSPGRTPPPPTTHRLHHPHHAAVAVAVAVAIPLLVSVAVPAPPPPIYSWAPASAPLDHRRPESPGSSSPSRSPPQGGAETLLPYWSFPFPV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0013190 | OsLaMu_07g0013190.01 | Chr07 | 16368981 | 16372549 | + | NAM | ||
| CDS seq | atggcggcgccgccGgaggcgacgggggcgccgccccagactgaaggacggcgtcgagacactgatgagttagatccaacgtcccagacatctcccggccgcaccccccccccccccaccacgcatcgcctccaccacccccatcacgccgctgtcgccgtcgccgtcgccgtcgccatcccgctgctcgtctccgttgccgtccccgcccctccgcccccgatctactcctgggcgcccgcctccgcgcccctagatcaccgtcggcctgagtcgccgggctcgtcgtcgccaagccgatcccctccgcagggaggtgcagaaaccctcctcccctactggtcttttccttttccagtttga
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| Protein seq | MAAPPEATGAPPQTEGRRRDTDELDPTSQTSPGRTPPPPTTHRLHHPHHAAVAVAVAVAIPLLVSVAVPAPPPPIYSWAPASAPLDHRRPESPGSSSPSRSPPQGGAETLLPYWSFPFPV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0013340 | SBH | 0.660241 | 0.000000 | 2.134932 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0013310 | RBH | 0.992993 | 20.722521 | 12.213186 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0013220 | SBH | 0.103289 | 0.347647 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0267400 | SBH | 2.162531 | 5.6399485 | 7.0603535 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0013370 | RBH | 0.056945 | 0.327918 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0013000 | RBH | 1.187857 | 0.000000 | 0.000000 |
