Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_07g0003440 | OGI:07009300 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr07:3245950-3247797 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagtgcatgtgcatcaagtacttgagtagaagctgaatatttcagaacatgtgtgttcatctcaagtatagaagtgtcaaaactgctgatcatatttacctcttgcaataagttcttcaccataattttaatttggaaagtcctctcattccttatcagttcaagcaatttcctcacggacccacatcttgctccagcctctgaaacatgtagtatatgtgaaccattcccgatgtcaagctcatgcctgacaaatgctcttgctggcctgacaactgtatgcctgtcttggtcactgtacacagtaccagcccacccaaacttaaccatctcatggcaaactagaatggccaaagcttcaagacatgtaaggccaacaatatgccccagatgatagcagtgtactagagaccaactattcaacagaattatgtcaattgaggtcctgttgtcacttggattccaaggtttgcataagatttgttcttgcccattaatatgctcctgcaggctagatactgcagccattgtgcaactttcctgattcaacaaattccactgctccatcctagcacatagactcattcccactctagttttccagcacttgcattgcgcagcctgaacaaaagtatttctacaatttgtttgatttggtggaggccatggcttcaactcaccacggtgcaaattaatatccttcacctcagtgagaatcattacattaccttgacataccaatgcaagacaacttacttcggtaggtggcggccaaggtggcaaatgatgtacccttgcccaattgagtttgaattctggaccagccataggctgcaaatcccatccattaatcactccatcacaggttggaggtggccatggtggcatcaaacctacacttgtccaaaaggaatcgagtacataccatgggatgtgccacaactcccctcctctaaccacaccacctgaccagggaggtggccaaggatctctcttgggatgccccaccagcaacttcttgatagttttgaggcatttcatcaaacactcagtgggcatcagcttggcaaggtccatttcagcgatcaaccatggcgacgagacttcggatgatgcatcaggtaatacaacaccctcaggcacacccatcatgatctggcatgtgaccctggcgtggtctgcgccgcccttgacatcaaggccaacagtcgaacagttggcgggcatcgccttggtactatcagggatgtcaatgttggtgctgccagtggtgccgtcaatagttaccagctccattgatgacacggcaagggtggcgcaagtaaccacagtagccacagtgtgatcgggcttggtgtcggagctggaacatatcgtcgaacacttggtggcgtgaccttgggaaggtccttggcggcaatgtaggggacaggatccttgtcctcgacgtccccaagctcgaaggcaaccatcggggcaggtacctcgcggatgtgacttgaattcactgccacccaattgatgttgtttttgtggcattccatcaaacagttggtgggcgctggaggaggtggtgccataggtgtcgaagatgatgcagccttgagaatggcggtggttgccctgatggcagcaatcgtctcctcggaagccttgctcctacgagcctctatctcctccaacttctgaaaaatttgattgagcttgtcctcttgccggcgcttggcctccatttgttcaaacttctccaatatccgatccaaagcttcatctagccatttctcctctttattcatggtggtattgatgggaacgagctcagatatcctctgatcttccttggacat
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| CDS seq | atgtccaaggaagatcagaggatatctgagctcgttcccatcaataccaccatgaataaagaggagaaatggctagatgaagctttggatcggatattggagaagtttgaacaaatggaggccaagcgccggcaagaggacaagctcaatcaaatttttcagaagttggaggagatagaggctcgtaggagcaaggcttccgaggagacgattgctgccatcagggcaaccaccgccattctcaaggctgcatcatcttcgacacctatggcaccacctcctccagcgcccaccaactgtttgatggaatgccacaaaaacaacatcaattgggtggcagtgaattcaagtcacatccgcgaggtacctgccccgatggttgccttcgagcttggggacgtcgaggacaaggatcctgtcccctacattgccgccaaggaccttcccaagctggtaactattgacggcaccactggcagcaccaacattgacatccctgatagtaccaaggcgatgcccgccaactgttcgactgttggccttgatgtcaagggcggcgcagaccacgccagggtcacatgccagatcatgatgggtgtgcctgagggtgttgtattacctgatgcatcatccgaagtctcgtcgccatggttgatcgctgaaatggaccttgccaagctgatgcccactgagtgtttgatgaaatgcctcaaaactatcaagaagttgctggtggggcatcccaagagagatccttggccacctccctggtcaggtggtgtggttagaggaggggagttgtggcacatcccatgcctatggctggtccagaattcaaactcaattgggcaagggtacatcatttgccaccttggccgccacctaccgaaaaatacttttgttcaggctgcgcaatgcaagtgctggaaaactagagtgggaatgagtctatgtgctaggatggagcagtggaatttgttgaatcaggaaagttgcacaatggctgcagtatctagcctgcaggagcatattaatgggcaagaacaaatcttatgcaaaccttggaatccaagtgacaacaggacctcaattgacataattctgttgaatagttggtctctagtacactgctatcatctggggcatattgttggccttacatgtcttgaagctttggccattctagtttgccatgagatggttaagtttgggtgggctggtactgtgtacagtgaccaagacaggcatacagttgtcaggccagcaagagcatttgtcaggcatgagcttgacatcgggaatggttcacatatactacatgtttcagaggctggagcaagatgtgggtccgtgaggaaattgcttgaactgataaggaatgagaggactttccaaattaaaattatggtgaagaacttattgcaagagcttctactcaagtacttgatgcacatgcactga
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| Protein seq | MSKEDQRISELVPINTTMNKEEKWLDEALDRILEKFEQMEAKRRQEDKLNQIFQKLEEIEARRSKASEETIAAIRATTAILKAASSSTPMAPPPPAPTNCLMECHKNNINWVAVNSSHIREVPAPMVAFELGDVEDKDPVPYIAAKDLPKLVTIDGTTGSTNIDIPDSTKAMPANCSTVGLDVKGGADHARVTCQIMMGVPEGVVLPDASSEVSSPWLIAEMDLAKLMPTECLMKCLKTIKKLLVGHPKRDPWPPPWSGGVVRGGELWHIPCLWLVQNSNSIGQGYIICHLGRHLPKNTFVQAAQCKCWKTRVGMSLCARMEQWNLLNQESCTMAAVSSLQEHINGQEQILCKPWNPSDNRTSIDIILLNSWSLVHCYHLGHIVGLTCLEALAILVCHEMVKFGWAGTVYSDQDRHTVVRPARAFVRHELDIGNGSHILHVSEAGARCGSVRKLLELIRNERTFQIKIMVKNLLQELLLKYLMHMH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0003440 | OsNaBo_07g0003440.01 | Chr07 | 3245950 | 3247797 | - | NAM | ||
| CDS seq | atgtccaaggaagatcagaggatatctgagctcgttcccatcaataccaccatgaataaagaggagaaatggctagatgaagctttggatcggatattggagaagtttgaacaaatggaggccaagcgccggcaagaggacaagctcaatcaaatttttcagaagttggaggagatagaggctcgtaggagcaaggcttccgaggagacgattgctgccatcagggcaaccaccgccattctcaaggctgcatcatcttcgacacctatggcaccacctcctccagcgcccaccaactgtttgatggaatgccacaaaaacaacatcaattgggtggcagtgaattcaagtcacatccgcgaggtacctgccccgatggttgccttcgagcttggggacgtcgaggacaaggatcctgtcccctacattgccgccaaggaccttcccaagctggtaactattgacggcaccactggcagcaccaacattgacatccctgatagtaccaaggcgatgcccgccaactgttcgactgttggccttgatgtcaagggcggcgcagaccacgccagggtcacatgccagatcatgatgggtgtgcctgagggtgttgtattacctgatgcatcatccgaagtctcgtcgccatggttgatcgctgaaatggaccttgccaagctgatgcccactgagtgtttgatgaaatgcctcaaaactatcaagaagttgctggtggggcatcccaagagagatccttggccacctccctggtcaggtggtgtggttagaggaggggagttgtggcacatcccatgcctatggctggtccagaattcaaactcaattgggcaagggtacatcatttgccaccttggccgccacctaccgaaaaatacttttgttcaggctgcgcaatgcaagtgctggaaaactagagtgggaatgagtctatgtgctaggatggagcagtggaatttgttgaatcaggaaagttgcacaatggctgcagtatctagcctgcaggagcatattaatgggcaagaacaaatcttatgcaaaccttggaatccaagtgacaacaggacctcaattgacataattctgttgaatagttggtctctagtacactgctatcatctggggcatattgttggccttacatgtcttgaagctttggccattctagtttgccatgagatggttaagtttgggtgggctggtactgtgtacagtgaccaagacaggcatacagttgtcaggccagcaagagcatttgtcaggcatgagcttgacatcgggaatggttcacatatactacatgtttcagaggctggagcaagatgtgggtccgtgaggaaattgcttgaactgataaggaatgagaggactttccaaattaaaattatggtgaagaacttattgcaagagcttctactcaagtacttgatgcacatgcactga
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| Protein seq | MSKEDQRISELVPINTTMNKEEKWLDEALDRILEKFEQMEAKRRQEDKLNQIFQKLEEIEARRSKASEETIAAIRATTAILKAASSSTPMAPPPPAPTNCLMECHKNNINWVAVNSSHIREVPAPMVAFELGDVEDKDPVPYIAAKDLPKLVTIDGTTGSTNIDIPDSTKAMPANCSTVGLDVKGGADHARVTCQIMMGVPEGVVLPDASSEVSSPWLIAEMDLAKLMPTECLMKCLKTIKKLLVGHPKRDPWPPPWSGGVVRGGELWHIPCLWLVQNSNSIGQGYIICHLGRHLPKNTFVQAAQCKCWKTRVGMSLCARMEQWNLLNQESCTMAAVSSLQEHINGQEQILCKPWNPSDNRTSIDIILLNSWSLVHCYHLGHIVGLTCLEALAILVCHEMVKFGWAGTVYSDQDRHTVVRPARAFVRHELDIGNGSHILHVSEAGARCGSVRKLLELIRNERTFQIKIMVKNLLQELLLKYLMHMH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45120 | SBH | 0.424760 | 0.541817 | 0.148317 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0003630 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0003600 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0003510 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0003450 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0003540 | RBH | 0.0 | 0.000000 | 0.975754 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0051500 | RBH | 0.445399 | 0.677616 | 0.209534 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0004070 | RBH | 0.060834 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0055800 | RBH | 0.4024775 | 0.716572 | 3.5540745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0003550 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0003540 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0003580 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0003610 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0003530 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G003640 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
