Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0027390 | OGI:06081690 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:29946846-29948588 | ||||||||
| Gene Symbol | prx93, prx92 | ||||||||||
| DNA seq | atgaggagcttccatttcctcgttgtcctcgcgctggcgatggcgatctcatcgccattggtggcggcgaacctgaggaagaactactacgccaagatctgcccgaacctcgagaacatcgtgcgcgggtccgtgcagaggtcgatgcagcagtcgccgatcgcggcgccggcgacgctgaggctcttcttccacgactgcgccgtccgcgggtgcgacgcgtcgatcatgatcgtcaacccgaacggcgacgacgagtggaggaaccccgacgaccagacgctgaagccggaggggttcacgacggtgatagccgccaaggccgccgtcgacagcgacccccagtgccggaacagggtgtcctgcgccgacatcttggccctcgccaccagagactccgtcttcctggtaactcacactcacttgcctgtatctaccctaccttaccggcccatttttgcgcggtatcgagttacaatcttaaagcctaagttgatgagaaaaatcgaataattcactttatattccaacacgcacaaatggttctggaattcattctctcggagggccgtatgtggtcttctgctgatgttgctattttgaggggcttgttggtagtgtagtgtggctctgccctcctttccgctgattggagttccgtttagctgccacagtagtttttctttttcctagctacagtttttgttttgctttttctttcttcttttaacataggtctgtctgaccaattacgttgtgtaaaaaaaaaactcttctccttccaatatattgacgtgcaatcttttttgcgcgttcgtgaaaaaagaatggccattgatggcttggctgcatgatgcagagtggagggccgaactacgcggtggagctcggcaggttcgacggcagggtgtcgaccaggaacagcgtcaacctgcctcatggcaacttcaacctcgaccagctcaccggctacttcggcagcctcggcctcagccccaccgacatggtcgccctctccggtacgttgccatggcagcagctacatgcacagcaatggcggcggcggcggcggcgcgtgtgatgtgacaacgatgtcttgtcgaatttgtttttcagggggtcacaccatcggggcggcgtcgtgcaacttcttcggctacaggctcggcggcgacccgaccatggaccccaacttcgcggcgatgctgcgcggcagctgcggctccagcggcttcgcgttcctcgacgccgcgacgccgctccggttcgacaacgccttctaccagaacctccgcgccggccgcggcctcctcggctccgaccagacgctctactccgacccgaggtcccgcggcctcgtcgaccgctacgccgccaaccagggcgccttcttcaacgacttcgtcgccgccatgaccaagctcggcagggtcggcgtcaagtcgccggccaccggcggcgagatccgccgcgactgcaggttccccaactgatgacatggcacacgatgcgttgcacacgtgcgagatctacctcgagggggatgcaggcctctgcacttgtgcagggtgcatgttcttggagggcaattgggcgatggatggcaatctttccttttggatttggaaaaaaaagaaacggtagtagtcgtacattattgtgtgttcaaaatttaagttgtttttgtcaacgatccgaataagttgtaatatacaacgatgtaaaagtgatttgtttgattaa
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| CDS seq | atgaggagcttccatttcctcgttgtcctcgcgctggcgatggcgatctcatcgccattggtggcggcgaacctgaggaagaactactacgccaagatctgcccgaacctcgagaacatcgtgcgcgggtccgtgcagaggtcgatgcagcagtcgccgatcgcggcgccggcgacgctgaggctcttcttccacgactgcgccgtccgcgggtgcgacgcgtcgatcatgatcgtcaacccgaacggcgacgacgagtggaggaaccccgacgaccagacgctgaagccggaggggttcacgacggtgatagccgccaaggccgccgtcgacagcgacccccagtgccggaacagggtgtcctgcgccgacatcttggccctcgccaccagagactccctcggcaggttcgacggcagggtgtcgaccaggaacagcgtcaacctgcctcatggcaacttcaacctcgaccagctcaccggctacttcggcagcctcggcctcagccccaccgacatggtcgccctctccgggggtcacaccatcggggcggcgtcgtgcaacttcttcggctacaggctcggcggcgacccgaccatggaccccaacttcgcggcgatgctgcgcggcagctgcggctccagcggcttcgcgttcctcgacgccgcgacgccgctccggttcgacaacgccttctaccagaacctccgcgccggccgcggcctcctcggctccgaccagacgctctactccgacccgaggtcccgcggcctcgtcgaccgctacgccgccaaccagggcgccttcttcaacgacttcgtcgccgccatgaccaagctcggcagggtcggcgtcaagtcgccggccaccggcggcgagatccgccgcgactgcaggttccccaactga
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| Protein seq | MRSFHFLVVLALAMAISSPLVAANLRKNYYAKICPNLENIVRGSVQRSMQQSPIAAPATLRLFFHDCAVRGCDASIMIVNPNGDDEWRNPDDQTLKPEGFTTVIAAKAAVDSDPQCRNRVSCADILALATRDSLGRFDGRVSTRNSVNLPHGNFNLDQLTGYFGSLGLSPTDMVALSGGHTIGAASCNFFGYRLGGDPTMDPNFAAMLRGSCGSSGFAFLDAATPLRFDNAFYQNLRAGRGLLGSDQTLYSDPRSRGLVDRYAANQGAFFNDFVAAMTKLGRVGVKSPATGGEIRRDCRFPN |
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| Function | Peroxidase 16 [UniProtKB/Swiss-Prot:Q96518] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0027390 | OsNaBo_06g0027390.01 | Chr06 | 29946846 | 29948588 | + | NAM | ||
| CDS seq | atgaggagcttccatttcctcgttgtcctcgcgctggcgatggcgatctcatcgccattggtggcggcgaacctgaggaagaactactacgccaagatctgcccgaacctcgagaacatcgtgcgcgggtccgtgcagaggtcgatgcagcagtcgccgatcgcggcgccggcgacgctgaggctcttcttccacgactgcgccgtccgcgggtgcgacgcgtcgatcatgatcgtcaacccgaacggcgacgacgagtggaggaaccccgacgaccagacgctgaagccggaggggttcacgacggtgatagccgccaaggccgccgtcgacagcgacccccagtgccggaacagggtgtcctgcgccgacatcttggccctcgccaccagagactccctcggcaggttcgacggcagggtgtcgaccaggaacagcgtcaacctgcctcatggcaacttcaacctcgaccagctcaccggctacttcggcagcctcggcctcagccccaccgacatggtcgccctctccgggggtcacaccatcggggcggcgtcgtgcaacttcttcggctacaggctcggcggcgacccgaccatggaccccaacttcgcggcgatgctgcgcggcagctgcggctccagcggcttcgcgttcctcgacgccgcgacgccgctccggttcgacaacgccttctaccagaacctccgcgccggccgcggcctcctcggctccgaccagacgctctactccgacccgaggtcccgcggcctcgtcgaccgctacgccgccaaccagggcgccttcttcaacgacttcgtcgccgccatgaccaagctcggcagggtcggcgtcaagtcgccggccaccggcggcgagatccgccgcgactgcaggttccccaactga
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| Protein seq | MRSFHFLVVLALAMAISSPLVAANLRKNYYAKICPNLENIVRGSVQRSMQQSPIAAPATLRLFFHDCAVRGCDASIMIVNPNGDDEWRNPDDQTLKPEGFTTVIAAKAAVDSDPQCRNRVSCADILALATRDSLGRFDGRVSTRNSVNLPHGNFNLDQLTGYFGSLGLSPTDMVALSGGHTIGAASCNFFGYRLGGDPTMDPNFAAMLRGSCGSSGFAFLDAATPLRFDNAFYQNLRAGRGLLGSDQTLYSDPRSRGLVDRYAANQGAFFNDFVAAMTKLGRVGVKSPATGGEIRRDCRFPN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 5.977706 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0695200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g48010 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0695200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027580 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0027370 | SBH | 0.0 | 4.905889 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027510 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027080 | RBH | 0.0 | 0.106009 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027590 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0457900 | RBH | 0 | 0.0866765 | 0.0977685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026980 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0440400 | RBH | 0.0113635 | 0.5043905 | 0.0069035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027480 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027550 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027140 | SBH | 0.0 | 2.511586 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027790 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027410 | SBH | 0.0 | 1.062610 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027310 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027400 | RBH | 0.0 | 12.107003 | 0.606113 |
