Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0027480 | OGI:06081710 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:30560416-30561598 | ||||||||
| Gene Symbol | prx93, prx92 | ||||||||||
| DNA seq | tcagttggggaacctgcagtcgcggcggatctcgccgccggtggccggcgacttgacgccgaccctgccgagcttggtcatggcggcgacgaagtcgttgaagaaggcgccctggttggcggcgtagcggtcgacgaggccgcgggacctcgggtcggagtagagcgtctggtcggagccgaggaggccgcggccggcgcggaggttctggtagaaggcgttgtcgaaccggagcggcgtcgcggcgtcgaggaacgcgaagccgctggagccgcagctgccgcgcagcatcgccgcgaagttggggtccatggtcgggtcgccgccgagcctgtagccgaagaagctgcaggacgccgccccgatggtgtgaccccctgaaaaacaaattccacaagacatcgttgtcacatcacacgcgtcgccgccgccgccattgctgtgcacgtagctgctgccatggcaacgtaccggagagggcgaccatgtcggtggggctgaggccgaggctgccgaagtagccggtgagctggtcgaggttgaagttgccatgaggcaggttgacgctgttcctggtcgacaccctgccgtcgaacctgccgagctccaccgcgtagttcggccctccactctgcatcatgcagccaacccatcaatggccattcgtgcgtgttcgaatataaactaaattgccagttttctcttatgagctaaaacatttgagttaaactggtcggtgcatgcaactcgatacagataagtgagtgtgagttaccaggaagacggagtctctagtggcgagggccaagatgtcggcgcaggacaccctgttccggcactgggggtcgctgtcgacggcggccttggcggctatcaccgtcgtgaacccctccggcttcagcgtctggtcgtcggggttcctccactcgtcgtcgccgttcgggttgatgatcatgaccgacgcgtcgcacccgcggacggcgcagtcgtggaagaagagcctcagcgtcgccggcgccgcgatcggcgactgctgcatcgacctctgcacggacccgcgcacgatgttctcgaggttcgggcagatgctggcgtagtagttctgcctcagctgcgccgccgccaatggcgacgagatcgccaccgccagcgcgaggacgacgacgaaatggaagctcctcat
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| CDS seq | atgaggagcttccatttcgtcgtcgtcctcgcgctggcggtggcgatctcgtcgccattggcggcggcgcagctgaggcagaactactacgccagcatctgcccgaacctcgagaacatcgtgcgcgggtccgtgcagaggtcgatgcagcagtcgccgatcgcggcgccggcgacgctgaggctcttcttccacgactgcgccgtccgcgggtgcgacgcgtcggtcatgatcatcaacccgaacggcgacgacgagtggaggaaccccgacgaccagacgctgaagccggaggggttcacgacggtgatagccgccaaggccgccgtcgacagcgacccccagtgccggaacaggctcggcaggttcgacggcagggtgtcgaccaggaacagcgtcaacctgcctcatggcaacttcaacctcgaccagctcaccggctacttcggcagcctcggcctcagccccaccgacatggtcgccctctccgggggtcacaccatcggggcggcgtcctgcagcttcttcggctacaggctcggcggcgacccgaccatggaccccaacttcgcggcgatgctgcgcggcagctgcggctccagcggcttcgcgttcctcgacgccgcgacgccgctccggttcgacaacgccttctaccagaacctccgcgccggccgcggcctcctcggctccgaccagacgctctactccgacccgaggtcccgcggcctcgtcgaccgctacgccgccaaccagggcgccttcttcaacgacttcgtcgccgccatgaccaagctcggcagggtcggcgtcaagtcgccggccaccggcggcgagatccgccgcgactgcaggttccccaactga
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| Protein seq | MRSFHFVVVLALAVAISSPLAAAQLRQNYYASICPNLENIVRGSVQRSMQQSPIAAPATLRLFFHDCAVRGCDASVMIINPNGDDEWRNPDDQTLKPEGFTTVIAAKAAVDSDPQCRNRLGRFDGRVSTRNSVNLPHGNFNLDQLTGYFGSLGLSPTDMVALSGGHTIGAASCSFFGYRLGGDPTMDPNFAAMLRGSCGSSGFAFLDAATPLRFDNAFYQNLRAGRGLLGSDQTLYSDPRSRGLVDRYAANQGAFFNDFVAAMTKLGRVGVKSPATGGEIRRDCRFPN |
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| Function | Peroxidase 45 [UniProtKB/Swiss-Prot:Q96522] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0027480 | OsLima_06g0027480.01 | Chr06 | 30560416 | 30561598 | - | NAM | ||
| CDS seq | atgaggagcttccatttcgtcgtcgtcctcgcgctggcggtggcgatctcgtcgccattggcggcggcgcagctgaggcagaactactacgccagcatctgcccgaacctcgagaacatcgtgcgcgggtccgtgcagaggtcgatgcagcagtcgccgatcgcggcgccggcgacgctgaggctcttcttccacgactgcgccgtccgcgggtgcgacgcgtcggtcatgatcatcaacccgaacggcgacgacgagtggaggaaccccgacgaccagacgctgaagccggaggggttcacgacggtgatagccgccaaggccgccgtcgacagcgacccccagtgccggaacaggctcggcaggttcgacggcagggtgtcgaccaggaacagcgtcaacctgcctcatggcaacttcaacctcgaccagctcaccggctacttcggcagcctcggcctcagccccaccgacatggtcgccctctccgggggtcacaccatcggggcggcgtcctgcagcttcttcggctacaggctcggcggcgacccgaccatggaccccaacttcgcggcgatgctgcgcggcagctgcggctccagcggcttcgcgttcctcgacgccgcgacgccgctccggttcgacaacgccttctaccagaacctccgcgccggccgcggcctcctcggctccgaccagacgctctactccgacccgaggtcccgcggcctcgtcgaccgctacgccgccaaccagggcgccttcttcaacgacttcgtcgccgccatgaccaagctcggcagggtcggcgtcaagtcgccggccaccggcggcgagatccgccgcgactgcaggttccccaactga
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| Protein seq | MRSFHFVVVLALAVAISSPLAAAQLRQNYYASICPNLENIVRGSVQRSMQQSPIAAPATLRLFFHDCAVRGCDASVMIINPNGDDEWRNPDDQTLKPEGFTTVIAAKAAVDSDPQCRNRLGRFDGRVSTRNSVNLPHGNFNLDQLTGYFGSLGLSPTDMVALSGGHTIGAASCSFFGYRLGGDPTMDPNFAAMLRGSCGSSGFAFLDAATPLRFDNAFYQNLRAGRGLLGSDQTLYSDPRSRGLVDRYAANQGAFFNDFVAAMTKLGRVGVKSPATGGEIRRDCRFPN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0695300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g48010 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0695300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027580 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0027370 | RBH | 0.0 | 4.905889 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027520 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027090 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027600 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0458000 | RBH | 0 | 0.3126585 | 0.134711 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026990 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0440600 | RBH | 0.0504995 | 0.4373185 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027470 | RBH | 0.0 | 0.074021 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027550 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027140 | RBH | 0.0 | 2.511586 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027790 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027410 | RBH | 0.0 | 1.062610 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027320 | RBH | 0.0 | 4.001441 | 0.307224 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027400 | RBH | 0.0 | 12.107003 | 0.606113 |
