Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0011600 | OGI:06028590 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:9995719-9996588 | ||||||||
| Gene Symbol | DOF20, OsDof20, Dof20, OsDof-20 | ||||||||||
| DNA seq | atgcaggagttccaccccgtccccgggctggccggccggctgttcggcggcgcggcggcggcggcggcggtggcggcggtggaggaggtgcggtgcccgcggtgcgactcgtcgaacaccaagttctgctactacaacaactacaacctctcccagccccgccacttctgcaaggcgtgccgccgctactggaccaagggcggcctcctccgcaacgtccccgtcggcggcggctgccgcaagcccaagcgcccggcgccgccgccgtcgtcctccttcaccggcggcggcggcggcggcggcgggtgtggccatcgcgactccaagagcgcacgctcagccggcggcggcggcgacggctcgggctcgaccgcgagcgccacggcgacccccgctgcggcgcctgcgtcgtcgaacaccttgtctgctgctgtttcccagccaagcagcgtcgacgcgctgtcgccgcctccggcgccgatgttcgccgaccaggccacggcgttcgcgtcgctcttcgcgccgccgccgccgccaccgtcgcaggcgctcccggccttcgcgagcttcacggcgcagcccaaggcagaggaggacgtcgccgacgcacctgcgctcgcagccacggagcagcaccggtcgtcctcggcggcgtcgttcgccgcacacagcatctcgccgccgttcgccgccgcacggtcctcggatgggccggcagcggctgccgccgccgccgccgccgactgggcgcctccgacggcggtgctcgacgccgggatgttcgacctcgccggcgccatcggcggcgacacgtcgtactggaacgcggcgagctggactgaccacgacggcacgatctacctgccgtag
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| CDS seq | atgcaggagttccaccccgtccccgggctggccggccggctgttcggcggcgcggcggcggcggcggcggtggcggcggtggaggaggtgcggtgcccgcggtgcgactcgtcgaacaccaagttctgctactacaacaactacaacctctcccagccccgccacttctgcaaggcgtgccgccgctactggaccaagggcggcctcctccgcaacgtccccgtcggcggcggctgccgcaagcccaagcgcccggcgccgccgccgtcgtcctccttcaccggcggcggcggcggcggcggcgggtgtggccatcgcgactccaagagcgcacgctcagccggcggcggcggcgacggctcgggctcgaccgcgagcgccacggcgacccccgctgcggcgcctgcgtcgtcgaacaccttgtctgctgctgtttcccagccaagcagcgtcgacgcgctgtcgccgcctccggcgccgatgttcgccgaccaggccacggcgttcgcgtcgctcttcgcgccgccgccgccgccaccgtcgcaggcgctcccggccttcgcgagcttcacggcgcagcccaaggcagaggaggacgtcgccgacgcacctgcgctcgcagccacggagcagcaccggtcgtcctcggcggcgtcgttcgccgcacacagcatctcgccgccgttcgccgccgcacggtcctcggatgggccggcagcggctgccgccgccgccgccgccgactgggcgcctccgacggcggtgctcgacgccgggatgttcgacctcgccggcgccatcggcggcgacacgtcgtactggaacgcggcgagctggactgaccacgacggcacgatctacctgccgtag
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| Protein seq | MQEFHPVPGLAGRLFGGAAAAAAVAAVEEVRCPRCDSSNTKFCYYNNYNLSQPRHFCKACRRYWTKGGLLRNVPVGGGCRKPKRPAPPPSSSFTGGGGGGGGCGHRDSKSARSAGGGGDGSGSTASATATPAAAPASSNTLSAAVSQPSSVDALSPPPAPMFADQATAFASLFAPPPPPPSQALPAFASFTAQPKAEEDVADAPALAATEQHRSSSAASFAAHSISPPFAAARSSDGPAAAAAAAAADWAPPTAVLDAGMFDLAGAIGGDTSYWNAASWTDHDGTIYLP |
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| Function | Dof zinc finger protein 4 [UniProtKB/Swiss-Prot:Q6Z345] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0011600 | OsNaBo_06g0011600.01 | Chr06 | 9995719 | 9996588 | + | NAM | ||
| CDS seq | atgcaggagttccaccccgtccccgggctggccggccggctgttcggcggcgcggcggcggcggcggcggtggcggcggtggaggaggtgcggtgcccgcggtgcgactcgtcgaacaccaagttctgctactacaacaactacaacctctcccagccccgccacttctgcaaggcgtgccgccgctactggaccaagggcggcctcctccgcaacgtccccgtcggcggcggctgccgcaagcccaagcgcccggcgccgccgccgtcgtcctccttcaccggcggcggcggcggcggcggcgggtgtggccatcgcgactccaagagcgcacgctcagccggcggcggcggcgacggctcgggctcgaccgcgagcgccacggcgacccccgctgcggcgcctgcgtcgtcgaacaccttgtctgctgctgtttcccagccaagcagcgtcgacgcgctgtcgccgcctccggcgccgatgttcgccgaccaggccacggcgttcgcgtcgctcttcgcgccgccgccgccgccaccgtcgcaggcgctcccggccttcgcgagcttcacggcgcagcccaaggcagaggaggacgtcgccgacgcacctgcgctcgcagccacggagcagcaccggtcgtcctcggcggcgtcgttcgccgcacacagcatctcgccgccgttcgccgccgcacggtcctcggatgggccggcagcggctgccgccgccgccgccgccgactgggcgcctccgacggcggtgctcgacgccgggatgttcgacctcgccggcgccatcggcggcgacacgtcgtactggaacgcggcgagctggactgaccacgacggcacgatctacctgccgtag
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| Protein seq | MQEFHPVPGLAGRLFGGAAAAAAVAAVEEVRCPRCDSSNTKFCYYNNYNLSQPRHFCKACRRYWTKGGLLRNVPVGGGCRKPKRPAPPPSSSFTGGGGGGGGCGHRDSKSARSAGGGGDGSGSTASATATPAAAPASSNTLSAAVSQPSSVDALSPPPAPMFADQATAFASLFAPPPPPPSQALPAFASFTAQPKAEEDVADAPALAATEQHRSSSAASFAAHSISPPFAAARSSDGPAAAAAAAAADWAPPTAVLDAGMFDLAGAIGGDTSYWNAASWTDHDGTIYLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.242927 | 2.587822 | 0.379402 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0284500 | RBH | 2.987751 | 2.981267 | 1.882967 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g17410 | RBH | 2.168797 | 2.004352 | 0.376487 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0284500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0011570 | RBH | 0.563260 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0011480 | RBH | 0.0 | 0.0 | 0.063143 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0011480 | RBH | 1.110810 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0011500 | RBH | 0.140597 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0011600 | RBH | 5.169788 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0165400 | RBH | 8.0704895 | 8.9713365 | 0.008717 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0011100 | RBH | 0.248942 | 0.000000 | 0.009800 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0162400 | RBH | 7.0302535 | 9.9666085 | 0.0383145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0011590 | RBH | 0.313641 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0011440 | RBH | 0.469301 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0011400 | RBH | 6.428633 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0011600 | RBH | 0.649252 | 0.0 | 0.293489 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011370 | RBH | 2.138848 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G011280 | RBH | 0.164100 | 0.0 | 0.017558 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0031830 | SBH | 8.311333 | 4.625292 | 12.275868 |
