Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0000730 | OGI:06001500 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:480673-484788 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaaaatcgtaaatcgagaaaaaagttctaaaatttAattctggtgcatttgtaatcgagtgtaaaagttcgatatacaataatacgaatcttgatgcaagatcctacatatgaaaaagtgaaagatactagcccaaaaatatgtcgcaagtaaaatagcaaaccaaaaaaacaaaaaacaaaaaaaaaaactagactcggttattaatactggtttatattgcctccctcgagcggttttaacagcggtttcatccgacatgatactcacagcttgttcaagatgcatgtgtatcatttctcacttgctccaactttgatccaacctttagattacgcaagaaagaggcaccactcatattgatggcatctaggacatccccagcttcagactccctgcctgaatgttcatagagatgaaatgcagcactcaggatgaagctatccggtttcagaagtcgacatgccgtttcgaagaacaagatgccatcatcgacgtaaccgtgatccagatgcatcctcatcatcgtccgacaacatgccaagtcagcaggtatgcctgcctcctccatttggttgtacatcctctgggcttcatcaatctgaccttccttcagaaaggcggaaatgagatggttgaaatgagtgcatgaaggggtcatgttgcttctcagcatcatctggatggcttcctcagctttggagtagcatttaccctcagtgtatgctctgatcaaagcaagatatgtgtgcgaatcaggcacatgattgtttttctgcatttcttggaatataatctctgcctcattgtgcaatcctgaagtggcataggcattgatcatggtgttgaagctgatctgcacattataagttaaggtccaaattacatattctggttaacctcaaggctaagtataccatttcttgctttgccactaacaaaaaggaatacctttccaggcctgataccatcttccttcattctactgaacagtaaggatgcctcatgatgcttccctgcagaaataacaatttagcactgaatagaatgaagagcaaaaaaataactaaaatgtaggatctctctttgatgcttttatcaaagttccttagatctgtgcacaatgcagggaaaatttaaattacctgcttttccatagaaactaagcatgtttgtgtatgttttctcatcaatcggtaagcctagttcctgtgcagcactaaacatttcaacagccttctccagctttcctccttggccataaacactgaatgagaaaaactgaaactaatgacataacgttctcagcaaaaaaacatcaaagggaaaaataaagcccagtttcctggcttgtttttctgaatattatctaccttatcattatattgaatgtctgcatggaccgaggaatgccagaagatatcatgcgatcatatatgctgacagctgagtacagtttgcctgcttggaagctaaagctgttacagttagctataacaccatgtgatctgaaatgttttcttctctacctaataaaaagacattatccagacctgattcaagcattgacttgataaaagtattatatacaacagtgtcgagctcagcttcatcgtgtaaacagcgatatatgatGttttctgcctcctgaaatttctctggaagtaacatcattacgtcagtgcaaatagaagtaaagtAaaatatatcggtaaaattacagtgcaatattgatgcatagtttttggcctctaaacagccagtcaatcagtcacaaattcatctggagcaatataagttatatagcagccaaagaaagcaaccgtcaaaaaaactcaccttgcttagtcaggtgtgtgacaagtatgcttattgtcacggcatctccattatgaccttgatcgatcaattccatgaaaagacgatatgcctcctcagttttgccacatctgcacaatgcatcaaccattgcattgtagacagatcctcctactggaaacgatgttgatgctgtctcaaacagtttttgtgcttgttccaactgctgggcctggccatattgtacaattaaagtagctattgcagtatcatcaggcttggctcccaattcagtaaggtgttcatagaggaatttggcctcatctgtactccctgcagaagaatccatgtagagccagcagtaagaagcagtatgttcaagcatgaatacaatgttatgtgcggcatctagcctcctcaccttccctagcaaatttcatgatcaattgggacacactggacaagccctcaggtttgtccaacaaggatttcaacatcatactaagtgttgaactatctgttggatttagcacctttgatgagctaccttcattctgaatcacttcagttaaattatccgtatccttatttatactggttttgcaacaaacttccaacacagtcacacatagatcctcatcaaactggagagcttccttcctcaTtttcagaatgagtgccctggccttgtctagatggccaagcctcatatataacctgagaagatcattacagcaaaacacatcgggcgggccataattggagagagctctgaaagcatcttcagcagcatccacatcttcctttgccacatgacatcggagaagagcactgtaggagaattgtgatggctttacatttctcgccctcatagcatccaaaacttgcaatgctctatcatagttttggacattcatatgaacttgagccattgccacataagtttgctcatcgctcaaaagacctgccttgtcaatctcctcgaacatacgctgcgcgtcctcataaagcccaagcttaccatatatcctaacaagaattccatagataacttcatcaggaacaatcttattctgctccatctcagagaacagcgaaagcgccttcgagtaatcctcattcttgtaatagagtgtcaggacagatgcacatgtgtagttgcttgggacaatactcttaaccttcatctcatcataaagccccaatgcctcttcccctttgccatgcttggcacacaagctgatcagaaggctgtatgtcgcctcctccggcacaaatctgcggcgcttcatctcaccaaatgcatccatggcctcctccaacataccttccttggcatatgacccgatcacaactgtatatgtgaactgatttggggcaacattggcttccagcatctgctcccacaggtggattaccttgccatgtaatttctgcttctgcagagatgagaccatgaaattgaagaccgagatggagggcacaatgtcgcggcggcgcaccgcggcgtagaacatcaacatgtcattgagcttcccccatcttgcgtacgcgcacaggagggttccacatgccactgcgtctggctcgcacccggcctgaagcatctcaagaaatgtcacctcggcgagcttgatcttcccaacctgaccgtacaatctgagaaggattgtgtaggcgacaacgctcggttcgtagcacagctggatggatcaagaaacaaattcatggtgatcagctcataaatcgaggtgaaatcgttaggaattcagaaaaaaaaagaggaaaagattcagtctctttgcttacctgaagcttcatccaggcgaagaaatcgcgggcctggcgccagccgcggagctcgtggagcacgaagcacatctcgcggaaggtgagcttcgcgacgaacgacgccatggcctcgcgcatgtcggcggaggaggggctggagcaggacgccgtggcgcgcgccgcgcggacggcggcgaccacgtggcggccgtacacgtggccggcgcggtcgtcctcgacgtagcgggccatctggtccggggtgcggcggacccaccggggcgtgtgcgcgccgctcccttgcccccggcgctcgcggcggaggcgctgcgcctcgtcgtggaggaggcgccggtacgggcgctggcgctgggaggaggaggacgacgacgacgtgccggatgagagcgaccatgaggtggcggctccgtcgtcttcgtaggaggaggaggagcaggtgatggatacggcggtggatgcggcggcgccggcgatcgccgccgccat
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| CDS seq | atggcggcggcgatcgccggcgccgccgcatccaccgccgtatccatcacctgctcctcctcctcctacgaagacgacggagccgccacctcatggtcgctctcatccggcacgtcgtcgtcgtcctcctcctcccagcgccagcgcccgtaccggcgcctcctccacgacgaggcgcagcgcctccgccgcgagcgccgggggcaagggagcggcgcgcacacgccccggtgggtccgccgcaccccggaccagatggcccgctacgtcgaggacgaccgcgccggccacgtgtacggccgccacgtggtcgccgccgtccgcgcggcgcgcgccacggcgtcctgctccagcccctcctccgccgacatgcgcgaggccatggcgtcgttcgtcgcgaagctcaccttccgcgagatgtgcttcgtgctccacgagctccgcggctggcgccaggcccgcgatttcttcgcctggatgaagcttcagctgtgctacgaaccgagcgttgtcgcctacacaatccttctcagattgtacggtcaggttgggaagatcaagctcgccgaggtgacatttcttgagatgcttcaggccgggtgcgagccagacgcagtggcatgtggaaccctcctgtgcgcgtacgcaagatgggggaagctcaatgacatgttgatgttctacgccgcggtgcgccgccgcgacattgtgccctccatctcggtcttcaatttcatggtctcatctctgcagaagcagaaattacatggcaaggtaatccacctgtgggagcagatgctggaagccaatgttgccccaaatcagttcacatatacagttgtgatcgggtcatatgccaaggaaggtatgttggaggaggccatggatgcatttggtgagatgaagcgccgcagatttgtgccggaggaggcgacatacagccttctgatcagcttgtgtgccaagcatggcaaaggggaagaggcattggggctttatgatgagatgaaggttaagagtattgtcccaagcaactacacatgtgcatctgtcctgacactctattacaagaatgaggattactcgaaggcgctttcgctgttctctgagatggagcagaataagattgttcctgatgaagttatctatggaattcttgttaggatatatggtaagcttgggctttatgaggacgcgcagcgtatgttcgaggagattgacaaggcaggtcttttgagcgatgagcaaacttatgtggcaatggctcaagttcatatgaatgtccaaaactatgatagagcattgcaagttttggatgctatgagggcgagaaatgtaaagccatcacaattctcctacagtgctcttctccgatgtcatgtggcaaaggaagatgtggatgctgctgaagatgctttcagagctctctccaattatggcccgcccgatgtgttttgctgtaatgatcttctcaggttatatatgaggcttggccatctagacaaggccagggcactcattctgaaaAtgaggaaggaagctctccagtttgatgaggatctatgtgtgactgtgttggaagtttgttgcaaaaccagtataaataaggatacggataatttaactgaagtgattcagaatgaaggtagctcatcaaaggtgctaaatccaacagatagttcaacacttagtatgatgttgaaatccttgttggacaaacctgagggcttgtccagtgtgtcccaattgatcatgaaatttgctagggaagggagtacagatgaggccaaattcctctatgaacaccttactgaattgggagccaagcctgatgatactgcaatagctactttaattgtacaatatggccaggcccagcagttggaacaagcacaaaaactgtttgagacagcatcaacatcgtttccagtaggaggatctgtctacaatgcaatggttgatgcattgtgcagatgtggcaaaactgaggaggcatatcgtcttttcatggaattgatcgatcaaggtcataatggagatgccgtgacaataagcatacttgtcacacacctgactaagcaagagaaatttcaggaggcagaaaaCatcatatatcgctgtttacacgatgaagctgagctcgacactgttgtatataatacttttatcaagtcaatgcttgaatcaggcaaactgtactcagctgtcagcatatatgatcgcatgatatcttctggcattcctcggtccatgcagacattcaatataatgataagtgtttatggccaaggaggaaagctggagaaggctgttgaaatgtttagtgctgcacaggaactaggcttaccgattgatgagaaaacatacacaaacatgcttagtttctatggaaaagcagggaagcatcatgaggcatccttactgttcagtagaatgaaggaagatggtatcaggcctggaaagatcagcttcaacaccatgatcaatgcctatgccacttcaggattgcacaatgaggcagagattatattccaagaaatgcagaaaaacaatcatgtgcctgattcgcacacatatcttgctttgatcagagcatacactgagggtaaatgctactccaaagctgaggaagccatccagatgatgctgagaagcaacatgaccccttcatgcactcatttcaaccatctcatttccgcctttctgaaggaaggtcagattgatgaagcccagaggatgtacaaccaaatggaggaggcaggcatacctgctgacttggcatgttgtcggacgatgatgaggatgcatctggatcacggttacgtcgatgatggcatcttgttcttcgaaacggcatgtcgacttctgaaaccggatagcttcatcctgagtgctgcatttcatctctatgaacattcaggcagggagtctgaagctggggatgtcctagatgccatcaatatgagtggtgcctctttcttgcgtaatctaaaggttggatcaaagttggagcaagtgagaaatgatacacatgcatct
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| Protein seq | MAAAIAGAAASTAVSITCSSSSYEDDGAATSWSLSSGTSSSSSSSQRQRPYRRLLHDEAQRLRRERRGQGSGAHTPRWVRRTPDQMARYVEDDRAGHVYGRHVVAAVRAARATASCSSPSSADMREAMASFVAKLTFREMCFVLHELRGWRQARDFFAWMKLQLCYEPSVVAYTILLRLYGQVGKIKLAEVTFLEMLQAGCEPDAVACGTLLCAYARWGKLNDMLMFYAAVRRRDIVPSISVFNFMVSSLQKQKLHGKVIHLWEQMLEANVAPNQFTYTVVIGSYAKEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHGKGEEALGLYDEMKVKSIVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEIDKAGLLSDEQTYVAMAQVHMNVQNYDRALQVLDAMRARNVKPSQFSYSALLRCHVAKEDVDAAEDAFRALSNYGPPDVFCCNDLLRLYMRLGHLDKARALILKMRKEALQFDEDLCVTVLEVCCKTSINKDTDNLTEVIQNEGSSSKVLNPTDSSTLSMMLKSLLDKPEGLSSVSQLIMKFAREGSTDEAKFLYEHLTELGAKPDDTAIATLIVQYGQAQQLEQAQKLFETASTSFPVGGSVYNAMVDALCRCGKTEEAYRLFMELIDQGHNGDAVTISILVTHLTKQEKFQEAENIIYRCLHDEAELDTVVYNTFIKSMLESGKLYSAVSIYDRMISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHTYLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDEAQRMYNQMEEAGIPADLACCRTMMRMHLDHGYVDDGILFFETACRLLKPDSFILSAAFHLYEHSGRESEAGDVLDAINMSGASFLRNLKVGSKLEQVRNDTHAS |
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| Function | Pentatricopeptide repeat-containing protein At5g27270 [UniProtKB/Swiss-Prot:O04647] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0000730 | OsNaBo_06g0000730.01 | Chr06 | 480673 | 484788 | - | NAM | ||
| CDS seq | atggcggcggcgatcgccggcgccgccgcatccaccgccgtatccatcacctgctcctcctcctcctacgaagacgacggagccgccacctcatggtcgctctcatccggcacgtcgtcgtcgtcctcctcctcccagcgccagcgcccgtaccggcgcctcctccacgacgaggcgcagcgcctccgccgcgagcgccgggggcaagggagcggcgcgcacacgccccggtgggtccgccgcaccccggaccagatggcccgctacgtcgaggacgaccgcgccggccacgtgtacggccgccacgtggtcgccgccgtccgcgcggcgcgcgccacggcgtcctgctccagcccctcctccgccgacatgcgcgaggccatggcgtcgttcgtcgcgaagctcaccttccgcgagatgtgcttcgtgctccacgagctccgcggctggcgccaggcccgcgatttcttcgcctggatgaagcttcagctgtgctacgaaccgagcgttgtcgcctacacaatccttctcagattgtacggtcaggttgggaagatcaagctcgccgaggtgacatttcttgagatgcttcaggccgggtgcgagccagacgcagtggcatgtggaaccctcctgtgcgcgtacgcaagatgggggaagctcaatgacatgttgatgttctacgccgcggtgcgccgccgcgacattgtgccctccatctcggtcttcaatttcatggtctcatctctgcagaagcagaaattacatggcaaggtaatccacctgtgggagcagatgctggaagccaatgttgccccaaatcagttcacatatacagttgtgatcgggtcatatgccaaggaaggtatgttggaggaggccatggatgcatttggtgagatgaagcgccgcagatttgtgccggaggaggcgacatacagccttctgatcagcttgtgtgccaagcatggcaaaggggaagaggcattggggctttatgatgagatgaaggttaagagtattgtcccaagcaactacacatgtgcatctgtcctgacactctattacaagaatgaggattactcgaaggcgctttcgctgttctctgagatggagcagaataagattgttcctgatgaagttatctatggaattcttgttaggatatatggtaagcttgggctttatgaggacgcgcagcgtatgttcgaggagattgacaaggcaggtcttttgagcgatgagcaaacttatgtggcaatggctcaagttcatatgaatgtccaaaactatgatagagcattgcaagttttggatgctatgagggcgagaaatgtaaagccatcacaattctcctacagtgctcttctccgatgtcatgtggcaaaggaagatgtggatgctgctgaagatgctttcagagctctctccaattatggcccgcccgatgtgttttgctgtaatgatcttctcaggttatatatgaggcttggccatctagacaaggccagggcactcattctgaaaAtgaggaaggaagctctccagtttgatgaggatctatgtgtgactgtgttggaagtttgttgcaaaaccagtataaataaggatacggataatttaactgaagtgattcagaatgaaggtagctcatcaaaggtgctaaatccaacagatagttcaacacttagtatgatgttgaaatccttgttggacaaacctgagggcttgtccagtgtgtcccaattgatcatgaaatttgctagggaagggagtacagatgaggccaaattcctctatgaacaccttactgaattgggagccaagcctgatgatactgcaatagctactttaattgtacaatatggccaggcccagcagttggaacaagcacaaaaactgtttgagacagcatcaacatcgtttccagtaggaggatctgtctacaatgcaatggttgatgcattgtgcagatgtggcaaaactgaggaggcatatcgtcttttcatggaattgatcgatcaaggtcataatggagatgccgtgacaataagcatacttgtcacacacctgactaagcaagagaaatttcaggaggcagaaaaCatcatatatcgctgtttacacgatgaagctgagctcgacactgttgtatataatacttttatcaagtcaatgcttgaatcaggcaaactgtactcagctgtcagcatatatgatcgcatgatatcttctggcattcctcggtccatgcagacattcaatataatgataagtgtttatggccaaggaggaaagctggagaaggctgttgaaatgtttagtgctgcacaggaactaggcttaccgattgatgagaaaacatacacaaacatgcttagtttctatggaaaagcagggaagcatcatgaggcatccttactgttcagtagaatgaaggaagatggtatcaggcctggaaagatcagcttcaacaccatgatcaatgcctatgccacttcaggattgcacaatgaggcagagattatattccaagaaatgcagaaaaacaatcatgtgcctgattcgcacacatatcttgctttgatcagagcatacactgagggtaaatgctactccaaagctgaggaagccatccagatgatgctgagaagcaacatgaccccttcatgcactcatttcaaccatctcatttccgcctttctgaaggaaggtcagattgatgaagcccagaggatgtacaaccaaatggaggaggcaggcatacctgctgacttggcatgttgtcggacgatgatgaggatgcatctggatcacggttacgtcgatgatggcatcttgttcttcgaaacggcatgtcgacttctgaaaccggatagcttcatcctgagtgctgcatttcatctctatgaacattcaggcagggagtctgaagctggggatgtcctagatgccatcaatatgagtggtgcctctttcttgcgtaatctaaaggttggatcaaagttggagcaagtgagaaatgatacacatgcatct
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| Protein seq | MAAAIAGAAASTAVSITCSSSSYEDDGAATSWSLSSGTSSSSSSSQRQRPYRRLLHDEAQRLRRERRGQGSGAHTPRWVRRTPDQMARYVEDDRAGHVYGRHVVAAVRAARATASCSSPSSADMREAMASFVAKLTFREMCFVLHELRGWRQARDFFAWMKLQLCYEPSVVAYTILLRLYGQVGKIKLAEVTFLEMLQAGCEPDAVACGTLLCAYARWGKLNDMLMFYAAVRRRDIVPSISVFNFMVSSLQKQKLHGKVIHLWEQMLEANVAPNQFTYTVVIGSYAKEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHGKGEEALGLYDEMKVKSIVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEIDKAGLLSDEQTYVAMAQVHMNVQNYDRALQVLDAMRARNVKPSQFSYSALLRCHVAKEDVDAAEDAFRALSNYGPPDVFCCNDLLRLYMRLGHLDKARALILKMRKEALQFDEDLCVTVLEVCCKTSINKDTDNLTEVIQNEGSSSKVLNPTDSSTLSMMLKSLLDKPEGLSSVSQLIMKFAREGSTDEAKFLYEHLTELGAKPDDTAIATLIVQYGQAQQLEQAQKLFETASTSFPVGGSVYNAMVDALCRCGKTEEAYRLFMELIDQGHNGDAVTISILVTHLTKQEKFQEAENIIYRCLHDEAELDTVVYNTFIKSMLESGKLYSAVSIYDRMISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHTYLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDEAQRMYNQMEEAGIPADLACCRTMMRMHLDHGYVDDGILFFETACRLLKPDSFILSAAFHLYEHSGRESEAGDVLDAINMSGASFLRNLKVGSKLEQVRNDTHAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.344338 | 2.382080 | 2.232367 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0111300 | RBH | 5.302005 | 5.247764 | 3.599862 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g02120 | RBH | 3.764498 | 3.534759 | 0.913481 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0111300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0000780 | RBH | 1.236693 | 0.787553 | 3.128562 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0000790 | RBH | 0.717502 | 0.317975 | 1.651383 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0000760 | RBH | 3.943543 | 0.000000 | 7.678485 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0000760 | RBH | 0.476967 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0000740 | RBH | 13.725899 | 1.036958 | 9.872738 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0009000 | RBH | 13.2809135 | 5.897582 | 8.065376 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0000710 | RBH | 0.877900 | 0.048327 | 0.642435 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0009700 | RBH | 12.461477 | 3.528317 | 9.599919 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0000740 | RBH | 0.323278 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0000740 | RBH | 0.658569 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0000760 | RBH | 11.591233 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0000740 | RBH | 2.480528 | 0.138255 | 1.164283 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0000700 | RBH | 0.777170 | 0.913484 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G000730 | RBH | 0.818847 | 0.0 | 1.376953 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0000790 | SBH | 0.721383 | 0.000000 | 0.459851 |
