Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0000790 | OGI:06001570 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:527173-530418 | ||||||||
| Gene Symbol | PPR16, OsPPR16 | ||||||||||
| DNA seq | atggtgtgctccgtggctgccaccgcctcgctcctcccctctcctcctcccaaacccaccgccctcgccgccgacgaccaccacgcccgcctcagggcggcggccgcgcgctccgacctgccggccgcgctggccgccttcgtcgccatgtcctccgccggggcgccacccgtcctccgcaccttcacctccctcctcaagctctgcgccgcccgcggcgacctcgccaccggccgcgccgtccacgcgcagctcgccgcccgggggctagactccgaggccctcgccgccaccgcgctggccaacatgtacgccaagtgccgccgccccgccgacgcacgcagggtgttcgaccgaatgcctgtccgggaccgcgtcgcgtggaacgcgctcgtggccggctacgcgcggaacggcctcgcccggatggctatggagatggtcgtcaggatgcaggaggaggaaggggagcggcctgactcgatcacgctcgtgtccgtgcttccggcctgcgcgaacgccagggcgcttgctgcctgccgagaggcgcacgcgttcgcgatccgttctgggctggaagagcttgttaatgtcgctacggccatccttgacgcctactgcaagtgtggggacatccgggcagcaagggtggtcttcgactggatgccaaccaagaactccgtgtcctggaatgccatgatcgatggatatgcacagaatggggattcaagggaggctctggctcttttcaataggatggtcgaggagggtgtcgatgtgacggatgtctctgtcctggcagcactgcaagcgtgtggggagcttggctgtcttgatgaagggacgcgtgtccatgaactgcttgtgcggattggcttagactccaacgtgtcagtgatgaatgcactcatcaccatgtattccAaatgcaagagagttgacctggcatctcatgtgtttgatgagttggacagaaggacgcaggtatcgtggaatgccatgatccttggatgcgcgcagaatggatgctccgaggatgcggtgaggctttttactaggatgcagttggagaatgtgaaacctgattcattcactcttgtcagtgttattccagctcttgcggatatttcagatcctctgcaggcaagatggatccatggatattctatcaggttacacctagatcaggatgtatatgttctgaccgcccttattgatatgtatgcaaaatgtggccgtgttaacatagctagaattctgttcaattctgcaagggagaggcatgttatcacatggaacgctatgatccatggttatGgatcacatggttttggcaaagctgcagttgagctatttgaagagatgaagagcattggcatagtgcctaatgagacaacattcctttcagtcctctctgcatgcagtcatgctggtttggttgatgaaggacgggaatattttaccagcatgaaggaggactatgggcttgaacctgggatggagcactatggtaccatggtggatcttcttggccgagccgggaagctagatgaagcatgggctttcattcaaaagatgcctatggaccctggccttagtgtttacggtgcgatgttaggtgcttgcaagttgcacaagaatgtggagttggcagaagaatcggctcagaagatttttgagctagggccacaggagggagtgtatcatgtcctcttggcaaacatttatgcaaacgcttccatgtggaaggatgttgcaagggtgagaactgctatggagaagaatggcctccaaaaaactcctggatggagtatcattcaactcaagaatgagatccataccttctactctggaagcacAaatcaccagcaagcaaaggagatatattcaaggttggctaagttgatagaagagatcaaagcagtgggctatgtgccagacactgattcaatacatgatgtGgaagatgatgtcaaagcacagctgctcaacacccacagcgagaagcttgccattgcttttgggctcattcgcacagcccctggcacaacAatccagataaagaagaacctccgagtttgtaatgactgccataatgcaaccaagctaatatctttagtgacaggacgggaaataatcatgagagatattcagcgattccaccattttaaggatggcaaatgctcatgtggagactactggtagtgaagtgttgagacagtttgaatctgcacccggagatgagggagcttcagaaagatcagagtatcagatctgacaattaggtgaaactaattggcaaagttcttaaggtaattgcttagttttatacgtGgtacatgctatgcgataataggattctacatatatggttttctattgccaacgcccttgccaatgagttttaccttgttttattgtagggctgtgcagctgcctcttatatcaacactaaatggctaaacttgtgaagtatctgaaaattgttatggccacttcaccttttcaggaaacatactgcaaattccagtcagtcattgtaaaattgaaatgcttctatttacattaagatactagtgcatagggaacctgttcttcatagcaaccatgactttctcatgtcttatctttggcctgagattagattcacatgttcggtcgaactgtcaataactgaaagttatcattttcttcttaccttttgatcatggattAaaaaaccgtactgatgtaatttgtttttttcgtaaaaagcaacatcatctgctattccatttgcaataaaatgatcgcacatgaatgcttacaagtttcaacaaaataattcaacactaatatcctttatgggagaggacatgcacttgaagctcaggaaagcatcttattctgaatgcagctactgctgtaaaatgttattccagggcattattggatcagcatggatgtgatctttttccttcagttattagcacttcctgctgacattgttgacttctgtttcccgactgtagcaataaactccactgccactttgagtgcattaatagatgccaggttcatcaggcttgttgacgaccatgttggctcccctccagccaaatcagaaactccccGgaatacaatcacaggtatgccaggagatgttgttgtctgttgaaattagtatatgttctgttaattatataaatctatcttaaccttcatgattgcatgaaaaatgatgtgtaaatattggcagatatttaa
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| CDS seq | atggtgtgctccgtggctgccaccgcctcgctcctcccctctcctcctcccaaacccaccgccctcgccgccgacgaccaccacgcccgcctcagggcggcggccgcgcgctccgacctgccggccgcgctggccgccttcgtcgccatgtcctccgccggggcgccacccgtcctccgcaccttcacctccctcctcaagctctgcgccgcccgcggcgacctcgccaccggccgcgccgtccacgcgcagctcgccgcccgggggctagactccgaggccctcgccgccaccgcgctggccaacatgtacgccaagtgccgccgccccgccgacgcacgcagggtgttcgaccgaatgcctgtccgggaccgcgtcgcgtggaacgcgctcgtggccggctacgcgcggaacggcctcgcccggatggctatggagatggtcgtcaggatgcaggaggaggaaggggagcggcctgactcgatcacgctcgtgtccgtgcttccggcctgcgcgaacgccagggcgcttgctgcctgccgagaggcgcacgcgttcgcgatccgttctgggctggaagagcttgttaatgtcgctacggccatccttgacgcctactgcaagtgtggggacatccgggcagcaagggtggtcttcgactggatgccaaccaagaactccgtgtcctggaatgccatgatcgatggatatgcacagaatggggattcaagggaggctctggctcttttcaataggatggtcgaggagggtgtcgatgtgacggatgtctctgtcctggcagcactgcaagcgtgtggggagcttggctgtcttgatgaagggacgcgtgtccatgaactgcttgtgcggattggcttagactccaacgtgtcagtgatgaatgcactcatcaccatgtattccAaatgcaagagagttgacctggcatctcatgtgtttgatgagttggacagaaggacgcaggtatcgtggaatgccatgatccttggatgcgcgcagaatggatgctccgaggatgcggtgaggctttttactaggatgcagttggagaatgtgaaacctgattcattcactcttgtcagtgttattccagctcttgcggatatttcagatcctctgcaggcaagatggatccatggatattctatcaggttacacctagatcaggatgtatatgttctgaccgcccttattgatatgtatgcaaaatgtggccgtgttaacatagctagaattctgttcaattctgcaagggagaggcatgttatcacatggaacgctatgatccatggttatGgatcacatggttttggcaaagctgcagttgagctatttgaagagatgaagagcattggcatagtgcctaatgagacaacattcctttcagtcctctctgcatgcagtcatgctgggcattattggatcagcatggatgtgatctttttccttcagttattagcacttcctgctgacattgttgacttctgtttcccgactgtagcaataaactccactgccactttgagtgcattaatagatgccaggttcatcaggcttgttgacgaccatgttggctcccctccagccaaatcagaaactccccGgaatacaatcacagatatttaa
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| Protein seq | MVCSVAATASLLPSPPPKPTALAADDHHARLRAAAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGLDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGTRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGHYWISMDVIFFLQLLALPADIVDFCFPTVAINSTATLSALIDARFIRLVDDHVGSPPAKSETPRNTITDI |
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| Function | Pentatricopeptide repeat-containing protein At1g11290, chloroplastic [UniProtKB/Swiss-Prot:Q3E6Q1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0000790 | OsNaBo_06g0000790.01 | Chr06 | 527173 | 530418 | + | NAM | ||
| CDS seq | atggtgtgctccgtggctgccaccgcctcgctcctcccctctcctcctcccaaacccaccgccctcgccgccgacgaccaccacgcccgcctcagggcggcggccgcgcgctccgacctgccggccgcgctggccgccttcgtcgccatgtcctccgccggggcgccacccgtcctccgcaccttcacctccctcctcaagctctgcgccgcccgcggcgacctcgccaccggccgcgccgtccacgcgcagctcgccgcccgggggctagactccgaggccctcgccgccaccgcgctggccaacatgtacgccaagtgccgccgccccgccgacgcacgcagggtgttcgaccgaatgcctgtccgggaccgcgtcgcgtggaacgcgctcgtggccggctacgcgcggaacggcctcgcccggatggctatggagatggtcgtcaggatgcaggaggaggaaggggagcggcctgactcgatcacgctcgtgtccgtgcttccggcctgcgcgaacgccagggcgcttgctgcctgccgagaggcgcacgcgttcgcgatccgttctgggctggaagagcttgttaatgtcgctacggccatccttgacgcctactgcaagtgtggggacatccgggcagcaagggtggtcttcgactggatgccaaccaagaactccgtgtcctggaatgccatgatcgatggatatgcacagaatggggattcaagggaggctctggctcttttcaataggatggtcgaggagggtgtcgatgtgacggatgtctctgtcctggcagcactgcaagcgtgtggggagcttggctgtcttgatgaagggacgcgtgtccatgaactgcttgtgcggattggcttagactccaacgtgtcagtgatgaatgcactcatcaccatgtattccAaatgcaagagagttgacctggcatctcatgtgtttgatgagttggacagaaggacgcaggtatcgtggaatgccatgatccttggatgcgcgcagaatggatgctccgaggatgcggtgaggctttttactaggatgcagttggagaatgtgaaacctgattcattcactcttgtcagtgttattccagctcttgcggatatttcagatcctctgcaggcaagatggatccatggatattctatcaggttacacctagatcaggatgtatatgttctgaccgcccttattgatatgtatgcaaaatgtggccgtgttaacatagctagaattctgttcaattctgcaagggagaggcatgttatcacatggaacgctatgatccatggttatGgatcacatggttttggcaaagctgcagttgagctatttgaagagatgaagagcattggcatagtgcctaatgagacaacattcctttcagtcctctctgcatgcagtcatgctgggcattattggatcagcatggatgtgatctttttccttcagttattagcacttcctgctgacattgttgacttctgtttcccgactgtagcaataaactccactgccactttgagtgcattaatagatgccaggttcatcaggcttgttgacgaccatgttggctcccctccagccaaatcagaaactccccGgaatacaatcacagatatttaa
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| Protein seq | MVCSVAATASLLPSPPPKPTALAADDHHARLRAAAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGLDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGTRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGHYWISMDVIFFLQLLALPADIVDFCFPTVAINSTATLSALIDARFIRLVDDHVGSPPAKSETPRNTITDI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.721383 | 0.000000 | 0.459851 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0112000 | RBH | 0.504270 | 1.059073 | 0.451717 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g02200 | RBH | 0.341014 | 0.712315 | 0.116281 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0112000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0000850 | RBH | 0.118959 | 0.000000 | 0.479734 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0000850 | RBH | 0.050717 | 0.000000 | 0.376610 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0000820 | RBH | 0.919665 | 0.802134 | 2.396447 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0000820 | RBH | 0.057234 | 0.047341 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0000800 | RBH | 1.030530 | 0.0 | 0.753837 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0009600 | RBH | 1.51876 | 2.14066 | 0.812014 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0000770 | RBH | 0.091638 | 0.106932 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0010300 | RBH | 1.199973 | 1.3865835 | 3.211811 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0000800 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0000800 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0000820 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0000800 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0000760 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G000790 | RBH | 0.448431 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0000980 | SBH | 0.0 | 0.0 | 0.531244 |
