Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0028060 | OGI:05078220 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:29814513-29817214 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gctcaaaatgcaacacgggagaataaaaatggaataagttgaaatgcaatttacaataagccaacaataaacccattcattcaaaataaacaaaatagaccacccctactttctagtacatcccagcgagatgactctcatccataacagaagccttgtaataatgtcaatatattgcacgtatcactcacctcagcatataaaacaaataaaatattccaggctccatatttgatcggtatggagtacaagggatacagtcttaacttgttcagtgcagtctaaagcacaattaggggaacacaaactaccccacctcatggttcctggaagttcccactttcatctttggaattatcaccatggcagccattgctgagacgagactgactacgacgctgaccatcatagtaaatgttggaacaccatatagcggcattaacagcgatgacaaaccttatattcctcatgcctcttctgaaagcatcttccgacctgcaccacacaaaacatagtaactcagtacagaattcaaattgatttggatatagatgcattaacatattatttgactgtctatctagttcattcagaaggcaaaatagtgccataattcatattccacactagtctgggcatgtttggcagatccttgttcagcggagctggagccgaaccaaacactactatgatggatctgctccacaatacacataggaagggtggagctaccttttcccacctccacaactccagctccaaatttggagccctaccaaacataccctaagaggatcaagtgaaaacaatagatacaaaccactgaaaacaggacgtaaaagatctctacattcgtgaaaaaaattgagtgtaaaatattagtggtaggtataggcatggtctatatctccacaaaatttcaagaccaaattcaaatttgcttgcaagatacaagaaatacaaactttgcacggatagtgatagggaagtttcatgcaaattttgtcttcttttaactttccaaacgaagttgagtttggtcttagaaatttggtgagaaagagatcatgcctatccctacctttaataatttcttcgtgaacatagagaaatcgagttttcataggttcaattgaactggagatttctccagaaaacgagaaactatacatgcagatgctcatgtcgcataactaagttaatcagtccatttttctacagcggaactatttcaccaaaagaagtgatagcttgttttaatccctaaaaacaactgccatttttgcttcctgtcgtacaagctgtgttctaagttgaaaatttatgggatgatagatgggatcagaacctatgttacaaaaattcccatagctaaagttcaggggagcaaagcttacctttttcctgtaaacaggttctttgattcgattatgtttaatttgatcgacctagattactagtatttgctttccaacaatcatgtactatgggaaggagccaactgatgaactaaaattttcttagcgttgctcacatattaacaaacaaacaataaaatcatcatctggcctgtaactccttaacagccgtccctgtaaccagatctaacggtacaatgacaatatgctctcaaatgaccccataaataaagaaaagaccaaataagctgaaatttagtttatctatagtactccctccgtttcaggttataagacgttttgactttggtcaaagtcaaactgtttcaagtttgacagacaaatatagtaatatttataatactaataatagtttcatcaaatcaataattgaatatactttcataataaatttgtcttgggttgaaaatgatactatttttttctacaaacttgaacaaacttaaagcactttgactttgaccaaagtcaaaacgtcttataacctgaaacggagggagtagaacaagactcgggctaagccaacaataaacacatcaattaaagtaacaggaagtaaaatgatacaggctagtactcagacttacgctttaatgtctgctgctacataatcagggtaattggtttcacccagagaaggcaggtggtagggttttgtataagagaagaaagtccggctggcaaaaggaaccacaccaattgttgggtggtttaatttggtggctgcgtgagggctttgaatagaattcagtcactttgcttgctgcattggaaggcagtataaggaaattaatatttttttcaccaaaggcatacaagttcactcttatattgtggaaaaatcaaagttatcagaaattgcatagatgtgagaaaggaaacaaaagaaaaggcaccgccttgttcatgTtttttttttaaaaaaaaagaaaaaaaggaaaggaaaggaattataaattggccggtttgaaagtgtaaaactagtgctaggcaaagaaattgagtaatagctacttacagagacaggaaggccatggtaattgggaagcaccgtgctaaaacgacggagagcatcgtggatagcagaaacgtctcctccttgctgaaaggaggaaaagagcaattatgttcttccctgttgtgaaagaaaaataaaaaatttgaaagatttggaggagcgtgtatacatacagcggaggtaggacgattaggcatcgatccggacagcactgaaaatttctgaaacaagaaacgcctagacat
More
|
||||||||||
| CDS seq | atgtctaggcgtttcttgtttcagaaattttcagtgctgtccggatcgatgcctaatcgtcctacctccgctgtatgtatacacgctcctccaaatctttcaaattttttatttttctttcacaacagggaagaacataattgctcttttcctcctttcagcaaggaggagacgtttctgctatccacgatgctctccgtcgttttagcacggtgcttcccaattaccatggccttcctgtctctgtcggaagatgctttcagaagaggcatgaggaatataaggtttgtcatcgctgttaatgccgctatatggtgttccaacatttactatgatggtcagcgtcgtagtcagtctcgtctcagcaatggctgccatggtgataattccaaagatgaaagtgggaacttccaggaaccatga
More
|
||||||||||
| Protein seq | MSRRFLFQKFSVLSGSMPNRPTSAVCIHAPPNLSNFLFFFHNREEHNCSFPPFSKEETFLLSTMLSVVLARCFPITMAFLSLSEDAFRRGMRNIRFVIAVNAAIWCSNIYYDGQRRSQSRLSNGCHGDNSKDESGNFQEP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0028060 | OsNaBo_05g0028060.01 | Chr05 | 29814513 | 29817214 | - | NAM | ||
| CDS seq | atgtctaggcgtttcttgtttcagaaattttcagtgctgtccggatcgatgcctaatcgtcctacctccgctgtatgtatacacgctcctccaaatctttcaaattttttatttttctttcacaacagggaagaacataattgctcttttcctcctttcagcaaggaggagacgtttctgctatccacgatgctctccgtcgttttagcacggtgcttcccaattaccatggccttcctgtctctgtcggaagatgctttcagaagaggcatgaggaatataaggtttgtcatcgctgttaatgccgctatatggtgttccaacatttactatgatggtcagcgtcgtagtcagtctcgtctcagcaatggctgccatggtgataattccaaagatgaaagtgggaacttccaggaaccatga
More
|
|||||||
| Protein seq | MSRRFLFQKFSVLSGSMPNRPTSAVCIHAPPNLSNFLFFFHNREEHNCSFPPFSKEETFLLSTMLSVVLARCFPITMAFLSLSEDAFRRGMRNIRFVIAVNAAIWCSNIYYDGQRRSQSRLSNGCHGDNSKDESGNFQEP |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.568904 | 12.673533 | 7.948192 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0580900 | SBH | 4.900914 | 4.020111 | 6.938580 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50420 | SBH | 1.493374 | 2.472247 | 0.736638 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0580900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028340 | RBH | 2.281578 | 0.000000 | 15.337803 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028140 | SBH | 1.104780 | 7.233523 | 9.263485 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028150 | SBH | 3.947646 | 12.840178 | 28.584988 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028190 | SBH | 0.847750 | 0.367431 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028080 | SBH | 19.717449 | 18.786982 | 37.787132 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0451800 | RBH | 3.8443295 | 3.0476865 | 12.9069335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027790 | RBH | 0.455463 | 0.788064 | 3.660730 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0465300 | SBH | 6.2086505 | 36.5785065 | 24.0398445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0027910 | RBH | 0.384046 | 0.129633 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027800 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028030 | RBH | 7.793897 | 8.257509 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028050 | RBH | 1.252644 | 0.645209 | 2.644298 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028080 | RBH | 0.397287 | 3.850901 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
