Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0028150 | OGI:05078220 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:29340408-29347103 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cacctttaacatgcttactcattccactaatatatctaagggtcatcaattaacagctatccaatgtaattaactcctacttgcatttcaggagatgcactgttcctgcttttcagttctcttttcctatagctcgtcaatagttacttctattttgcctgtcctatcactttggttttcatggtaggatgaacataatggatgtattacagacaaaaagaagaatcatctgtaaactatactgtgtcccagtaaataatgctacttccttattgtttaccttcatatttagctccttcccttcacttaacattggtagagttttaggctttgcttagcaaggcaaacctgcagtgtgaaagggaaagcagtgaggtctatccttatatcatgcttatatcatgcttactatgctttgtaactttgcttcctgaactgtgtgctcccagaaacatggtgctattaacataaaaaatacactgatcaatgtactgatgaatttcgctgcagttaaaactagcaatagtagagcattagtttacatgttgtgcttttgtgctgaagaggaaaagttattttgtagatagttccaagattgcatttttctgctatttaaatcacaacggagttgccaatgataattttttttcccaatggtgtgacattatctattggttcatttttctgataactgacatttctatagggcattgctttgaagttttttaagctatcatgtttgccagtcccaattttcacatttaatcctgtagtactggtaaatttttaggtcaggaattgatagttcatacatattagcgtattgttacctgggtaaattttgcttgccagttgaaaaattacatccatgggattgtcttgtttcactcgagattttttcttactttcatttttcttacaattttagtaagctgctactatgcttgatttaagtaagatgttactaaggtataagtcatggttagtctttcacatggaaaattcatgagcagcggcattagatgcaggtagcgaatggtatgatggaaagaagaggatccaaggatggtggcagatctggagccaaggtcgatggggatggccagggcatcgcggcggcggaccccggcagaacgacaagaggtagaggaagtgggcggccaatctaggaggcacaccacccgggtttgttcttggcacctttcaatgttctacttaatacacttagcgcacataatttacagattgaaaagaagcatgtttttcttactgtaattctacatctatttgttcatcatatgatttgtctactcactaaaaagcatattaatgttatgtgtgttgtttaagtgatcattttttatttccatttatctaggtcatatattgttctgctccacatctccctgttaagcagagtgcccatcagcggtcacaagttttgctggttaattgcgatgcctggttggtttagctgctggtgttgcccaggtttccaagtccagcagctgccatcatccaaaggcactggcttggtctttgctatgctcctcctccttcatcaggttgacacatatgctggaattatttttcgtgcgtttgttcaatatatgttgatgttacttctgggaaggcatcaactgatatattagtgatcacctactactgtatgtcatcgacctcctctatgcgaaaacaatccccaaactcgagaatcgcatgcttctaataacagcagaaacatatatgtattgcccttagtgcaatagttaagttcagtagatatatcctatctgatgatttctccataacttctatttttttttctttccatattttgcctggtcatgtactcatgtactgctaaataagtttactgtatacaagtttaatgcatttcgcaatcatatgtctcctttgaaaaactccgaattatagaagaggaaaaaaagggatctggttgcaccttacagtcttatgtctgtaatgttcaagtatttccagaatttatgagtaaggcattagtagtggccacccttcatgaagcaaagtaaaatagttaggttctctatcagttgaagttgtctgtagtcccaataaatctgacaatggtctcacctttattctaaacttcattctgagttatagaaatgtggcatttaaagatccatgtttttctacaatgcttaatttctttttaatcgtatttaagtgatatttaaataactcatattggattatgcagctctcatattaatacaatcttggaactgtttatgatatataatgcatcagtgttttgcaacctcgattctttgataagatggtggttatcaatgtttgtggtttgctctatgcatttcctctgcaaatatttatagttagatgttttactctatatgttaattgactgtgtaccacttttctcaggttcaatgaaaccatataatagtacgattggaccagatgaaacaagggaaagtaaaattgggcataacattctgttacattagaaaagggattcaatggtgcctgctcgttgcaatggatctaaactaaatatagttgaagttgtaaactagaaagaaaaggtatccctaaacctaaatagacacatgcatatacagataagtagctaacaaaatgatttaatcatttacaatattattcatcatagactactaccatcaccaccactactttctatatatcagtaagatgggggccctctgtagattgattagtcgttgagatattcatgcttttctcactttcagtttgagatatcctaatattaattattgcatgaatggcacaatagctcctctatagctttgcttccacttataatttactgttatcttgtatggctacaacttcagctgtgaggatagatgggtagcaggattgaatgacattacttaaatggtaaaaatcatattttctggttgatgtgttgaatgtgattttgcatgatatatattactagctgagtaaattttgcccacttctaattagctgctagctcataaataaacatcaatggaattttggtgttccattatcactggttgacctattaacagtttttccgtgctcgggcacttagtgcggtaaggttttattagggtatggtatttatctgcatgtgcttctcaatatatgatttcattggctaacgtatgctttcatgtacttatttacattccaacatgtttggattcttcagaatatgatgggatgctgaatgtaatcttgaaaagttgggcccattattcttcagttgtcctatttgcaaaaacccaaagtgtatagcaatgtgtaccagggattatttttctattaattttgggttattatgtaatgaaaatattgtatattcatgtgaaccatgagtctctaatgaaccgaaatttcaacagagatgctctacgttgataataaagtgtccatctgtagtaagatatttaccacggacgaagcaatactaattacgatgctattgatatccacaactgttgaactgtaatctatgatgtcacttatcaaattatcgtagatttccctcatcgtagattttaatccgtgcaggcggcgcgcaatggcgcgccccagcctctagtaactacttaaggctcaagacagcaaagagacgtttgaacttggctgtgattattccagccgttgtttcaggctacttcgttgccgaaatgattgcgtcgaattgacgaagatgaggtttagaagcaccggcgatcgatatgagaaacatgcaaccaacctttatgattatgtattgggtaccttaagttatccttggtaatgtgtgggcggctgttgtttataattaagcaccttaagttatccaactctaatgtagctagcttctgttgaaccaaaggctaaatttttatctatttatatcttgaaaaaaaaaagtatgttcgcgaacggtgttaataacgtgcagagaggcagagacaccatcagtaactgtaagctgatacggggaatttaactatttgtcacttttaggtttgacaattatcaaaatacgaaaatacccttcttatgttttttttttttgccctttcttaagagatggtcttaactatttgccacttttgccctcatggcaaactcgggtggaaaaggtgtgggacccactcgtcagcctcttactccccttcacctctctccctgatgcgattttatgcttctgattgtgatgatgtaaagttcaatattttatactctccctgtcccatagcaacctaggattggcgaatctgaacaagtctcatgtccaacaaattttgtgatattatgggacggagaaaatagaagggaaatgacccaatttagaaaaaacaatagagcaaccataacgacataatatgctcaaaatgcaacacgggagaataaaaatggaataagttgaaatgcaatttacaataagccaacaataaacccattcattcaaaataaacaaaatagaccacccctactttctagtacatcccagcgagatgactctcatccataaatattagtggtaggtataggcatggtctatatctccacaaaatttcaagaccaaattcaaatttgcttgcaagatacaagaaatacaaactttgcacggatagtgatagggaagtttcatgcaaaatttgtcttattttaactttccaaacgaagttgagtttggtcttagaaatttggtgagaaagagatcatgcctatccctacctttaataatttcttcgtgaacatagagaaatcgagttttcataggttcaattgaactggagatttctccagaaaacgagaaactatacatgcagatgctcatgtcgcataactaagttaatcagtccatttttctacagcggaactatttcaccaaaagaagtgatagcttgttttaatccctaaaaacaactgccatttttgcttcctgtcgtacaagctgtgttctaagttgaaaatttatgggatgatagatgggatcagaacctatgttacaaaaattcccatagctaaagttcaggggagcaaagcttacctttttcctgtaaacaggttctttgattcgattatgtttaatttgatcgacctagattactagtatttgctttccaacaatcacgtactatgggaaggagccaactgatgaactaaaattttcttagcgttgctcacatattaacaaacaaacaataaaatcatcatctggcctgtaactccttaacagccgtccctgtaaccagatctaacggtacaatgacaatatgctctcaaatgaccccataaataaagaaaagaccaaataagctgaaatttagtttatctatagtactccctccgtttcaggttataagacgttttgactttggtcaaagtcaaactgtttcaagtttgacagacaaatatagtaatatttataatactaataatagtttcatcaaatcaataattgaatatactttcataataaatttgtcttaggttgaaaatgatactatttttttctacaaacttgaacaaacttaaagcactttgactttgaccaaagtcaaaacgtcttataacctgaaacggagggagtagaacaagactcgggctaagccaacaataaacacatcaattaaagtaacaggaagtaaaatgatacaggctagtactcagacttacgctttaatgtctgctgctacataatcagggtaattggtttcacccagagaaggcaggtggtagggttttgtataagagaagaaagtccggctggcaaaaggaaccacaccaattgttgggtggtttaatttggtggctgcgtgagggctttgaatagaattcaggcactttgcttgctgcattggaaggcagtataaggaaattaatatttttttcaccaaaggcatacaagttcactcttatattgtggaaaaatcaaaattatcagaaattgcatagatgtgagaaaggaaacaaaagaaaaggcaccgccttgttcatgtttttttttaaaaaaaagaaaaaaaggaaaggaaaggaattataaattggccggtttgaaagtgtaaaactagtgctaggcaaagaaattgagtaatagctacttacagagacaggaaggccatggtaattgggaagcaccgtgctaaaacgacggagagcatcgtggatagcagaaacgtctcctccttgctgaaaggaggaaaagagcaattatgttcttccctgttgtgaaagaaaaataaaaaatttgaaagatttggaggagcgtgtatacatacagcggaggtaggacgattaggcatcgatccggacagcactgaaaatttctgaaacaagaaacgcctagacatgtcggcgatctgatccgtgcgtctctctgcttggaatttccggcgagcgcttgctgcttataagaaaaaaaaaggggctaaaaccaaaaacaaaacgaaatcagtccgagatgtgatcgaagcaggtcaggtgaggtgcaggcccccatgagattgagcagcaaggaatccaaatcgaatctcaacagggaacttaaagacacggaaagaaagaaagctgaccttagcaggtgcagggggggaggatggcgcccggcggcggcgaggactgagcacgggcctccaaaccctagcacatcgcgattggggatcgaacccaaccttt
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| CDS seq | atgtctaggcgtttcttgtttcagaaattttcagtgctgtccggatcgatgcctaatcgtcctacctccgctcaaggaggagacgtttctgctatccacgatgctctccgtcgttttagcacggtgcttcccaattaccatggccttcctgtctctcaagcaaagtgcctgaattctattcaaagccctcacgcagccaccaaattaaaccacccaacaattggtgtggttccttttgccagccggactttcttctcttatacaaaaccctaccacctgccttctctgggtgaaaccaattaccctgattatgtagcagcagacattaaagcgtttgccttgctaagcaaagcctaa |
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| Protein seq | MSRRFLFQKFSVLSGSMPNRPTSAQGGDVSAIHDALRRFSTVLPNYHGLPVSQAKCLNSIQSPHAATKLNHPTIGVVPFASRTFFSYTKPYHLPSLGETNYPDYVAADIKAFALLSKA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0028150 | OsCMeo_05g0028150.01 | Chr05 | 29340408 | 29347103 | - | NAM | ||
| CDS seq | atgtctaggcgtttcttgtttcagaaattttcagtgctgtccggatcgatgcctaatcgtcctacctccgctcaaggaggagacgtttctgctatccacgatgctctccgtcgttttagcacggtgcttcccaattaccatggccttcctgtctctcaagcaaagtgcctgaattctattcaaagccctcacgcagccaccaaattaaaccacccaacaattggtgtggttccttttgccagccggactttcttctcttatacaaaaccctaccacctgccttctctgggtgaaaccaattaccctgattatgtagcagcagacattaaagcgtttgccttgctaagcaaagcctaa
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| Protein seq | MSRRFLFQKFSVLSGSMPNRPTSAQGGDVSAIHDALRRFSTVLPNYHGLPVSQAKCLNSIQSPHAATKLNHPTIGVVPFASRTFFSYTKPYHLPSLGETNYPDYVAADIKAFALLSKA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0028150 | OsCMeo_05g0028150.02 | Chr05 | 29346080 | 29347103 | - | NAM | ||
| CDS seq | atgtctaggcgtttcttgtttcagaaattttcagtgctgtccggatcgatgcctaatcgtcctacctccgctcaaggaggagacgtttctgctatccacgatgctctccgtcgttttagcacggtgcttcccaattaccatggccttcctgtctctcaagcaaagtgcctgaattctattcaaagccctcacgcagccaccaaattaaaccacccaacaattggtgtggttccttttgccagccggactttcttctcttatacaaaaccctaccacctgccttctctgggtgaaaccaattaccctgattatgtagcagcagacattaaagcgtaa
More
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| Protein seq | MSRRFLFQKFSVLSGSMPNRPTSAQGGDVSAIHDALRRFSTVLPNYHGLPVSQAKCLNSIQSPHAATKLNHPTIGVVPFASRTFFSYTKPYHLPSLGETNYPDYVAADIKA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.947646 | 12.840178 | 28.584988 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0580900 | RBH | 4.900914 | 4.020111 | 6.938580 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50420 | RBH | 1.493374 | 2.472247 | 0.736638 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0580900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028650 | SBH | 0.0 | 0.0 | 1.101125 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028140 | RBH | 1.104780 | 7.233523 | 9.263485 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028440 | RBH | 0.0 | 0.0 | 4.206802 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028190 | RBH | 0.847750 | 0.367431 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028080 | RBH | 19.717449 | 18.786982 | 37.787132 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0451800 | RBH | 3.8443295 | 3.0476865 | 12.9069335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027790 | RBH | 0.455463 | 0.788064 | 3.660730 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0465300 | RBH | 6.2086505 | 36.5785065 | 24.0398445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028240 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0028130 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028380 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028370 | SBH | 0.256364 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028420 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027930 | SBH | 0.000000 | 0.0 | 0.223956 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028450 | SBH | 0.0 | 0.0 | 0.481457 |
