Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0028240 | OGI:05078220 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:30226368-30228132 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gatccccaaccgcgatgtgctagggtttggaggcccggtgttcaatCccatcttccctccgtgcagccgctaggatcagttttatcttctttctttctttctttccgtgtcattgttattagattagattctaagttccctgttgagattccttgctgctcatgggggcctgccgaaaactacctcacctgattacgttttgtttttggttttagCcccttaTtttttttatatgcagatagcgctcgccggaaattccaagcagtatatagaattatagatcgccgacatgtgtaggcgtttcttgtttcaggaattctcgtccgtgctgtccagatcgatgcctaatcgtcctacctccgctgtatgtataaacactcatccaaatctttcaaatttctggtttttctttcacagcagggaagagcataattgctcttttcctcctctcaggaaggaggaggcgtttctgctatcaacaatgtttttaatggagctctccgtcgttttagcacggtgattcccaataaccatggccttcctttttctgtaagtagctaatagtactcaatttctttgctagcactagttttacactttcaaaccggccaatttataattccttttcTttttaaaaaaaagaacaaggcggtgccttttcttttgtttcctttctcacatctatgcaattttcgataactttgatttttccacaatataagagtgaacttgtatgcctttgttgaaaaaaaatatattaatttccttgtactgccttccaatgcagcaagcaaagtgcctgaattctattcaaagccctaacgcagctaccaaagcaaaccacccaacaattggtgtggttccttttgccagccggactttcttctcttatacaaaaccctaccacctgccttctctgggtgaaaccaattacctggattatgcagcagcagactttaaagcgtaagtctgagtactagcctgtatcagtttacttcCTgttacttgaattgatgtttattgttggcttagcccgaatcttgttctgctatagataaactaaatttcagcttattatttggtcTtttctttatttgcgggatgcatttgagagcatatattgtcattgtagttcccgttagatctggttacagggacggctgttaaggagttacaggccagatgatgattgtatttttttgtttgttaatatatgagcaactctaataaaattttagttcattagttggatccttcccatagtacatgattgtaggaaagcaaatactagtaatctaggtcgatcaaattaaacataatcgaatgaaagaacctgtttacaggaaaaaggtaaactttgctcccctgaactttagctatgggaatttttgcaacataggttctgatcccgtctatcatcccataaactttcaacttagaacacagcttgtacgacaggaagcaaaaatgccagttgtttttagggattaaaacaagctatatcacttcttttagtgaaatagtttcacagtagaaaaatggactgatttttaacttaattatggggcatgagcatccgcatgtatagtttctccttttctggtggacagttgttattcttttttctggagaaatctccagttcaattaaacctatgaaaactcaatttttctatgttcacgaagaaattattaaaggtagggataggcatggtctctttctcaccaaatttctaagaccaaactcaacttcgtttggaagatta
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| CDS seq | atgtgtaggcgtttcttgtttcaggaattctcgtccgtgctgtccagatcgatgcctaatcgtcctacctccgctgaaggaggaggcgtttctgctatcaacaatgtttttaatggagctctccgtcgttttagcacggtgattcccaataaccatggccttcctttttctcaagcaaagtgcctgaattctattcaaagccctaacgcagctaccaaagcaaaccacccaacaattggtgtggttccttttgccagccggactttcttctcttatacaaaaccctaccacctgccttctctgggtgaaaccaattacctggattatgcagcagcagactttaaagcgtaa |
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| Protein seq | MCRRFLFQEFSSVLSRSMPNRPTSAEGGGVSAINNVFNGALRRFSTVIPNNHGLPFSQAKCLNSIQSPNAATKANHPTIGVVPFASRTFFSYTKPYHLPSLGETNYLDYAAADFKA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0028240 | OsLima_05g0028240.01 | Chr05 | 30226368 | 30228132 | + | NAM | ||
| CDS seq | atgtgtaggcgtttcttgtttcaggaattctcgtccgtgctgtccagatcgatgcctaatcgtcctacctccgctgaaggaggaggcgtttctgctatcaacaatgtttttaatggagctctccgtcgttttagcacggtgattcccaataaccatggccttcctttttctcaagcaaagtgcctgaattctattcaaagccctaacgcagctaccaaagcaaaccacccaacaattggtgtggttccttttgccagccggactttcttctcttatacaaaaccctaccacctgccttctctgggtgaaaccaattacctggattatgcagcagcagactttaaagcgtaa
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| Protein seq | MCRRFLFQEFSSVLSRSMPNRPTSAEGGGVSAINNVFNGALRRFSTVIPNNHGLPFSQAKCLNSIQSPNAATKANHPTIGVVPFASRTFFSYTKPYHLPSLGETNYLDYAAADFKA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0580900 | RBH | 4.900914 | 4.020111 | 6.938580 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50815 | RBH | 0.000000 | 0.000000 | 0.242455 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0580900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028650 | RBH | 0.0 | 0.0 | 1.101125 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028440 | RBH | 0.0 | 0.0 | 0.761713 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028440 | RBH | 0.0 | 0.0 | 4.206802 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028500 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028390 | RBH | 3.254658 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0456000 | RBH | 0.18376 | 0.266255 | 0.20374 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0469000 | RBH | 0.2445765 | 0.213809 | 0.369144 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0028130 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028380 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028370 | RBH | 0.256364 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028420 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027930 | RBH | 0.000000 | 0.0 | 0.223956 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028450 | RBH | 0.0 | 0.0 | 0.481457 |
