Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_05g0024920 OGI:05072600 | 8/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr05:27633358-27640726
Gene Symbol OsFbox274, Os_F0450
DNA seq

gcgcaggcaaaattattgccaaaatgcatagtaaaatattgcagctttcacagtatcaatttcacatatgtagtaatctacaaaatgaggtgctccacattagttcagtttacatcagacggattccggattcccaagtttaaaataaattatatctgtaacgtctttctcccgggccgtgaaattctgtagaaatattaagtactactaccgcctttcaccacgaaaagacaaatcacgtcatatagctttcaaaaaatcacccctttcatttgaggggcactgccttacatcaggagaagacatatcataaatcatgttacttgctctcaaaaatccatcccgctcatctgcggcatccgactggccattctggcctttgctgctgggggctcagcaacagctgcctctgtcgttgtcatcagcaaagaaacactgaaacaaaaacacagttattaagcaagtgtggaaattttagtaatgcaaaggaaaaatagtaatcaacttaaggaacgtgcgtaccttgatgcatcttgtagcgctgttcggatgactttcacagggtcgatgatcccagccttaatcatgtcaacatactcccctgtagttggcaaagagcaggaatcagctaatgaatcataaagattactatgcttttgaaggcatatggatagccttttcaaggactatctaaaccgcaataattttgttacagccagtaatgccaaaacatagctaaacagcacaaacctcttgctgcatcatagcccatattaagattatcttgttcaattagcttcccaatgaccacaccaccatcaatgccagcatttgcagctatagtcatcaaaggagcctacagaaattcagagattattacatgtttaagaaacaagccatcaggcacatgaaacgctaaaaccaatacaggaactaaccttcaaagcattcttgataatttgaactccaatcttttcatcctcatttgctgtgataatcttgtcaagctccttggtggcatacagaagggcaactccaccacctgtttgaagttccaaattggcacaaaacatatggacaagttacacgaaagcaaaacatcaagaaacaagtttaggaaaaaagacaccaaagtggaaaaaataagaaaaccgtcactacacctggtacaatgccctcctccacagcagcccttgctgcatgtaaagcgtctgttaccctatcttttttctcaccaacttcaacttcactagttcccccaatctgcagtcaaaatggatatcctgagaggagcaaagtggggaaaagaaatacagtgaaacatcactgtgcacctgaaaaataacaaaccttgaggacagcaacaccaccagataactttgatagacgttcttgagccttttctttgtcaaatacagcagtgcttttgtccattgattctctaagctgttaagggcattcacataacaaacaatttaatttctatcaaaggagaatccggccactattatctagatagttgggatgaaggtcaagagtgacaattttattgcagcacctgttgacacctctcctctatctgctgtttgtcgcctccaccatctagaatgatagtatcatcaagggatacagtaacctgtaaaggaaattctcactgtctgtttctcaggtgaaataatttgtgaagattgacaaacctttttagcagtgccaagcatttgtagttcgactttaccaagatcaagaccttggtcctcgctgacaaccttgaaattaaattaaacgaaataagcaagccaatttcagtcatattgtatcacttgtgtttaaggacttttatggttgttgatcatgactgacctctcctcctgtcaacacagccacgtcatccagattggctcttctgttttcaccaaatccaggagctttgacagcacatatctataatcgatgcatgataattactaatttaccagaatatcaacgatccatagctctagcttgaagaaggtaagaagcttgcactttaactaacaacggacacatatcatcaagcagcttgtatacgcaattcagtattgtatacagtaggaccagtagttaatatcacctttaatccagcacgatgcttgttcagaacaagcattgatagagcttctccctcaacatcctcagcaatgatgagaagaggcctacgattctgcatacatgagacactggttagtactaaaccaatttaccattgccatattcaaaagaagctgagacattatgggacataatcaccttgatagacatttctaaaactggaagaagtgaattcatcgttgagattttcttgtcatgaattagaataagaggattttccatctcctgcacaaacatagggatacatgagatcgtctcagaccattatttggaatattccatgccagttgatacaactctcatatatattttctctgctctcatcaggtcttttctgggtctaaagctatctaagaaaccaacttaacaaacaggaaataaaaccttgcaaggataagcaccctgagtcatcctataaggtcaacactaagagacataatctactaatgattatatcaaagtggcagaaaaccaaaaccaatcaaaatacacaacctgactcacaattattactgatgtgatccacttccatgcatatttccatcataaagtcaaagcaaatgagggaatgtagcgaactttctacaatgtagttcatgctggattcactgatttgaccaagaaatacagacttacacacttctgagtcttctgatcagtcacaaagtaaggagatatgtagcctctggaaagtttcattccctgtaccgcttcaagctcattgtctaatgtcttgccatcctgccaatttcccaaaataagttgcagcctaggtaagtaggtattaccaaatagaatgattctgcagtatgaggctaataataaaagcagcacttggtactcacagtaatagtaataactccatcctttccaaccttttccatcgcctttgatatcaaatctcctatttccttttctccatttgcagaaatagttgctacctggtttacagaaatatgaaataacatattcttaagcatgcaagaatgcgggataattactatggaaagtttgcagtaatatagagtcaaagtgattatttagcttatttacagcagatgcaaacaataactacagcaaagatgcataagcaactcaatatggtttatacaatgtagctggagggagcagagagatcaaaataccactccaaaccagagcatcccacctgatttatttcttctgaggagttgataatccatgctttacttttgaggtgtgtagtgatagaacttatggccttgtttatgccattacgtaagtccataacattgacccctgctgccacagccttgcagccttccgtaagaatagcctgtgtaagtacagttgcacaagtggtacctgttaccccatacaaccagaaatgcagtgagtgacactgaatattatattcatgctagtaattatgctattcatagggttgataatgtttgcgatgaggcccccaaaaaaaaacagaacatgaaaaccacacatatcagaaactattgccgccattatccactgtgagaacttaagtcactgagcatcacactcaagtgagtttacttaagaatcaatattttgattcatgctatcagaatttacctatcctgacaacacattcattactagctgacaagaaggattaacacatatagcagaaaaaacagattaacaatatgcttgtttgcgttgagtaggcttacaaatcaaacgggatgctaatctgctatgctcaaagctcaatcgaatatatagttcatatggcagctcaagtaaagtaatttcctagagctcggtccttaccatctcctgcgaccttattagtagcttcagcaacttgcttcaccaggtttgcaccaacattcttagcactgtcctcaaactcaatgctttttgcaaccgtgactccatcctttgtgactttgggagctctatgggatctctcgataatcacattgcgcccctacaacgacacagacaaacacgcccattcagtcgccaaatcgagtgcgaaaatctagcgcttccaccactagatccagcccgatcgctgcaacactctccccaaccaatccacgcatctcggagtctgtcagagagcacgaaccttggggcccatggtgaccttgacggcgtcggcgaggtcgttcacgccctgcagcaaggcggcccgggctccgacgccgaacgccacctccttcgccgcatacccccgcgcccacagccgctgctccccgcaaccgccgcgcgacagctgcctcgcaagcaagagtccccgtccgttagcgtcgcccggaagagatgcgtcaggtgggaaggaggaggaggcggaggtagcgcgccggttacctgcttccgcagcgccgacgaggacctcgaaatcgacgacgccgccgccgccgccgcccggtacatggtggcgagtactcgcgattgctccttcctccggcggctttgcttgcggcttcgcaatttcgattcgagaagagagagagagggttttgctagggaagaagggttttgggttccggaagcttcggctccacgtacggtccatgggcctaagaagtccaatgggcctaggtccagtttgacaaaatgacaaaatggtccccgagaccccgacttcttgctttggtgactgatatcactagtgaaagagacaatccattatatgccactgactttgtcatacatctatgatttatcactgactttgttatgttctacaatatgccatcgacttttgcttaacttctacgatttaccatcgccgtccggttaacctccgttagcactgtacaaatttgttcaaatgaccaaaatacccctaggacaaattttgtacagtactacagtactacaacattaaatctatatacagtgaaacattatgagtacactaggtgaaaacatttttttgagacacgtagcaggttggggcatgacaaatagtggggcccaggggcacacgtgcgcgtatgtaggggagtgctcgattttgctccccccgccagtcgactagcagaaggaaaatcggcttaaattaggcaaaagtaaaacttgagaacgaaactggatggcaggtagaaacataaggcttcaactaaatacaaacggatatgtataaataaaaaaacagagttcgtgcaaaaaaaacacataaaaagtaacacaaataaattaagagcaatatattttcgcttaaatttaaattttagaactaatttttaagttgcttttgtggttttcttcatcatattttattttacaacatttgcttttgaatcgctaataacatatataaaaatgtctttttttttaatggtcaggctgttatcaacgttttatatatagaagaaggtgtctcattttaatgaggaaaagagaacaaacgatacagtgaacagtacttagggaaaactgggctaaaactgtataaaaaagttttaccagtttagttgctaataagcggtatgaatgcgcataaacataagacaaacagtgactccgtaagatcaaaatgcatgcagtataacttaaagccttgtatacaggtaacttaaagccttgtatacaggtaacacattaatataagagatcactctagaactacttgaactgaagttgtggagcaagaatctctatgggcaaactggttcagaatctgggatctctcctcatcactccaatggtgttggagcctcacgattttccagtcccaacgccccatttcttcaacacgcccatatctaaacagagcaacaagctgcaatgccgttgatacttccatcacaaagttaacaaagtaaacctgtctctctgttccctcgaagccaactacaaccagctccttcagcttttcatgctgcaaagtggatggtttccaaatgatttcatcacaatgctcatcatcccaaggggtaatatggatgtgaaggctctccaggcatggtgctgcttcgagcaggagtcgaggctaagagacatcccatgatgaaggcacatcagcaatcaggagccttgtgagattagccagcaacaatgaggggcaagatggcacgaaccatctcccatatccagtgaatcgtaggaccaggttcgttatgttcttggtgaatccaagaaacctctcgatgttcaagtcccaaccaatacataaatcacgcagacgattaatgtaaccatggcgtaagttcaggttcatgtgcataacacgcgagaaggaggagtgatgtttgtaactcacccaggtctccctgatagctattctctcgagcatcccaagagagtgtagcgcgatgacgctgcagaactacacggtaagctgcttgatccctgacctgggggcgtcgatgaccagaattccctgacccacccagcggcatgatttgaggtgtagaacttgcagctgagggcatgagctgatcacggcttcgtagaatgatttgggcatggagttttgcaagtcttgcaaggtcaattcggtgagagcttgaaacccctgcaatggcggaatgatgcagcctcctagcttcaggcttctcaggcgggacttctgattgcagagaccatggtgaggaaatctgtggacatccggcggtatagaccaataagcagatttggcgaaaacctcaagatcctcgactccccaagcgtccaatgccttggtgatcaatcggttcataagatcggtgtagtgagtggcaaagaactccacccgcagcctgccgatccgacgacgacgacgacgagctcggccggcacggtcatggctgtcatccgcgtcgaggaagctgccgatggaggcggccatgtttcgcatggcgaggcgctcttgccgcttgatggtggcgacgagagccttggcgtcaccgttgtacgcgatggtttcgtggagttggacggacctgtggtagcgcggcgggagtacgtcgccgaccacgaaatcgagggcgtcgagctcgcgacggagcggggcccagcgcgtggagagcatcgcggcggcgagcgcggcgcgggtgtcgagacgccgcaggatgaggaggagcacgtcgtcggagaggtcgctgatgcggtcgccgtcgcagggcgccgccacgggtgtccggcgtcgacggagacagtacagcgccgccgccgcccccttcctcccagcggcgtctccgtaggtcgcgggatcccggtggcggcgccggtagaacgcacctttcctccccttcctcctagccat

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CDS seq

atggctaggaggaaggggaggaaaggtgcgttctaccggcgccgccaccgggatcccgcgacctacggagacgccgctgggaggaagggggcggcggcggcgctgtactgtctccgtcgacgccggacacccgtggcggcgccctgcgacggcgaccgcatcagcgacctctccgacgacgtgctcctcctcatcctgcggcgtctcgacacccgcgccgcgctcgccgccgcgatgctctccacgcgctgggccccgctccgtcgcgagctcgacgccctcgatttcgtggtcggcgacgtactcccgccgcgctaccacaggtccgtccaactccacgaaaccatcgcgtacaacggtgacgccaaggctctcgtcgccaccatcaagcggcaagagcgcctcgccatgcgaaacatggccgcctccatcggcagcttcctcgacgcggatgacagccatgaccgtgccggccgagctcgtcgtcgtcgtcgtcggatcggcaggctgcgggtggagttctttgccactcactacaccgatcttatgaaccgattgatcaccaaggcattggacgcttggggagtcgaggatcttgaggttttcgccaaatctgcttattggtctataccgccggatgtccacagatttcctcaccatggtctctgcaatcagaagtcccgcctgagaagcctgaagctaggaggctgcatcattccgccattgcaggggtttcaagctctcaccgaattgaccttgcaagacttgcaaaactccatgcccaaatcattctacgaagccgtgatcagctcatgccctcagctgcaagttctacacctcaaatcatgccgctgggtgggtcagggaattctggtcatcgacgcccccagcgtcatcgcgctacactctcttgggatgctcgagagaatagctatcagggagacctggcctcgactcctgctcgaagcagcaccatgcctggagagccttcacatccatattaccccttgggatgatgagcattgtgatgaaatcatttggaaaccatccactttgcagcatgaaaagctgaaggagctggttgtagttggcttcgagggaacagagagacaggtttactttgttaactttgtgatggaagtatcaacggcattgcagcttgttgctctgtttagatatgggcgtgttgaagaaatggggcgttgggactggaaaatcgtgaggctccaacaccattggagtgatgaggagagatcccagattctgaaccagtttgcccatagagattcttgctccacaacttcagttcaaccgcaagcaaagccgccggaggaaggagcaatcgcgagtactcgccaccatgtaccgggcggcggcggcggcggcgtcgtcgatttcgaggtcctcgtcggcgctgcggaagcaggtaaccggcgcgctacctccgcctcctcctccttcccacctgacgcatctcttccgggcgacgctaacggacggggactcttgcttgcgaggcagctgtcgcgcggcggttgcggggagcagcggctgtgggcgcgggggtatgcggcgaaggaggtggcgttcggcgtcggagcccgggccgccttgctgcagggcgtgaacgacctcgccgacgccgtcaaggtcaccatgggccccaaggggcgcaatgtgattatcgagagatcccatagagctcccaaagtcacaaaggatggagtcacggttgcaaaaagcattgagtttgaggacagtgctaagaatgttggtgcaaacctggtgaagcaagttgctgaagctactaataaggtcgcaggagatggtaccacttgtgcaactgtacttacacaggctattcttacggaaggctgcaaggctgtggcagcaggggtcaatgttatggacttacgtaatggcataaacaaggccataagttctatcactacacacctcaaaagtaaagcatggattatcaactcctcagaagaaataaatcaggtagcaactatttctgcaaatggagaaaaggaaataggagatttgatatcaaaggcgatggaaaaggttggaaaggatggagttattactattactgatggcaagacattagacaatgagcttgaagcggtacagggaatgaaactttccagaggctacatatctccttactttgtgactgatcagaagactcagaagtgtgagatggaaaatcctcttattctaattcatgacaagaaaatctcaacgatgaattcacttcttccagttttagaaatgtctatcaagaatcgtaggcctcttctcatcattgctgaggatgttgagggagaagctctatcaatgcttgttctgaacaagcatcgtgctggattaaagttaaagtgcaagcttcttaccttcttcaagctagagctatggatcgttgatattctgatatgtgctgtcaaagctcctggatttggtgaaaacagaagagccaatctggatgacgtggctgtgttgacaggaggagaggttgtcagcgaggaccaaggtcttgatcttggtaaagtcgaactacaaatgcttggcactgctaaaaaggttactgtatcccttgatgatactatcattctagatggtggaggcgacaaacagcagatagaggagaggtgtcaacagcttagagaatcaatggacaaaagcactgctgtatttgacaaagaaaaggctcaagaacgtctatcaaagttatctggtggtgttgctgtcctcaagattgggggaactagtgaagttgaagttggtgagaaaaaagatagggtaacagacgctttacatgcagcaagggctgctgtggaggagggcattgtaccaggtggtggagttgcccttctgtatgccaccaaggagcttgacaagattatcacagcaaatgaggatgaaaagattggagttcaaattatcaagaatgctttgaaggctcctttgatgactatagctgcaaatgctggcattgatggtggtgtggtcattgggaagctaattgaacaagataatcttaatatgggctatgatgcagcaagaggggagtatgttgacatgattaaggctgggatcatcgaccctgtgaaagtcatccgaacagcgctacaagatgcatcaagtgtttctttgctgatgacaacgacagaggcagctgttgctgagcccccagcagcaaaggccagaatggccagtcggatgccgcagatgagcgggatggatttttga

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Protein seq

MARRKGRKGAFYRRRHRDPATYGDAAGRKGAAAALYCLRRRRTPVAAPCDGDRISDLSDDVLLLILRRLDTRAALAAAMLSTRWAPLRRELDALDFVVGDVLPPRYHRSVQLHETIAYNGDAKALVATIKRQERLAMRNMAASIGSFLDADDSHDRAGRARRRRRRIGRLRVEFFATHYTDLMNRLITKALDAWGVEDLEVFAKSAYWSIPPDVHRFPHHGLCNQKSRLRSLKLGGCIIPPLQGFQALTELTLQDLQNSMPKSFYEAVISSCPQLQVLHLKSCRWVGQGILVIDAPSVIALHSLGMLERIAIRETWPRLLLEAAPCLESLHIHITPWDDEHCDEIIWKPSTLQHEKLKELVVVGFEGTERQVYFVNFVMEVSTALQLVALFRYGRVEEMGRWDWKIVRLQHHWSDEERSQILNQFAHRDSCSTTSVQPQAKPPEEGAIASTRHHVPGGGGGGVVDFEVLVGAAEAGNRRATSASSSFPPDASLPGDANGRGLLLARQLSRGGCGEQRLWARGYAAKEVAFGVGARAALLQGVNDLADAVKVTMGPKGRNVIIERSHRAPKVTKDGVTVAKSIEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILTEGCKAVAAGVNVMDLRNGINKAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDLISKAMEKVGKDGVITITDGKTLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLILIHDKKISTMNSLLPVLEMSIKNRRPLLIIAEDVEGEALSMLVLNKHRAGLKLKCKLLTFFKLELWIVDILICAVKAPGFGENRRANLDDVAVLTGGEVVSEDQGLDLGKVELQMLGTAKKVTVSLDDTIILDGGGDKQQIEERCQQLRESMDKSTAVFDKEKAQERLSKLSGGVAVLKIGGTSEVEVGEKKDRVTDALHAARAAVEEGIVPGGGVALLYATKELDKIITANEDEKIGVQIIKNALKAPLMTIAANAGIDGGVVIGKLIEQDNLNMGYDAARGEYVDMIKAGIIDPVKVIRTALQDASSVSLLMTTTEAAVAEPPAAKARMASRMPQMSGMDF

Function Chaperonin CPN60-like 2, mitochondrial [UniProtKB/Swiss-Prot:Q93ZM7]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_05g0024920 OsNaBo_05g0024920.01 Chr05 27633358 27640726 - NAM
CDS seq

atggctaggaggaaggggaggaaaggtgcgttctaccggcgccgccaccgggatcccgcgacctacggagacgccgctgggaggaagggggcggcggcggcgctgtactgtctccgtcgacgccggacacccgtggcggcgccctgcgacggcgaccgcatcagcgacctctccgacgacgtgctcctcctcatcctgcggcgtctcgacacccgcgccgcgctcgccgccgcgatgctctccacgcgctgggccccgctccgtcgcgagctcgacgccctcgatttcgtggtcggcgacgtactcccgccgcgctaccacaggtccgtccaactccacgaaaccatcgcgtacaacggtgacgccaaggctctcgtcgccaccatcaagcggcaagagcgcctcgccatgcgaaacatggccgcctccatcggcagcttcctcgacgcggatgacagccatgaccgtgccggccgagctcgtcgtcgtcgtcgtcggatcggcaggctgcgggtggagttctttgccactcactacaccgatcttatgaaccgattgatcaccaaggcattggacgcttggggagtcgaggatcttgaggttttcgccaaatctgcttattggtctataccgccggatgtccacagatttcctcaccatggtctctgcaatcagaagtcccgcctgagaagcctgaagctaggaggctgcatcattccgccattgcaggggtttcaagctctcaccgaattgaccttgcaagacttgcaaaactccatgcccaaatcattctacgaagccgtgatcagctcatgccctcagctgcaagttctacacctcaaatcatgccgctgggtgggtcagggaattctggtcatcgacgcccccagcgtcatcgcgctacactctcttgggatgctcgagagaatagctatcagggagacctggcctcgactcctgctcgaagcagcaccatgcctggagagccttcacatccatattaccccttgggatgatgagcattgtgatgaaatcatttggaaaccatccactttgcagcatgaaaagctgaaggagctggttgtagttggcttcgagggaacagagagacaggtttactttgttaactttgtgatggaagtatcaacggcattgcagcttgttgctctgtttagatatgggcgtgttgaagaaatggggcgttgggactggaaaatcgtgaggctccaacaccattggagtgatgaggagagatcccagattctgaaccagtttgcccatagagattcttgctccacaacttcagttcaaccgcaagcaaagccgccggaggaaggagcaatcgcgagtactcgccaccatgtaccgggcggcggcggcggcggcgtcgtcgatttcgaggtcctcgtcggcgctgcggaagcaggtaaccggcgcgctacctccgcctcctcctccttcccacctgacgcatctcttccgggcgacgctaacggacggggactcttgcttgcgaggcagctgtcgcgcggcggttgcggggagcagcggctgtgggcgcgggggtatgcggcgaaggaggtggcgttcggcgtcggagcccgggccgccttgctgcagggcgtgaacgacctcgccgacgccgtcaaggtcaccatgggccccaaggggcgcaatgtgattatcgagagatcccatagagctcccaaagtcacaaaggatggagtcacggttgcaaaaagcattgagtttgaggacagtgctaagaatgttggtgcaaacctggtgaagcaagttgctgaagctactaataaggtcgcaggagatggtaccacttgtgcaactgtacttacacaggctattcttacggaaggctgcaaggctgtggcagcaggggtcaatgttatggacttacgtaatggcataaacaaggccataagttctatcactacacacctcaaaagtaaagcatggattatcaactcctcagaagaaataaatcaggtagcaactatttctgcaaatggagaaaaggaaataggagatttgatatcaaaggcgatggaaaaggttggaaaggatggagttattactattactgatggcaagacattagacaatgagcttgaagcggtacagggaatgaaactttccagaggctacatatctccttactttgtgactgatcagaagactcagaagtgtgagatggaaaatcctcttattctaattcatgacaagaaaatctcaacgatgaattcacttcttccagttttagaaatgtctatcaagaatcgtaggcctcttctcatcattgctgaggatgttgagggagaagctctatcaatgcttgttctgaacaagcatcgtgctggattaaagttaaagtgcaagcttcttaccttcttcaagctagagctatggatcgttgatattctgatatgtgctgtcaaagctcctggatttggtgaaaacagaagagccaatctggatgacgtggctgtgttgacaggaggagaggttgtcagcgaggaccaaggtcttgatcttggtaaagtcgaactacaaatgcttggcactgctaaaaaggttactgtatcccttgatgatactatcattctagatggtggaggcgacaaacagcagatagaggagaggtgtcaacagcttagagaatcaatggacaaaagcactgctgtatttgacaaagaaaaggctcaagaacgtctatcaaagttatctggtggtgttgctgtcctcaagattgggggaactagtgaagttgaagttggtgagaaaaaagatagggtaacagacgctttacatgcagcaagggctgctgtggaggagggcattgtaccaggtggtggagttgcccttctgtatgccaccaaggagcttgacaagattatcacagcaaatgaggatgaaaagattggagttcaaattatcaagaatgctttgaaggctcctttgatgactatagctgcaaatgctggcattgatggtggtgtggtcattgggaagctaattgaacaagataatcttaatatgggctatgatgcagcaagaggggagtatgttgacatgattaaggctgggatcatcgaccctgtgaaagtcatccgaacagcgctacaagatgcatcaagtgtttctttgctgatgacaacgacagaggcagctgttgctgagcccccagcagcaaaggccagaatggccagtcggatgccgcagatgagcgggatggatttttga

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Protein seq

MARRKGRKGAFYRRRHRDPATYGDAAGRKGAAAALYCLRRRRTPVAAPCDGDRISDLSDDVLLLILRRLDTRAALAAAMLSTRWAPLRRELDALDFVVGDVLPPRYHRSVQLHETIAYNGDAKALVATIKRQERLAMRNMAASIGSFLDADDSHDRAGRARRRRRRIGRLRVEFFATHYTDLMNRLITKALDAWGVEDLEVFAKSAYWSIPPDVHRFPHHGLCNQKSRLRSLKLGGCIIPPLQGFQALTELTLQDLQNSMPKSFYEAVISSCPQLQVLHLKSCRWVGQGILVIDAPSVIALHSLGMLERIAIRETWPRLLLEAAPCLESLHIHITPWDDEHCDEIIWKPSTLQHEKLKELVVVGFEGTERQVYFVNFVMEVSTALQLVALFRYGRVEEMGRWDWKIVRLQHHWSDEERSQILNQFAHRDSCSTTSVQPQAKPPEEGAIASTRHHVPGGGGGGVVDFEVLVGAAEAGNRRATSASSSFPPDASLPGDANGRGLLLARQLSRGGCGEQRLWARGYAAKEVAFGVGARAALLQGVNDLADAVKVTMGPKGRNVIIERSHRAPKVTKDGVTVAKSIEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILTEGCKAVAAGVNVMDLRNGINKAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDLISKAMEKVGKDGVITITDGKTLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLILIHDKKISTMNSLLPVLEMSIKNRRPLLIIAEDVEGEALSMLVLNKHRAGLKLKCKLLTFFKLELWIVDILICAVKAPGFGENRRANLDDVAVLTGGEVVSEDQGLDLGKVELQMLGTAKKVTVSLDDTIILDGGGDKQQIEERCQQLRESMDKSTAVFDKEKAQERLSKLSGGVAVLKIGGTSEVEVGEKKDRVTDALHAARAAVEEGIVPGGGVALLYATKELDKIITANEDEKIGVQIIKNALKAPLMTIAANAGIDGGVVIGKLIEQDNLNMGYDAARGEYVDMIKAGIIDPVKVIRTALQDASSVSLLMTTTEAAVAEPPAAKARMASRMPQMSGMDF

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Gene Transcript Chromosome Start End Strand Source
OsNaBo_05g0024920 OsNaBo_05g0024920.02 Chr05 27633421 27637957 - IsoSeq
CDS seq

ccgcaagcaaagccgccggaggaaggagcaatcgcgagtactcgccaccatgtaccgggcggcggcggcggcggcgtcgtcgatttcgaggtcctcgtcggcgctgcggaagcagctgtcgcgcggcggttgcggggagcagcggctgtgggcgcgggggtatgcggcgaaggaggtggcgttcggcgtcggagcccgggccgccttgctgcagggcgtgaacgacctcgccgacgccgtcaaggtcaccatgggccccaaggggcgcaatgtgattatcgagagatc

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Protein seq

PQAKPPEEGAIASTRHHVPGGGGGGVVDFEVLVGAAEAAVARRLRGAAAVGAGVCGEGGGVRRRSPGRLAAGRERPRRRRQGHHGPQGAQCDYREI

OsNaBo_05g0024920.02OsNaBo_05g0024920.01AS27634000 bp27635000 bp27636000 bp27637000 bp27638000 bp27639000 bp27640000 bp27641000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr05 27637601 27637957 - OsNaBo_05g0024920.01 OsNaBo_05g0024920.01,OsNaBo_05g0024920.02 All
SE Chr05 27635298 27635468 - OsNaBo_05g0024920.01 OsNaBo_05g0024920.01,OsNaBo_05g0024920.02 All

Expression

Leaf Root Panicle
FPKM 0.725852 7.097637 4.571189

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_05g0540300 RBH 1.601714 3.074149 8.750010
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g46290 RBH 1.077114 2.056075 2.239846
Nipponbare | IRGSP 1.0 | RAP-db Os05g0540300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_05g0025290 RBH 0.866018 7.259214 5.087054
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0025070 RBH 0.146362 6.960260 3.486016
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0025070 RBH 1.551368 19.638014 10.890337
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_05g0025120 RBH 0.092447 0.291916 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_05g0025100 RBH 4.895846 27.178621 23.317686
Minghui 63 | MH63RS3 | HZAU OsMH63_05G0417200 RBH 4.79207 7.2363415 9.233693
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0024760 RBH 0.084138 0.632122 1.137585
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0428600 RBH 4.40394 5.007453 15.6880525
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_05g0024940 RBH 0.216328 0.077403 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0024820 RBH 0.113373 13.766721 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_05g0025010 RBH 1.832306 11.401335 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_05g0025010 RBH 0.034361 1.313307 0.396656
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_05g0025060 RBH 0.000000 3.053540 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_05G024500 RBH 0.337877 9.166080 1.308380
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0024940 SBH 0.192939 3.310890 1.220308
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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