Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0025070 | OGI:05072600 | 8/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:27310637-27315276 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcgcaggcaaaattattgccaaaatgcatagtaaaatattgcagctttcacagtatcaatttcacatatgtagtaatctacaaaatgaggtgctgctccacattagttcagtttacatcagacggattcccaattcccaagtttaaaataaattatatctgtaacgtctttctcccgggccgtgaaattctgtagaaatattaagtactactactgcctttcaccacgaaaagacaaaatcacgtcatatagctttcaaaaaatcacccctttcatttgaggggcactgccttacatcaggagaagacatatcataaatcatgttacttgctctcaaaaatccatcccgctcatctgcggcatccgactagccattctggcctttgctgctgggggctcagcaacagctgcctctgtcgttgtcatcagcaaagaaacactgaaacaaaaacacaagttattaagcaagtgtggaaattttagtaatgcaaaggaaaaatagtaatcaacttaaggaacgtgcgtaccttgatgcatcttgtagcgctgttcggatgactttcacagggtcgatgatcccagccttaatcatgtcaacatactcccctgtagttggcaaagagcaggaatcagctaatgaatcataaagattactatgcttttgaaggcatatggatagccttttcaaggactatctaaaccgcaataaaggaactcaacataatttttgttacagccagtaatgccaaaacatagctaaacagcacaaacctcttgctgcatcatagcccatattaagattatcttgttcaattagcttcccaatgaccacaccaccatcaatgccagcatttgcagctatagtcatcaaaggagcctacagaaattcagagattattacatgtttaagaaacaagccatcaggcacatgaaacgccaaaaccaatacaggaactaaccttcaaagcattcttgataatttgaactccaatcttttcatcctcatttgctgtgataatcttgtcaagctccttggtggcatacagaagggcaactccaccacctgtttgaagttccaaattggcacaaaacatatggacaagttacacgaaagcaaaacatcaagaaacaagtttaggaaaaaagacaccaaagtggaaaaaataagaaaaccgtcactacacctggtacaatgccctcctccacagcagcccttgctgcatgtaaagcgtctgttaccctatcttttttctcaccaacttcaacttcactagctcccccaatctgcagtcaaaatggatatcctgagaggagcaaagtggggaaaagaaatacagtgaaacatcactgtgcacctgaaaaataacaaaccttgaggacagcaacaccaccagataactttgatagacgttcttgagccttttctttgtcaaatacagcagtgcttttgtccattgattctctaagctgttaagggcattcacataacaaacaatttaatttctatcaaaggagaatccggccactattatctagatagttgggatgaaggtcaagagtgacaattttattgcagcacctgttgacacctctcctctatctgctgtttgtcgcctccaccatctagaatgatagtatcatcaagggatacagtaacctgtaaaggaaattctcactgtctgtttctcaggtgaaataatttgtgaagattgacaaacctttttagcagtgccaagcatttgtagttcgactttaccaagatcaagaccttggtcctcgctgacaaccttgaaattaaattaaacgaaataagcaagccaatttcagtcatattgtatcacttgtgtttaaggacttttatggttgttgatcatgactgacctctcctcctgtcaacacagccacgtcatccagattggctcttctgttttcaccaaatccaggagctttgacagcacatatctataatcgatgcatgataattactaatttaccagaatatcaacgatccatagctctagcttgaagaaggtaagaagcttgcactttaactaacaacggacacatatcatcaagcagcttgtatacgcaattcagtattgtatacagtaggaccagtagttaatatcacctttaatccagcacgatgcttgttcagaacaagcattgatagagcttctccctcaacatcctcagcaatgatgagaagaggcctacgattctgcatacatgagacactggttagtactaaaccaatttaccattgccatattcaaaagaagctgagacattatgggacataatcaccttgatagacatttctaaaactggaagaagtgaattcatcgttgagattttcttgtcatgaattagaataagaggattttccatctcctgcacaaacatagggatacatgagatcgtctcagaccattatttggaatattccatgccagttgatacaactctcatatatattttctctgctctcatcaggtcttttctgggtctaaagctatctaagaaaccaacttaacaaacaggaaataaaaccttgcaaggataagcaccctgagtcatcctataaggtcaacactaagagacataatctactaatgattatatcaaagtggcagaaaaccaaaaccaatcaaaatacacaacctgactcacaattattactgatgtgatccacttccatgcatatttccatcataaagtcaaagcaaatgagggaatgtagcgaactttctacaatgtagttcatgctggattcactgatttgaccaagaaatacagacttacacacttctgagtcttctgatcagtcacaaagtaaggagatatgtagcctctggaaagtttcattccctgtaccgcttcaagctcattgtctaatgtcttgccatcctgccaatttcccaaaataagttgcagcctaggtaagtaggtattaccaaatagaatgattctgcagtatgaggctaataataaaagcagcacttggtactcacagtaatagtaataactccatcctttccaaccttttccatcgcctttgatatcaaatctcctatttccttttctccatttgcagaaatagttgctacctggtttacagaaatatgaaataacatattcttaagcatgcaagaatgcgggataattactatggaaagtttgcagtaatatagagtcaaagtgattatttagcttatttacagcagatgcaaacaataactacagcaaagatgcataagcaactcaatatggtttatacaatgtagctggagggagcagagagatcaaaataccactccaaaccagagcatcccacctgatttatttcttctgaggagttgataatccatgctttacttttgaggtgtgtagtgatagaacttatggccttgtttatgccattacgtaagtccataacattgacccctgctgccacagccttgcagccttccgtaagaatagcctgtgtaagtacagttgcacaagtggtacctgttaccccatacaaccagaaatgcagtgagtgacactgaatattatattcatgctagtaattatgctattcatagggttgataatgtttgcgatgaggcccccaaaaaaaaaaacagaacatgaaaaccacacatatcagaaactattgccgccattatccactgtgagaacttaagtcactgagcatcacactcaagtgagtttacttaagaatcaatattttgattcatgctatcagaatttacctatcctgacgacacattcattactagctgacaagaaggattaacacatatagcagaaaaaacagattaacaatatgcttgtttgcattgagtaggcttacaaatcaaacgggatgctaatctgctatgctcaaagctcaatcgaatatatagttcatatggcagctcaagtaaagtaatttcctagagctcggtccttaccatctcctgcgaccttattagtagcttcagcaacttgcttcaccaggtttgcaccaacattcttagcactgtcctcaaactcaatgctttttgcaaccgtgactccatcctttgtgactttgggagctctatgggatctctcgataatcacattgcgcccctacaacgacacagacaaacacgcccattcagtcgccaaatcgagtgcgaaaatctagcgcttccaccactagatccagcccgatcgctgcaacactctccccaaccaatccacgcatctcggagtctgtcagagagcacgaaccttggggcccatggtgaccttgacggcgtcggcgaggtcgttcacgccctgcagcaaggcggcccgggctccgacgccgaacgccacctccttcgccgcatacccccgcgcccacagccgctgctccccgcaaccgccgcgcgacagctgcctcgcaagcaagagtccccgtccgttagcgtcgcccggaagagatgcgtcaggtgggaaggaggaggaggcggaggtagcgcgccggttacctgcttccgcagcgccgacgaggacctcgaaatcgacgacgccgccgccgccgccgcccggtacatggtggcgagtactcgcgattgctccttcctccggcggctttgcttgcggcttcgcaatttcgattc
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| CDS seq | atgtaccgggcggcggcggcggcggcgtcgtcgatttcgaggtcctcgtcggcgctgcggaagcagctgtcgcgcggcggttgcggggagcagcggctgtgggcgcgggggtatgcggcgaaggaggtggcgttcggcgtcggagcccgggccgccttgctgcagggcgtgaacgacctcgccgacgccgtcaaggtcaccatgggccccaaggggcgcaatgtgattatcgagagatcccatagagctcccaaagtcacaaaggatggagtcacggttgcaaaaagcattgagtttgaggacagtgctaagaatgttggtgcaaacctggtgaagcaagttgctgaagctactaataaggtcgcaggagatggtaccacttgtgcaactgtacttacacaggctattcttacggaaggctgcaaggctgtggcagcaggggtcaatgttatggacttacgtaatggcataaacaaggccataagttctatcactacacacctcaaaagtaaagcatggattatcaactcctcagaagaaataaatcaggtagcaactatttctgcaaatggagaaaaggaaataggagatttgatatcaaaggcgatggaaaaggttggaaaggatggagttattactattactgatggcaagacattagacaatgagcttgaagcggtacagggaatgaaactttccagaggctacatatctccttactttgtgactgatcagaagactcagaagtgtgagatggaaaatcctcttattctaattcatgacaagaaaatctcaacgatgaattcacttcttccagttttagaaatgtctatcaagaatcgtaggcctcttctcatcattgctgaggatgttgagggagaagctctatcaatgcttgttctgaacaagcatcgtgctggattaaagatatgtgctgtcaaagctcctggatttggtgaaaacagaagagccaatctggatgacgtggctgtgttgacaggaggagaggttgtcagcgaggaccaaggtcttgatcttggtaaagtcgaactacaaatgcttggcactgctaaaaaggttactgtatcccttgatgatactatcattctagatggtggaggcgacaaacagcagatagaggagaggtgtcaacagcttagagaatcaatggacaaaagcactgctgtatttgacaaagaaaaggctcaagaacgtctatcaaagttatctggtggtgttgctgtcctcaagattgggggagctagtgaagttgaagttggtgagaaaaaagatagggtaacagacgctttacatgcagcaagggctgctgtggaggagggcattgtaccaggtggtggagttgcccttctgtatgccaccaaggagcttgacaagattatcacagcaaatgaggatgaaaagattggagttcaaattatcaagaatgctttgaaggctcctttgatgactatagctgcaaatgctggcattgatggtggtgtggtcattgggaagctaattgaacaagataatcttaatatgggctatgatgcagcaagaggggagtatgttgacatgattaaggctgggatcatcgaccctgtgaaagtcatccgaacagcgctacaagatgcatcaagtgtttctttgctgatgacaacgacagaggcagctgttgctgagcccccagcagcaaaggccagaatggctagtcggatgccgcagatgagcgggatggatttttga
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| Protein seq | MYRAAAAAASSISRSSSALRKQLSRGGCGEQRLWARGYAAKEVAFGVGARAALLQGVNDLADAVKVTMGPKGRNVIIERSHRAPKVTKDGVTVAKSIEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILTEGCKAVAAGVNVMDLRNGINKAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDLISKAMEKVGKDGVITITDGKTLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLILIHDKKISTMNSLLPVLEMSIKNRRPLLIIAEDVEGEALSMLVLNKHRAGLKICAVKAPGFGENRRANLDDVAVLTGGEVVSEDQGLDLGKVELQMLGTAKKVTVSLDDTIILDGGGDKQQIEERCQQLRESMDKSTAVFDKEKAQERLSKLSGGVAVLKIGGASEVEVGEKKDRVTDALHAARAAVEEGIVPGGGVALLYATKELDKIITANEDEKIGVQIIKNALKAPLMTIAANAGIDGGVVIGKLIEQDNLNMGYDAARGEYVDMIKAGIIDPVKVIRTALQDASSVSLLMTTTEAAVAEPPAAKARMASRMPQMSGMDF |
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| Function | Chaperonin CPN60-like 2, mitochondrial [UniProtKB/Swiss-Prot:Q93ZM7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0025070 | OsCMeo_05g0025070.01 | Chr05 | 27310637 | 27315276 | - | NAM | ||
| CDS seq | atgtaccgggcggcggcggcggcggcgtcgtcgatttcgaggtcctcgtcggcgctgcggaagcagctgtcgcgcggcggttgcggggagcagcggctgtgggcgcgggggtatgcggcgaaggaggtggcgttcggcgtcggagcccgggccgccttgctgcagggcgtgaacgacctcgccgacgccgtcaaggtcaccatgggccccaaggggcgcaatgtgattatcgagagatcccatagagctcccaaagtcacaaaggatggagtcacggttgcaaaaagcattgagtttgaggacagtgctaagaatgttggtgcaaacctggtgaagcaagttgctgaagctactaataaggtcgcaggagatggtaccacttgtgcaactgtacttacacaggctattcttacggaaggctgcaaggctgtggcagcaggggtcaatgttatggacttacgtaatggcataaacaaggccataagttctatcactacacacctcaaaagtaaagcatggattatcaactcctcagaagaaataaatcaggtagcaactatttctgcaaatggagaaaaggaaataggagatttgatatcaaaggcgatggaaaaggttggaaaggatggagttattactattactgatggcaagacattagacaatgagcttgaagcggtacagggaatgaaactttccagaggctacatatctccttactttgtgactgatcagaagactcagaagtgtgagatggaaaatcctcttattctaattcatgacaagaaaatctcaacgatgaattcacttcttccagttttagaaatgtctatcaagaatcgtaggcctcttctcatcattgctgaggatgttgagggagaagctctatcaatgcttgttctgaacaagcatcgtgctggattaaagatatgtgctgtcaaagctcctggatttggtgaaaacagaagagccaatctggatgacgtggctgtgttgacaggaggagaggttgtcagcgaggaccaaggtcttgatcttggtaaagtcgaactacaaatgcttggcactgctaaaaaggttactgtatcccttgatgatactatcattctagatggtggaggcgacaaacagcagatagaggagaggtgtcaacagcttagagaatcaatggacaaaagcactgctgtatttgacaaagaaaaggctcaagaacgtctatcaaagttatctggtggtgttgctgtcctcaagattgggggagctagtgaagttgaagttggtgagaaaaaagatagggtaacagacgctttacatgcagcaagggctgctgtggaggagggcattgtaccaggtggtggagttgcccttctgtatgccaccaaggagcttgacaagattatcacagcaaatgaggatgaaaagattggagttcaaattatcaagaatgctttgaaggctcctttgatgactatagctgcaaatgctggcattgatggtggtgtggtcattgggaagctaattgaacaagataatcttaatatgggctatgatgcagcaagaggggagtatgttgacatgattaaggctgggatcatcgaccctgtgaaagtcatccgaacagcgctacaagatgcatcaagtgtttctttgctgatgacaacgacagaggcagctgttgctgagcccccagcagcaaaggccagaatggctagtcggatgccgcagatgagcgggatggatttttga
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| Protein seq | MYRAAAAAASSISRSSSALRKQLSRGGCGEQRLWARGYAAKEVAFGVGARAALLQGVNDLADAVKVTMGPKGRNVIIERSHRAPKVTKDGVTVAKSIEFEDSAKNVGANLVKQVAEATNKVAGDGTTCATVLTQAILTEGCKAVAAGVNVMDLRNGINKAISSITTHLKSKAWIINSSEEINQVATISANGEKEIGDLISKAMEKVGKDGVITITDGKTLDNELEAVQGMKLSRGYISPYFVTDQKTQKCEMENPLILIHDKKISTMNSLLPVLEMSIKNRRPLLIIAEDVEGEALSMLVLNKHRAGLKICAVKAPGFGENRRANLDDVAVLTGGEVVSEDQGLDLGKVELQMLGTAKKVTVSLDDTIILDGGGDKQQIEERCQQLRESMDKSTAVFDKEKAQERLSKLSGGVAVLKIGGASEVEVGEKKDRVTDALHAARAAVEEGIVPGGGVALLYATKELDKIITANEDEKIGVQIIKNALKAPLMTIAANAGIDGGVVIGKLIEQDNLNMGYDAARGEYVDMIKAGIIDPVKVIRTALQDASSVSLLMTTTEAAVAEPPAAKARMASRMPQMSGMDF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.551368 | 19.638014 | 10.890337 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0540300 | RBH | 1.601714 | 3.074149 | 8.750010 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g46290 | RBH | 1.077114 | 2.056075 | 2.239846 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0540300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025290 | RBH | 0.866018 | 7.259214 | 5.087054 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025070 | RBH | 0.146362 | 6.960260 | 3.486016 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025080 | SBH | 0.122071 | 0.646219 | 2.633886 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025120 | RBH | 0.092447 | 0.291916 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025100 | RBH | 4.895846 | 27.178621 | 23.317686 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0417200 | RBH | 4.79207 | 7.2363415 | 9.233693 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024760 | RBH | 0.084138 | 0.632122 | 1.137585 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0428600 | RBH | 4.40394 | 5.007453 | 15.6880525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024940 | RBH | 0.216328 | 0.077403 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024820 | RBH | 0.113373 | 13.766721 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025010 | RBH | 1.832306 | 11.401335 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025010 | RBH | 0.034361 | 1.313307 | 0.396656 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025060 | RBH | 0.000000 | 3.053540 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024500 | RBH | 0.337877 | 9.166080 | 1.308380 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024920 | RBH | 0.725852 | 7.097637 | 4.571189 |
