Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0023250 | OGI:05069210 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:26424980-26429139 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgatcgccatcgtcgcggccatcgtggcgttgctcgtgctcggcgcagtcgccgccgggctgctgtgcttctgctcgcgccgccgtcgccgccgccgccgccgccaaccaacatcgccgggtatgtgttcgaccgctcactttacaccactaacctggccggtgcaacgccggtgcagcaccggccggccaccggcgtgtcgcgcggacacgggtttgcattagcgcaagtcgtcggctcttcgccgccgccgcgcggttacgacgcatcgcgcacgcgcgcgcgcactttcgccatgtcgcgtcgtgcgcggtggtgacgtcacggaggcaaatggtgaccgtgacacgtggtcgtaaagttggatgcaccaaacggcttggggatatggagggacgatggacgtgttgctcttgcacaattcgatcaaacttgagctcttcttcaagttagttagtggacggaccgtgtagacgaagttggatgcaatcgagtactccctccgtcccaaaaaaaaaactcacttatatcctttgtgtaaatttgttatactaaagttaggttaaaTttttttatggagggagtatacacaaagtggtttagagggttttaaagttagtgtgttctggattgaaaatttcttgaagttaacaaatacttcatctttcacaaaatataataacctactacaatagattaatgaacgtgttcagatttgtagtagtagaaaatatctcatccgattctaagtagattcagaagtaaaattagctcatacactactttatttctgcatgaaattcttaacatctcttatggaacatttaccattgtgtcaccttaccaggtgatttcctcggacccttaccggtgacatcgcgtcatcaccagcaatcacaattcatcaagccaacagtaacatacccaccacagctgaatgcacactcgccgctgcaaagcagcagcaactccgacccaccgtcaccgctgctgcaaccgtctccacctccaccggcggcgagcggcggcacggtgtcgtacggcgacctggtggcggcgacgaacggcttctccgagggcaacctgctcggggagggcgggttcgggcacgtgtaccgcggcgagctgctcctgcacgacggccggaggcagccggtggccatcaagaagctccggccggggagccggcagggcgagcgcgagttccgcgccgaggtggacatcatcagccgcatccaccaccgcaacctcgtctccctcgtgggctactgcatccacgccgaccaccgcctcctcgtctacgagttcgtccccaacaagacgctggacttccacctccacggtactttctactctctctcagtttcatattatatgtcattttaattttttttcttagtccaacctttctaagtttgattaaatttatataaaaatatagtaacaactatcacatcaatttagtttcactggatgtatatattctgatactacgtttgttttgtgttaaaaatattgctcaaacctaaaaaaaattgacttgaaaaaagtcaaagtgatttataatataaaaataaaaggagtactgcacttctcgttttttaattttcgcgttgtctgcgccattcacgaaatgagagcttcttctcttcttctccggtgcagggagcagccggccgacgctggattggccacagaggtggatgatcgccgtcgggtcggccaaggggttggcctacctgcacgaagactgtaagttacttgtttttttCttctctctatcttggtctgaaattttcaagattttttctttgatttaaattcatgttgattgttgattgacttcaggtcgtccaaagattattcaccgagacatcaaggcagccaacatccttctcgattacaaattcgagccaaaggtaaacgaaggatgagatcattatcagtcacaccggccggcaagaagattaccacaaaacaattgctatatttcagaacgagcatttttgctgtgcatgcaggttgcggactttgggctagccaagatccaaccgggagacgacacacacgtttccacccgcgtgatgggcaccttcgggtaacacattcttagcgtgaccctattttttatttttaagataatggaatgaaacaacgtgattgatcaaagagatacaaccaattattatagaattcacacaaaaaaaaccccacacaaagttcacattgtgtttgtgtttgtgtttcacgagagtttagaatagtttatctgatgtgatggaaatacttcaagaagttataaggggacatcctgtactgttgatgcaatcgacgcttgtttattttttctttctttcagctacttggcgccggagtatgctgctactggcaaagtaaacgacagatcagacgtcttctccttcggtgtcgttcttctggagctgatcaccgggaagaggcctgtcatttcgactgagcccttcaacgacgagactctggtttcttgggtatgtataccatgcatgaatctctatggttctttcagtggttcagtttagtccagccatccatagttagtgttacaacttacaaataaagaacttggcggtactatgcatgaaaaacattgcaattttcatagcatttttgcatagtgacaactgagaagcagttgtcatgctaatctgggccggagctataacaaaatggagggtgatggcacttgtttaatttactctattttagattgagtttaagttgatacaggtgtctaagtttgtattgaagggggtgcatggtgaaaataaataaggtatagctaaacatttttcttgcatgggttcctgtacacccccgtaatatactctcgctccgcccccgcctggctatgactttaaaaaacttttagacatgatactttgtcgaaacttaacccctgcaggtccacttcttgctatcagattttcaacagactagtacagtgtcatagtacaatccaattctgacttctgacttcattttttaaaaaatatatatatattgtggattcagtgacagcatcgcgttacatctcgttaactaatggctgattattctgtaactgtaaggactactaaatttgttcttcttttatgttttggacgatgcaggcaaggcctcagctgacaaaagctctagagcagcatgtctacgacgatctgatcgatccaaagcttgacgccttgtacgacgcccacgacatgcatcggctgatctcctgcgctgccgccgcggtgcggcacacggcacgctcccgccctcgcatgacccaggtgagcctcccttggagaagaataaaatgtcatggtgttacatatcaactaaaatggttattattttttttaaaaaaaataattagatagaattgatatatgatatattacttcatcaatatataaattaaaattttgacttctacaagttgtaataaaaacaataacttgtgaagtcgaattggattgatatatctcatgccaatctattttatcattttctttaattatttttatataattatttagttgatatataataaaaaggtggatatggatatttaattattagaattatctccctgctgtgcaatgcaacttgcgaaacgaccaaagaaacaagtttctcttattgactttttgcccaaaaacctgagttcTttttttctgttcttgcaatggacgagcagattgtgagatacttggagggggagctgtcaatagatgacctgaacgccggcgtcgcaccggggcagagctcgctgcgctcgcaggagcactccggcgacatgacggagctggtgcggcggcggctcaggagggtcgcgttcccgccgggcagcggcgtcaccgtcaccggcaccggcgccgtcaccgacagcggctacctgagcgaggcgacgagcgagtacggggtgaacccatccatcagctcgagcagcggcggcgacgacgacgacacggccggcgaggtggtcggcggcgtcaccgccaccagccggccgcacgccgccgccgccgcgtccagcccggacacgtccgaggtggcgtcaccgcacgccggcgagctcgccgccgacgccgccaagccgatgagcagacgaacacgcctcggccgctttccgtga
More
|
||||||||||
| CDS seq | atgatcgccatcgtcgcggccatcgtggcgttgctcgtgctcggcgcagtcgccgccgggctgctgtgcttctgctcgcgccgccgtcgccgccgccgccgccgccaaccaacatcgccgggtgatttcctcggacccttaccggtgacatcgcgtcatcaccagcaatcacaattcatcaagccaacagtaacatacccaccacagctgaatgcacactcgccgctgcaaagcagcagcaactccgacccaccgtcaccgctgctgcaaccgtctccacctccaccggcggcgagcggcggcacggtgtcgtacggcgacctggtggcggcgacgaacggcttctccgagggcaacctgctcggggagggcgggttcgggcacgtgtaccgcggcgagctgctcctgcacgacggccggaggcagccggtggccatcaagaagctccggccggggagccggcagggcgagcgcgagttccgcgccgaggtggacatcatcagccgcatccaccaccgcaacctcgtctccctccttcttctcttcttctccggtgcagggagcagccggccgacgctggattggccacagaggtggatgatcgccgtcgggtcggccaaggggttggcctacctgcacgaagactgtcgtccaaagattattcaccgagacatcaaggcagccaacatccttctcgattacaaattcgagccaaaggttgcggactttgggctagccaagatccaaccgggagacgacacacacgtttccacccgcgtgatgggcaccttcggctacttggcgccggagtatgctgctactggcaaagtaaacgacagatcagacgtcttctccttcggtgtcgttcttctggagctgatcaccgggaagaggcctgtcatttcgactgagcccttcaacgacgagactctggtttcttggattgtgagatacttggagggggagctgtcaatagatgacctgaacgccggcgtcgcaccggggcagagctcgctgcgctcgcaggagcactccggcgacatgacggagctggtgcggcggcggctcaggagggtcgcgttcccgccgggcagcggcgtcaccgtcaccggcaccggcgccgtcaccgacagcggctacctgagcgaggcgacgagcgagtacggggtgaacccatccatcagctcgagcagcggcggcgacgacgacgacacggccggcgaggtggtcggcggcgtcaccgccaccagccggccgcacgccgccgccgccgcgtccagcccggacacgtccgaggtggcgtcaccgcacgccggcgagctcgccgccgacgccgccaagccgatgagcagacgaacacgcctcggccgctttccgtga
More
|
||||||||||
| Protein seq | MIAIVAAIVALLVLGAVAAGLLCFCSRRRRRRRRRQPTSPGDFLGPLPVTSRHHQQSQFIKPTVTYPPQLNAHSPLQSSSNSDPPSPLLQPSPPPPAASGGTVSYGDLVAATNGFSEGNLLGEGGFGHVYRGELLLHDGRRQPVAIKKLRPGSRQGEREFRAEVDIISRIHHRNLVSLLLLFFSGAGSSRPTLDWPQRWMIAVGSAKGLAYLHEDCRPKIIHRDIKAANILLDYKFEPKVADFGLAKIQPGDDTHVSTRVMGTFGYLAPEYAATGKVNDRSDVFSFGVVLLELITGKRPVISTEPFNDETLVSWIVRYLEGELSIDDLNAGVAPGQSSLRSQEHSGDMTELVRRRLRRVAFPPGSGVTVTGTGAVTDSGYLSEATSEYGVNPSISSSSGGDDDDTAGEVVGGVTATSRPHAAAAASSPDTSEVASPHAGELAADAAKPMSRRTRLGRFP |
||||||||||
| Function | Proline-rich receptor-like protein kinase PERK1 [UniProtKB/Swiss-Prot:Q9LV48] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0023250 | OsNaBo_05g0023250.01 | Chr05 | 26424980 | 26429139 | + | NAM | ||
| CDS seq | atgatcgccatcgtcgcggccatcgtggcgttgctcgtgctcggcgcagtcgccgccgggctgctgtgcttctgctcgcgccgccgtcgccgccgccgccgccgccaaccaacatcgccgggtgatttcctcggacccttaccggtgacatcgcgtcatcaccagcaatcacaattcatcaagccaacagtaacatacccaccacagctgaatgcacactcgccgctgcaaagcagcagcaactccgacccaccgtcaccgctgctgcaaccgtctccacctccaccggcggcgagcggcggcacggtgtcgtacggcgacctggtggcggcgacgaacggcttctccgagggcaacctgctcggggagggcgggttcgggcacgtgtaccgcggcgagctgctcctgcacgacggccggaggcagccggtggccatcaagaagctccggccggggagccggcagggcgagcgcgagttccgcgccgaggtggacatcatcagccgcatccaccaccgcaacctcgtctccctccttcttctcttcttctccggtgcagggagcagccggccgacgctggattggccacagaggtggatgatcgccgtcgggtcggccaaggggttggcctacctgcacgaagactgtcgtccaaagattattcaccgagacatcaaggcagccaacatccttctcgattacaaattcgagccaaaggttgcggactttgggctagccaagatccaaccgggagacgacacacacgtttccacccgcgtgatgggcaccttcggctacttggcgccggagtatgctgctactggcaaagtaaacgacagatcagacgtcttctccttcggtgtcgttcttctggagctgatcaccgggaagaggcctgtcatttcgactgagcccttcaacgacgagactctggtttcttggattgtgagatacttggagggggagctgtcaatagatgacctgaacgccggcgtcgcaccggggcagagctcgctgcgctcgcaggagcactccggcgacatgacggagctggtgcggcggcggctcaggagggtcgcgttcccgccgggcagcggcgtcaccgtcaccggcaccggcgccgtcaccgacagcggctacctgagcgaggcgacgagcgagtacggggtgaacccatccatcagctcgagcagcggcggcgacgacgacgacacggccggcgaggtggtcggcggcgtcaccgccaccagccggccgcacgccgccgccgccgcgtccagcccggacacgtccgaggtggcgtcaccgcacgccggcgagctcgccgccgacgccgccaagccgatgagcagacgaacacgcctcggccgctttccgtga
More
|
|||||||
| Protein seq | MIAIVAAIVALLVLGAVAAGLLCFCSRRRRRRRRRQPTSPGDFLGPLPVTSRHHQQSQFIKPTVTYPPQLNAHSPLQSSSNSDPPSPLLQPSPPPPAASGGTVSYGDLVAATNGFSEGNLLGEGGFGHVYRGELLLHDGRRQPVAIKKLRPGSRQGEREFRAEVDIISRIHHRNLVSLLLLFFSGAGSSRPTLDWPQRWMIAVGSAKGLAYLHEDCRPKIIHRDIKAANILLDYKFEPKVADFGLAKIQPGDDTHVSTRVMGTFGYLAPEYAATGKVNDRSDVFSFGVVLLELITGKRPVISTEPFNDETLVSWIVRYLEGELSIDDLNAGVAPGQSSLRSQEHSGDMTELVRRRLRRVAFPPGSGVTVTGTGAVTDSGYLSEATSEYGVNPSISSSSGGDDDDTAGEVVGGVTATSRPHAAAAASSPDTSEVASPHAGELAADAAKPMSRRTRLGRFP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0516400 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g44030 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0516400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0023620 | RBH | 0.0 | 0.655451 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0023520 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0023470 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0023450 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0023550 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0396600 | RBH | 0.0948835 | 0.1973065 | 0.151574 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0023130 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0407000 | RBH | 0.287831 | 0.326965 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0023300 | RBH | 0.032104 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0023210 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0023380 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0023400 | RBH | 0.0 | 0.0 | 0.232303 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0023410 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G022870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0032080 | RBH | 0.0 | 7.636705 | 1.101636 |
