Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsARC_05g0023450		OGI:05069210 \| 16/16			ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)			Chr05:26238081-26242240		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		ATGATCGCCATCGTCGCGGCCATCGTGGCGTTGCTCGTGCTCGGCGCAGTCGCCGCCGGGCTGCTGTGCTTCTGCTCGCGCCGCCGTCGCCGCCGCCGCCGCCGCCAACCAACATCGCCGGGTATGTGTTCGACCGCTCACTTTACACCACTAACCTGGCCGGTGCAACGCCGGTGCAGCACCGGCCGGCCACCGGCGTGTCGCGCGGACACGGGTTTGCATTAGCGCAAGTCGTCGGCTCTTCGCCGCCGCCGCGCGGTTACGACGCATCGCGCACGCGCGCGCGCACTTTCGCCATGTCGCGTCGTGCGCGGTGGTGACGTCACGGAGGCAAATGGTGACCGTGACACGTGGTCGTAAAGTTGGATGCACCAAACGGCTTGGGGATATGGAGGGACGATGGACGTGTTGCTCTTGCACAATTCGATCAAACTTGAGCTTTTCTTCAAGTTAGTTAGTGGACGGACCGTGTAGACGAAGTTGGATGCAATCGAGTACTCCCTCCGTCCCAAAAAAAAAACTCACTTATATCCTTTGTGTAAATTTGTTATACTAAAGTTAGGTTAAATTTTTTTATGGAGGGAGTATACACAAAGTGGTTTAGAGGGTTTTAAAGTTAGTGTGTTCTGGATTGAAAATTTCTTGAAGTTAACAAATACTTCATCTTTCACAAAATATAATAACCTACTACAATAGATTAATGAACGTGTTCAGATTTGTAGTAGTAGAAAATATCTCATCCGATTCTAAGTAGATTCAGAAGTAAAATTAGCTCATACACTACTTTATTTCTGCATGAAATTCTTAACATCTCTTATGGAACATTTACCATTGTGTCACCTTACCAGGTGATTTCCTCGGACCCTTACCGGTGACATCGCGTCATCACCAGCAATCACAATTCATCAAGCCAACAGTAACATACCCACCACAGCTGAATGCACACTCGCCGCTGCAAAGCAGCAGCAACTCCGACCCACCGTCACCGCTGCTGCAACCGTCTCCACCTCCACCGGCGGCGAGCGGCGGCACGGTGTCGTACGGCGACCTGGTGGCGGCGACGAACGGCTTCTCCGAGGGCAACCTGCTCGGGGAGGGCGGGTTCGGGCACGTGTACCGCGGCGAGCTGCTCCTGCACGACGGCCGGAGGCAGCCGGTGGCCATCAAGAAGCTCCGGCCGGGGAGCCGGCAGGGCGAGCGCGAGTTCCGCGCCGAGGTGGACATCATCAGCCGCATCCACCACCGCAACCTCGTCTCCCTCGTGGGCTACTGCATCCACGCCGACCACCGCCTCCTCGTCTACGAGTTCGTCCCCAACAAGACGCTGGACTTCCACCTCCACGGTACTTTCTACTCTCTCTCAGTTTCATATTATATGTCATTTTAATTTTTTTTCTTAGTCCAACCTTTCTAAGTTTGATTAAATTTATATAAAAATATAGTAACAACTATCACATCAATTTAGTTTCACTGGATGTATATATTCTGATACTACGTTTGTTTTGTGTTAAAAATATTGCTCAAACCTAAAAAAAATTGACTTGAAAAAAGTCAAAGTGATTTATAATATAAAAATAAAAGGAGTACTGCACTTCTCGTTTTTTAATTTTCGCGTTGTCTGCGCCATTCACGAAATGAGAGCTTCTTCTCTTCTTCTCCGGTGCAGGGAGCAGCCGGCCGACGCTGGATTGGCCACAGAGGTGGATGATCGCCGTCGGGTCGGCCAAGGGGTTGGCCTACCTGCACGAAGACTGTAAGTTACTTGTTTTTTTCTTCTCTCTATCTTGGTCTGAAATTTTCAAGATTTTTTCTTTGATTTAAATTCATGTTGATTGTTGATTGACTTCAGGTCGTCCAAAGATTATTCACCGAGACATCAAGGCAGCCAACATCCTTCTCGATTACAAATTCGAGCCAAAGGTAAACGAAGGATGAGATCATTATCAGTCACACCGGCCGGCAAGAAGATTACCACAAAACAATTGCTATATTTCAGAACGAGCATTTTTGCTGTGCATGCAGGTTGCGGACTTTGGGCTAGCCAAGATCCAACCGGGAGACGACACACACGTTTCCACCCGCGTGATGGGCACCTTCGGGTAACACATTCTTAGCGTGACCCTATTTTTTATTTTTAAGATAATGGAATGAAACAACGTGATTGATCAAAGAGATACAACCAATTATTATAGAATTCACACAAAAAAAACCCCACACAAAGTTCACATTGTGTTTGTGTTTGTGTTTCACGAGAGTTTAGAATAGTTTATCTGATGTGATGGAAATACTTCAAGAAGTTATAAGGGGACATCCTGTACTGTTGATGCAATCGACGCTTGTTTATTTTTTCTTTCTTTCAGCTACTTGGCGCCGGAGTATGCTGCTACTGGCAAAGTAAACGACAGATCAGACGTCTTCTCCTTCGGTGTCGTTCTTCTGGAGCTGATCACCGGGAAGAGGCCTGTCATTTCGACTGAGCCCTTCAACGACGAGACTCTGGTTTCTTGGGTATGTATACCATGCATGAATCTCTATGGTTCTTTCAGTGGTTCAGTTTAGTCCAGCCATCCATAGTTAGTGTTACAACTTACAAATAAAGAACTTGGCGGTACTATGCATGAAAAACATTGCAATTTTCATAGCATTTTTGCATAGTGACAACTGAGAAGCAGTTGTCATGCTAATCTGGGCCGGAGCTATAACAAAATGGAGGGTGATGGCACTTGTTTAATTTACTCTATTTTAGATTGAGTTTAAGTTGATACAGGTGTCTAAGTTTGTATTGAAGGGGGTGCATGGTGAAAATAAATAAGGTATAGCTAAACATTTTTCTTGCATGGGTTCCTGTACACCCCCGTAATATACTCTCGCTCCGCCCCCGCCTGGCTATGACTTTAAAAAACTTTTAGACATGATACTTTGTCGAAACTTAACCCCTGCAGGTCCACTTCTTGCTATCAGATTTTCAACAGACTAGTACAGTGTCATAGTACAATCCAATTCTGACTTCTGACTTCATTTTTTAAAAAATATATATATATTGTGGATTCAGTGACAGCATCGCGTTACATCTCGTTAACTAATGGCTGATTATTCTGTAACTGTAAGGACTACTAAATTTGTTCTTCTTTTATGTTTTGGACGATGCAGGCAAGGCCTCAGCTGACAAAAGCTCTAGAGCAGCATGTCTACGACGATCTGATCGATCCAAAGCTTGACGCCTTGTACGACGCCCACGACATGCATCGGCTGATCTCCTGCGCTGCCGCCGCGGTGCGGCACACGGCACGCTCCCGCCCTCGCATGACCCAGGTGAGCCTCCCTTGGAGAAGAATAAAATGTCATGGTGTTACATATCAACTAAAATGGTTATTATTTTTTTTAAAAAAAATAATTAGATAGAATTGATATATGATATATTACTTCATCAATATATAAATTAAAATTTTGACTTCTACAAGTTGTAATAAAAACAATAACTTGTGAAGTCGAATTGGATTGATATATCTCATGCCAATCTATTTTATCATTTTCTTTAATTATTTTTATATAATTATTTAGTTGATATATAATAAAAAGGTGGATATGGATATTTAATTATTAGAATTATCTCCCTGCTGTGCAATGCAACTTGCGAAACGACCAAAGAAACAAGTTTCTCTTATTGACTTTTTGCCCAAAAACCTGAGTTCTTTTTTTCTGTTCTTGCAATGGACGAGCAGATTGTGAGATACTTGGAGGGGGAGCTGTCAATAGATGACCTGAACGCCGGCGTCGCACCGGGGCAGAGCTCGCTGCGCTCGCAGGAGCACTCCGGCGACATGACGGAGCTGGTGCGGCGGCGGCTCAGGAGGGTCGCGTTCCCGCCGGGCAGCGGCGTCACCGTCACCGGCACCGGCGCCGTCACCGACAGCGGCTACCTGAGCGAGGCGACGAGCGAGTACGGGGTGAACCCATCCATCAGCTCGAGCAGCGGCGGCGACGACGACGACACGGCCGGCGAGGTGGTCGGCGGCGTCACCGCCACCAGCCGGCCGCACGCCGCCGCCGCCGCGTCCAGCCCGGACACGTCCGAGGTGGCGTCACCGCACGCCGGCGAGCTCGCCGCCGACGCCGCCAAGCCGATGAGCAGACGAACACGCCTCGGCCGCTTTCCGTGA More
CDS seq		ATGATCGCCATCGTCGCGGCCATCGTGGCGTTGCTCGTGCTCGGCGCAGTCGCCGCCGGGCTGCTGTGCTTCTGCTCGCGCCGCCGTCGCCGCCGCCGCCGCCGCCAACCAACATCGCCGGGTGATTTCCTCGGACCCTTACCGGTGACATCGCGTCATCACCAGCAATCACAATTCATCAAGCCAACAGTAACATACCCACCACAGCTGAATGCACACTCGCCGCTGCAAAGCAGCAGCAACTCCGACCCACCGTCACCGCTGCTGCAACCGTCTCCACCTCCACCGGCGGCGAGCGGCGGCACGGTGTCGTACGGCGACCTGGTGGCGGCGACGAACGGCTTCTCCGAGGGCAACCTGCTCGGGGAGGGCGGGTTCGGGCACGTGTACCGCGGCGAGCTGCTCCTGCACGACGGCCGGAGGCAGCCGGTGGCCATCAAGAAGCTCCGGCCGGGGAGCCGGCAGGGCGAGCGCGAGTTCCGCGCCGAGGTGGACATCATCAGCCGCATCCACCACCGCAACCTCGTCTCCCTCCTTCTTCTCTTCTTCTCCGGTGCAGGGAGCAGCCGGCCGACGCTGGATTGGCCACAGAGGTGGATGATCGCCGTCGGGTCGGCCAAGGGGTTGGCCTACCTGCACGAAGACTGTCGTCCAAAGATTATTCACCGAGACATCAAGGCAGCCAACATCCTTCTCGATTACAAATTCGAGCCAAAGGTTGCGGACTTTGGGCTAGCCAAGATCCAACCGGGAGACGACACACACGTTTCCACCCGCGTGATGGGCACCTTCGGCTACTTGGCGCCGGAGTATGCTGCTACTGGCAAAGTAAACGACAGATCAGACGTCTTCTCCTTCGGTGTCGTTCTTCTGGAGCTGATCACCGGGAAGAGGCCTGTCATTTCGACTGAGCCCTTCAACGACGAGACTCTGGTTTCTTGGATTGTGAGATACTTGGAGGGGGAGCTGTCAATAGATGACCTGAACGCCGGCGTCGCACCGGGGCAGAGCTCGCTGCGCTCGCAGGAGCACTCCGGCGACATGACGGAGCTGGTGCGGCGGCGGCTCAGGAGGGTCGCGTTCCCGCCGGGCAGCGGCGTCACCGTCACCGGCACCGGCGCCGTCACCGACAGCGGCTACCTGAGCGAGGCGACGAGCGAGTACGGGGTGAACCCATCCATCAGCTCGAGCAGCGGCGGCGACGACGACGACACGGCCGGCGAGGTGGTCGGCGGCGTCACCGCCACCAGCCGGCCGCACGCCGCCGCCGCCGCGTCCAGCCCGGACACGTCCGAGGTGGCGTCACCGCACGCCGGCGAGCTCGCCGCCGACGCCGCCAAGCCGATGAGCAGACGAACACGCCTCGGCCGCTTTCCGTGA More
Protein seq		MIAIVAAIVALLVLGAVAAGLLCFCSRRRRRRRRRQPTSPGDFLGPLPVTSRHHQQSQFIKPTVTYPPQLNAHSPLQSSSNSDPPSPLLQPSPPPPAASGGTVSYGDLVAATNGFSEGNLLGEGGFGHVYRGELLLHDGRRQPVAIKKLRPGSRQGEREFRAEVDIISRIHHRNLVSLLLLFFSGAGSSRPTLDWPQRWMIAVGSAKGLAYLHEDCRPKIIHRDIKAANILLDYKFEPKVADFGLAKIQPGDDTHVSTRVMGTFGYLAPEYAATGKVNDRSDVFSFGVVLLELITGKRPVISTEPFNDETLVSWIVRYLEGELSIDDLNAGVAPGQSSLRSQEHSGDMTELVRRRLRRVAFPPGSGVTVTGTGAVTDSGYLSEATSEYGVNPSISSSSGGDDDDTAGEVVGGVTATSRPHAAAAASSPDTSEVASPHAGELAADAAKPMSRRTRLGRFP
Function		Proline-rich receptor-like protein kinase PERK1 [UniProtKB/Swiss-Prot:Q9LV48]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsARC_05g0023450	OsARC_05g0023450.01	Chr05	26238081	26242240	+	NAM
CDS seq	ATGATCGCCATCGTCGCGGCCATCGTGGCGTTGCTCGTGCTCGGCGCAGTCGCCGCCGGGCTGCTGTGCTTCTGCTCGCGCCGCCGTCGCCGCCGCCGCCGCCGCCAACCAACATCGCCGGGTGATTTCCTCGGACCCTTACCGGTGACATCGCGTCATCACCAGCAATCACAATTCATCAAGCCAACAGTAACATACCCACCACAGCTGAATGCACACTCGCCGCTGCAAAGCAGCAGCAACTCCGACCCACCGTCACCGCTGCTGCAACCGTCTCCACCTCCACCGGCGGCGAGCGGCGGCACGGTGTCGTACGGCGACCTGGTGGCGGCGACGAACGGCTTCTCCGAGGGCAACCTGCTCGGGGAGGGCGGGTTCGGGCACGTGTACCGCGGCGAGCTGCTCCTGCACGACGGCCGGAGGCAGCCGGTGGCCATCAAGAAGCTCCGGCCGGGGAGCCGGCAGGGCGAGCGCGAGTTCCGCGCCGAGGTGGACATCATCAGCCGCATCCACCACCGCAACCTCGTCTCCCTCCTTCTTCTCTTCTTCTCCGGTGCAGGGAGCAGCCGGCCGACGCTGGATTGGCCACAGAGGTGGATGATCGCCGTCGGGTCGGCCAAGGGGTTGGCCTACCTGCACGAAGACTGTCGTCCAAAGATTATTCACCGAGACATCAAGGCAGCCAACATCCTTCTCGATTACAAATTCGAGCCAAAGGTTGCGGACTTTGGGCTAGCCAAGATCCAACCGGGAGACGACACACACGTTTCCACCCGCGTGATGGGCACCTTCGGCTACTTGGCGCCGGAGTATGCTGCTACTGGCAAAGTAAACGACAGATCAGACGTCTTCTCCTTCGGTGTCGTTCTTCTGGAGCTGATCACCGGGAAGAGGCCTGTCATTTCGACTGAGCCCTTCAACGACGAGACTCTGGTTTCTTGGATTGTGAGATACTTGGAGGGGGAGCTGTCAATAGATGACCTGAACGCCGGCGTCGCACCGGGGCAGAGCTCGCTGCGCTCGCAGGAGCACTCCGGCGACATGACGGAGCTGGTGCGGCGGCGGCTCAGGAGGGTCGCGTTCCCGCCGGGCAGCGGCGTCACCGTCACCGGCACCGGCGCCGTCACCGACAGCGGCTACCTGAGCGAGGCGACGAGCGAGTACGGGGTGAACCCATCCATCAGCTCGAGCAGCGGCGGCGACGACGACGACACGGCCGGCGAGGTGGTCGGCGGCGTCACCGCCACCAGCCGGCCGCACGCCGCCGCCGCCGCGTCCAGCCCGGACACGTCCGAGGTGGCGTCACCGCACGCCGGCGAGCTCGCCGCCGACGCCGCCAAGCCGATGAGCAGACGAACACGCCTCGGCCGCTTTCCGTGA More
Protein seq	MIAIVAAIVALLVLGAVAAGLLCFCSRRRRRRRRRQPTSPGDFLGPLPVTSRHHQQSQFIKPTVTYPPQLNAHSPLQSSSNSDPPSPLLQPSPPPPAASGGTVSYGDLVAATNGFSEGNLLGEGGFGHVYRGELLLHDGRRQPVAIKKLRPGSRQGEREFRAEVDIISRIHHRNLVSLLLLFFSGAGSSRPTLDWPQRWMIAVGSAKGLAYLHEDCRPKIIHRDIKAANILLDYKFEPKVADFGLAKIQPGDDTHVSTRVMGTFGYLAPEYAATGKVNDRSDVFSFGVVLLELITGKRPVISTEPFNDETLVSWIVRYLEGELSIDDLNAGVAPGQSSLRSQEHSGDMTELVRRRLRRVAFPPGSGVTVTGTGAVTDSGYLSEATSEYGVNPSISSSSGGDDDDTAGEVVGGVTATSRPHAAAAASSPDTSEVASPHAGELAADAAKPMSRRTRLGRFP More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_05g0516400	RBH	0.000000	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os05g44030	RBH	0.000000	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os05g0516400	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_05g0023620	RBH	0.0	0.655451	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_05g0023520	RBH	0.0	0.0	0.000000
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_05g0023470	RBH	0.0	0.0	0.000000
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_01g0032930	RBH	0.089179	0.794061	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_05g0023550	RBH	0.0	0.0	0.000000
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_05G0396600	RBH	0.0948835	0.1973065	0.151574
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_05g0023130	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_05G0407000	RBH	0.287831	0.326965	0
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_05g0023300	RBH	0.032104	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_05g0023210	RBH	0.000000	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_05g0023380	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_05g0023400	RBH	0.0	0.0	0.232303
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_05g0023410	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_05G022870	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_05g0023250	RBH	0.0	0.0	0.000000

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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