Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsNaBo_05g0009420		OGI:05025760 \| 11/16			NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)			Chr05:9689883-9696818		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		atggcaatgatggatggcaaccacataatgcctatcagtggccaaggtggcacatgggcattgggagccgtgcagtggtgccgttggcaggtgcggcctaggtgggcattggtattctcgagcctacaagccacgcctaagttcagttgtgccggtgtcgcgagtggtggtgtcagcggtggtttaaagcaaggacAtaTtttttaagatttgaagcttagtattctagcTttcttttcagtcccctagcatttttcTtgttttttCTAtactagaaaaggtacctgtgcgttgcaacgggtagagccaaTttaatttgtacatatAtgtcagatagataggggaagacatataggtcccactattattttgaaaagTtttttctgccgacttagcataaaccattgtctaaaccactaatggagctaatttgcaccggTtttttaagttgagggaagcattataCccggttctgggttgagagatgccatttgatcataggcaaaataggagataggtaaaatagacttattccttcctctcaagtttacagcccatatatgttagttcagccagctttctacaacccaattaaatttgagaggatccattaTatgccactgactttgtcacAtgtttacgatttgtctctgacTttgtcatgttctataatatgccatcgacttttgcttaacttctacaatttaccatcaccgtctggttagcctccgttagcactgtacatttttttccaaatgaccaaaatacccctaggacaaaaacttccaaaatttggataaaattatcaaaatatcatattataaacataagaatgtaaacatccAaattttggccAaaaacataaaatatgataTttcagaatttttatccAaattttgaaagttttgccacagggatattttggtcaTtttgacgatggtaaatCgtagaagttaagaaaaagtcaatggCatattgtagaaagtgataaagtcagtggcaaatcatagatgtgcgacaaagtcaatGgcatataatggattctctcattaaaTttgcactaataaagcatgaaaataatccttttcTttacagctcgattcaatcttcaTtgtcagtccgagcgagtgaacttcggctgaattgtgccgaactgagctgatacgacaatggaaacaaatcggacaacgcacaaaattttcaggcaaaaacaccttaaactttcataatagtagagatagagatagagatagagattgtgaggcgtggggtttaaatactcccgatcgtaactttggctgcatacatccaactatggacaagcccatCcaaatttcacttcttttgttttcctctgaaaccacaccagtccgtcccaaaTttggtatgccggatgaaaaccgggtatcctaTtttttttgggtgaatcggcctgattttgtacgttctttgggcaaaccaaatgatTtgggagttagggtaaaaagtgaatagttctCaacaatccaagggaaaaaatagaattatttcatttacttatcaacattgattactttcTtgtttttgcaggagggtaacaaatttgagcgttgttggcgaaatacctttggagctgcagaatttcacctatatgctggacctgtatggtatctatgccTtatcatcttaatcctgataatcaatgttaattttgcaggaaatataaattcaactccTtgttttgaatactcaactgtcgacatcctggtgaaaaccagcaaatagtagtcgggaatgcAagatttttgtgttagctaactgacatgatgtttcTtggtgttgttgcaggaacCTtggctataattacttgactggtgccgtgccAtcattctttggaaagtttactttcatgaaatatttgtaggagctatacgtcaatttctcaaattcatgtagcatctatagattggtgttttgtgttaactatttttcatcatttAaagggcttttcctttcAatgcactgtctggaccgcTtccaaaggaacttggAaacctcaccaatctcctctcgctgtaaggacttgtttttcatggcagatcaatcttcaaatataaTtttgcgactgcctgaactAaaataattatactagaaacgattaatcacaTtttttctcgacaataaatttactgtAaattcagaAGtctatatgttagtcctgtcggcatatcttagcctgtaagtttcaagttgtacttcacatgttcaaggaaaattgacctgaGgaaggcttgaaaatttattatgtaggtcagatggctcatcaggttaaactgagcccctttccagctattagaggaatatagctAatttattgtcatgaaatattcgttttgattcaggggcattagctttAacaattttagcggtcaacttcctgaagAactgggcaatatgaccaatcttcagcagatgtaagatgcaccatttctaaTatccaattgctatttatgaataactAaattttgttatGggcagatatattgttgtacaggataacacttcaatctttcaataacaggtacatcgatagttgtggattcagtGgtccGttcccttcaacattctcaaaacttcagaacctgaagatcttgtacggtcaataccatagccttagacattatatatgttcgtcatgttttcatgctaaatgtctaacatttggatgcggatgcaggaggtcatcagataacgattttacagggaaaatacctgattatttGgggatcatgCctcctAAGttggaagatatgtaagattaattatataaacTtgttgacataccactcagtgtatcttaTtcagagacaaatggAattgttcaacataaagtttctgcatgtgtttttccatctgaactcaaacAatagaatttttcaccttccagtctgcatggaattagagtaatctgcatgccatgttgatacaaacaactttgacttaaaaatgctcatacatggagcttacttttctctattagaatgagcttcgcatgtctgtacttttctgaaagtgtgagcttgtagggctttccaaggaaattcttttgaaggaccgatcccaccaagtttagctaatctaaCcaagttaaccaacTtgtaagtacattgttttgggtatcattgattcgatgatggctgagagcctgacaaggtcaagctagataactgatttgtaaaatatacaaatgagcagacggattggtgataTtgtaaatgggagctcttcattggcctttatcagtaacctcacatctttgagcaacctgtatgtgatgcttttacacatAgagcttaTAGtattcacaaagtttcaagttactgaaatttgatctttttgtcacagaatattaaggaactgcaagatatctggcaatcttgcaccagtagatttttcgaagtttagagttttaaccctgctgtgagttttcactcttagcattgctacatgatttattgtgcttttaatcAtttcttcagattgtgaagcatctcttgatgtaaaaaatctgtcatgaatcacagggacttgagttttaacaatatcagaggccaaattcctcaaaccattctgaatatgacaaatcttgaatttCggtaagaatgttttcattgccttaattaagtttacacaaataaaagctgagctcatcattatgttccatcatcttgtaccatatcaggtttcttgggaacaacagctttacaggaagtcttccagatgctataagcccatccttgaaagcgatgtatgtcAaaaaAGACCAAAATAGCACCATAGGTCAAATTATTTTCATAATACAATGTACTAATTTCATATGTACTGACCGTGGACTGTTTGTAGCGATTTTTCCTACAACCAACTCACCGGAGGCTTGCCTTCTTGGGCTACCCAGAACAACTTCCAATTGTGAGTATGAAATTCTGAAGTTTGGATTGAAGAGTAATAGAATTAGATATTCTAATCTTTTATTTTGTACTAGAAATTTGGTGGCAAACAACTTTGAACTTGGTACCATAGGCCACAGGTACTTATGACATTTAGTTATAATTCTGCAAGAGGTTAACCATCAAAAGAATGTTACTCACAACTTTTATTTTTTTAATTAAAATTGTCCACAGCACTTTACCTTCAGGACTAAACTGCCTCCAGCAAGACACCCCTTGTTTCCGTGGATCTGCAGAATGTATATTTCTTTCTCTTCATCTACAGTAGTAGTTACCATGAGCATGGAAATTTGAATGATTGATTTTACAAATCTTAATTCCAGATTATTCCTTTGCGGTTGACTGCGGCAATAATAGAACGACTAGAGGCTTAGATGGAACTATTTACGAACCAGATGCTGCAAACCTTGGGGCTGCATCATATTATGTTACTAGTGACACAAGATGGGGTGTAAGCAATGTCGGGAACTACTTTCTGGCTACAGATGGAGTGAACATAATAAATAGTCCACAGAAAATTCAGAATGTCCTTGATTCAAGATTATTTGAAACTGCAAGGATGTCGGCGTCGTCAGTGAGGTATTATGGCCTTGGACTCGAGAATGGAAATTACACTGTTCTGCTTCAATTTGCCGAGTTTGCTTATCCAGACTCGCAGACGTGGCTAAGCTTAGGAAGGAGAGTTTTTGACATATATGTCCAGGTAaaaattgactggcttgtttactgaatttttttattctttatctgaaccagttgcaatttgcctagggtgatctaaaAGgaaagaattttgatAtaaggaagatggcgggtggaaaatcTtttactgcagtcaacagaagttatactgcaagagtgtccaaaaATttCcttgagattcatctcttttgggctggtaagggaacttgttgtgtacctactcaaggttactatgggccgatgatctcagcattaagtgtcacaccaagtaagcgcaaccattatgttatcttcaacaaggattatatggaatctaataagatcaTtttttatacagattttactccaacagttcgcaatggTgtaccaaaaaGgagaagtaaagcaggtgcaattgttggaataacaattggtgcattagtgttaggagtagtatccttatttggaatatttttgttggtaaagaagagaagaCAATAGCACAACAGCAAGAAGGTATTAATTATTTTTATAGTAATTCAGTCTAAAACTATTTAGATGATTTACTCTTTCTCATCTGACCATGAAAAACAAGCAGAACTGTACAACCTTGCTGGACAACCCGATGTCTTCAGTAACACTGAACTCAAGCTAGCTACCGACAATTTCAGTTATCAAAACATCATTGGGGAAGGCGGATATGGGCCAGTGTATAAGGTTTTCTATTATCTGTTACTAATAATGTGCAAAAAGAGACGAGTATTTATTTCATTTTCTATTAAGACCAGAATTTTGGTAATCTTTATGTGCATGTTCAAAATATACATGTAATAGGTTTCTTCATTTGGCAGGGTAAACTACCTGATGGAAGAGTTATAGCAGTGAAACAACTTTCTGAAACATCTCATCAAGGCAAAAGCCAATTTGTGACAGAGGTAGCAACAATCTCTGCTGTGCAACACCGGAATCTTGTTAAATTGCATGGGTGCTGCATTGATAGTAAAACACCCTTGTTAGTTTATGAGTACCTTGAAAATGGAAGCCTGGATCGAGCAATATTTGGTGAGTTCAATGATGCAAATTTCCAGCATATGACATTATGCTTGGTTGATTTCACTAATACAATTTTGCTTCACTAAGACAAGACAATTTGTTTTTTTTTGTATTTTGCCAACAACTGAGTTATTTCTGCTTGCACAGGACATAGTATCTTAAAACTAGATTGGGCAACGCGATTTGATATCATTTTAGGCATAGCAAGAGGCCTAACATATCTTCATGAGGAGTCAAGTGTCCGCATTGTGCATAGGGACATCAAAGCCAGCAATATACTACTTGACACTGACCTCACCcccaaagatctctgactttggacttgccaaactatatgatgagaagaaaactcatgtgagcacaagaattgcgggcacaatgtaagaacatttaaccaTttctcttcTtaaaaccgcaatatcaatatgattgctactattaaTttatcttatctttgttaaggggctacctagctcctgagtatgcaatgagaggtcatttgtcagagaaggccgatgtttttgcaTttggagtacttatgttggagactgttgctggtcgatcgaatacaaacaactcccttgaggaaagcaagatatatctgttggagtgggtaagctgatcaatgatctttccatcccagaaaacactagttcgttcgtgTttattgtcttttgctcactgaacctatgtttgtatataggcctGgggTttgtatgaaatggggcaagctctgcgcgtagtcgatccatgtcttaaggaatttgatgagaaggaagctttcagagtcatctgtattgctctcctttgtacgcagggctcaccgcaccagcggccgccaatgtcaagggttgtggcaatgctcaccggagatgTtgatgtggctgaggtggtcatgaagccgagctatatcaCcgagtggcagctcagggatggtgggagcagtagctacaccactagtagctatgcaggatctagtaaccctgagtttagtaggcagagggagaccaaccctctcgcacagtcatcaccaacgatcaccaaagctagtctggtgggaaggtgagaattgaaagttgaattgctgcaggtgattgacccttggtttgcagtgacaatattatacgttggtgtgaattggagaaaataacataattacttactctggtttcttgtctgaaaatAaaagctttcctcctatAatttttgaaaggtg More
CDS seq		atggcaatgatggatggcaaccacataatgcctatcagtggccaaggtggcacatgggcattgggagccgtgcagtggtgccgttggcaggagggtaacaaatttgagcgttgttggcgaaatacctttggagctgcagaatttcacctatatgctggacctgtatggaacCTtggctataattacttgactggtgccgtgccAtcattctttggaaagtttactttcatgaaatatttggcttttcctttcAatgcactgtctggaccgcTtccaaaggaacttggAaacctcaccaatctcctctcgctgggcattagctttAacaattttagcggtcaacttcctgaagAactgggcaatatgaccaatcttcagcagatgtacatcgatagttgtggattcagtGgtccGttcccttcaacattctcaaaacttcagaacctgaagatcttgaggtcatcagataacgattttacagggaaaatacctgattatttGgggatcatgCctcctAAGttggaagatatggctttccaaggaaattcttttgaaggaccgatcccaccaagtttagctaatctaaCcaagttaaccaacTtacggattggtgataTtgtaaatgggagctcttcattggcctttatcagtaacctcacatctttgagcaacctaatattaaggaactgcaagatatctggcaatcttgcaccagtagatttttcgaagtttagagttttaaccctgctggacttgagttttaacaatatcagaggccaaattcctcaaaccattctgaatatgacaaatcttgaatttCgCGATTTTTCCTACAACCAACTCACCGGAGGCTTGCCTTCTTGGGCTACCCAGAACAACTTCCAATTAAATTTGGTGGCAAACAACTTTGAACTTGGTACCATAGGCCACAGCACTTTACCTTCAGGACTAAACTGCCTCCAGCAAGACACCCCTTGTTTCCGTGGATCTGCAGAATATTATTCCTTTGCGGTTGACTGCGGCAATAATAGAACGACTAGAGGCTTAGATGGAACTATTTACGAACCAGATGCTGCAAACCTTGGGGCTGCATCATATTATGTTACTAGTGACACAAGATGGGGTGTAAGCAATGTCGGGAACTACTTTCTGGCTACAGATGGAGTGAACATAATAAATAGTCCACAGAAAATTCAGAATGTCCTTGATTCAAGATTATTTGAAACTGCAAGGATGTCGGCGTCGTCAGTGAGGTATTATGGCCTTGGACTCGAGAATGGAAATTACACTGTTCTGCTTCAATTTGCCGAGTTTGCTTATCCAGACTCGCAGACGTGGCTAAGCTTAGGAAGGAGAGTTTTTGACATATATGTCCAGggtgatctaaaAGgaaagaattttgatAtaaggaagatggcgggtggaaaatcTtttactgcagtcaacagaagttatactgcaagagtgtccaaaaATttCcttgagattcatctcttttgggctgGGACATCAAAGCCAGCAATATACTACTTGACACTGACCTCACCcccaaagatctctgactttggacttgccaaactatatgatgagaagaaaactcatgtgagcacaagaattgcgggcacaatgggctacctagctcctgagtatgcaatgagaggtcatttgtcagagaaggccgatgtttttgcaTttggagtacttatgttggagactgttgctggtcgatcgaatacaaacaactcccttgaggaaagcaagatatatctgttggagtgggcctGgggTttgtatgaaatggggcaagctctgcgcgtagtcgatccatgtcttaaggaatttgatgagaaggaagctttcagagtcatctgtattgctctcctttgtacgcagggctcaccgcaccagcggccgccaatgtcaagggttgtggcaatgctcaccggagatgTtgatgtggctgaggtggtcatgaagccgagctatatcaCcgagtggcagctcagggatggtgggagcagtagctacaccactagtagctatgcaggatctagtaaccctgagtttagtaggcagagggagaccaaccctctcgcacagtcatcaccaacgatcaccaaagctagtctggtgggaaggtga More
Protein seq		MAMMDGNHIMPISGQGGTWALGAVQWCRWQEGNKFERCWRNTFGAAEFHLYAGPVWNLGYNYLTGAVPSFFGKFTFMKYLAFPFNALSGPLPKELGNLTNLLSLGISFNNFSGQLPEELGNMTNLQQMYIDSCGFSGPFPSTFSKLQNLKILRSSDNDFTGKIPDYLGIMPPKLEDMAFQGNSFEGPIPPSLANLTKLTNLRIGDIVNGSSSLAFISNLTSLSNLILRNCKISGNLAPVDFSKFRVLTLLDLSFNNIRGQIPQTILNMTNLEFRDFSYNQLTGGLPSWATQNNFQLNLVANNFELGTIGHSTLPSGLNCLQQDTPCFRGSAEYYSFAVDCGNNRTTRGLDGTIYEPDAANLGAASYYVTSDTRWGVSNVGNYFLATDGVNIINSPQKIQNVLDSRLFETARMSASSVRYYGLGLENGNYTVLLQFAEFAYPDSQTWLSLGRRVFDIYVQGDLKGKNFDIRKMAGGKSFTAVNRSYTARVSKNFLEIHLFWAGTSKPAIYYLTLTSPPKISDFGLAKLYDEKKTHVSTRIAGTMGYLAPEYAMRGHLSEKADVFAFGVLMLETVAGRSNTNNSLEESKIYLLEWAWGLYEMGQALRVVDPCLKEFDEKEAFRVICIALLCTQGSPHQRPPMSRVVAMLTGDVDVAEVVMKPSYITEWQLRDGGSSSYTTSSYAGSSNPEFSRQRETNPLAQSSPTITKASLVGR
Function		Probable LRR receptor-like serine/threonine-protein kinase At1g56130 [UniProtKB/Swiss-Prot:C0LGH2]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNaBo_05g0009420	OsNaBo_05g0009420.01	Chr05	9689883	9696668	+	NAM
CDS seq	atggcaatgatggatggcaaccacataatgcctatcagtggccaaggtggcacatgggcattgggagccgtgcagtggtgccgttggcaggagggtaacaaatttgagcgttgttggcgaaatacctttggagctgcagaatttcacctatatgctggacctgtatggaacCTtggctataattacttgactggtgccgtgccAtcattctttggaaagtttactttcatgaaatatttggcttttcctttcAatgcactgtctggaccgcTtccaaaggaacttggAaacctcaccaatctcctctcgctgggcattagctttAacaattttagcggtcaacttcctgaagAactgggcaatatgaccaatcttcagcagatgtacatcgatagttgtggattcagtGgtccGttcccttcaacattctcaaaacttcagaacctgaagatcttgaggtcatcagataacgattttacagggaaaatacctgattatttGgggatcatgCctcctAAGttggaagatatggctttccaaggaaattcttttgaaggaccgatcccaccaagtttagctaatctaaCcaagttaaccaacTtacggattggtgataTtgtaaatgggagctcttcattggcctttatcagtaacctcacatctttgagcaacctaatattaaggaactgcaagatatctggcaatcttgcaccagtagatttttcgaagtttagagttttaaccctgctggacttgagttttaacaatatcagaggccaaattcctcaaaccattctgaatatgacaaatcttgaatttCgCGATTTTTCCTACAACCAACTCACCGGAGGCTTGCCTTCTTGGGCTACCCAGAACAACTTCCAATTAAATTTGGTGGCAAACAACTTTGAACTTGGTACCATAGGCCACAGCACTTTACCTTCAGGACTAAACTGCCTCCAGCAAGACACCCCTTGTTTCCGTGGATCTGCAGAATATTATTCCTTTGCGGTTGACTGCGGCAATAATAGAACGACTAGAGGCTTAGATGGAACTATTTACGAACCAGATGCTGCAAACCTTGGGGCTGCATCATATTATGTTACTAGTGACACAAGATGGGGTGTAAGCAATGTCGGGAACTACTTTCTGGCTACAGATGGAGTGAACATAATAAATAGTCCACAGAAAATTCAGAATGTCCTTGATTCAAGATTATTTGAAACTGCAAGGATGTCGGCGTCGTCAGTGAGGTATTATGGCCTTGGACTCGAGAATGGAAATTACACTGTTCTGCTTCAATTTGCCGAGTTTGCTTATCCAGACTCGCAGACGTGGCTAAGCTTAGGAAGGAGAGTTTTTGACATATATGTCCAGggtgatctaaaAGgaaagaattttgatAtaaggaagatggcgggtggaaaatcTtttactgcagtcaacagaagttatactgcaagagtgtccaaaaATttCcttgagattcatctcttttgggctgGGACATCAAAGCCAGCAATATACTACTTGACACTGACCTCACCcccaaagatctctgactttggacttgccaaactatatgatgagaagaaaactcatgtgagcacaagaattgcgggcacaatgggctacctagctcctgagtatgcaatgagaggtcatttgtcagagaaggccgatgtttttgcaTttggagtacttatgttggagactgttgctggtcgatcgaatacaaacaactcccttgaggaaagcaagatatatctgttggagtgggcctGgggTttgtatgaaatggggcaagctctgcgcgtagtcgatccatgtcttaaggaatttgatgagaaggaagctttcagagtcatctgtattgctctcctttgtacgcagggctcaccgcaccagcggccgccaatgtcaagggttgtggcaatgctcaccggagatgTtgatgtggctgaggtggtcatgaagccgagctatatcaCcgagtggcagctcagggatggtgggagcagtagctacaccactagtagctatgcaggatctagtaaccctgagtttagtaggcagagggagaccaaccctctcgcacagtcatcaccaacgatcaccaaagctagtctggtgggaaggtga More
Protein seq	MAMMDGNHIMPISGQGGTWALGAVQWCRWQEGNKFERCWRNTFGAAEFHLYAGPVWNLGYNYLTGAVPSFFGKFTFMKYLAFPFNALSGPLPKELGNLTNLLSLGISFNNFSGQLPEELGNMTNLQQMYIDSCGFSGPFPSTFSKLQNLKILRSSDNDFTGKIPDYLGIMPPKLEDMAFQGNSFEGPIPPSLANLTKLTNLRIGDIVNGSSSLAFISNLTSLSNLILRNCKISGNLAPVDFSKFRVLTLLDLSFNNIRGQIPQTILNMTNLEFRDFSYNQLTGGLPSWATQNNFQLNLVANNFELGTIGHSTLPSGLNCLQQDTPCFRGSAEYYSFAVDCGNNRTTRGLDGTIYEPDAANLGAASYYVTSDTRWGVSNVGNYFLATDGVNIINSPQKIQNVLDSRLFETARMSASSVRYYGLGLENGNYTVLLQFAEFAYPDSQTWLSLGRRVFDIYVQGDLKGKNFDIRKMAGGKSFTAVNRSYTARVSKNFLEIHLFWAGTSKPAIYYLTLTSPPKISDFGLAKLYDEKKTHVSTRIAGTMGYLAPEYAMRGHLSEKADVFAFGVLMLETVAGRSNTNNSLEESKIYLLEWAWGLYEMGQALRVVDPCLKEFDEKEAFRVICIALLCTQGSPHQRPPMSRVVAMLTGDVDVAEVVMKPSYITEWQLRDGGSSSYTTSSYAGSSNPEFSRQRETNPLAQSSPTITKASLVGR More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNaBo_05g0009420	OsNaBo_05g0009420.02	Chr05	9689883	9694437	+	NAM
CDS seq	atggcaatgatggatggcaaccacataatgcctatcagtggccaaggtggcacatgggcattgggagccgtgcagtggtgccgttggcaggagggtaacaaatttgagcgttgttggcgaaatacctttggagctgcagaatttcacctatatgctggacctgtatggaacCTtggctataattacttgactggtgccgtgccAtcattctttggaaagtttactttcatgaaatatttgtag More
Protein seq	MAMMDGNHIMPISGQGGTWALGAVQWCRWQEGNKFERCWRNTFGAAEFHLYAGPVWNLGYNYLTGAVPSFFGKFTFMKYL

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNaBo_05g0009420	OsNaBo_05g0009420.03	Chr05	9692071	9696668	+	NAM
CDS seq	atgttagtcctgtcggcatatcttagcctgggcattagctttAacaattttagcggtcaacttcctgaagAactgggcaatatgaccaatcttcagcagatgtacatcgatagttgtggattcagtGgtccGttcccttcaacattctcaaaacttcagaacctgaagatcttgaggtcatcagataacgattttacagggaaaatacctgattatttGgggatcatgCctcctAAGttggaagatatggctttccaaggaaattcttttgaaggaccgatcccaccaagtttagctaatctaaCcaagttaaccaacTtacggattggtgataTtgtaaatgggagctcttcattggcctttatcagtaacctcacatctttgagcaacctaatattaaggaactgcaagatatctggcaatcttgcaccagtagatttttcgaagtttagagttttaaccctgctggacttgagttttaacaatatcagaggccaaattcctcaaaccattctgaatatgacaaatcttgaatttCgCGATTTTTCCTACAACCAACTCACCGGAGGCTTGCCTTCTTGGGCTACCCAGAACAACTTCCAATTAAATTTGGTGGCAAACAACTTTGAACTTGGTACCATAGGCCACAGCACTTTACCTTCAGGACTAAACTGCCTCCAGCAAGACACCCCTTGTTTCCGTGGATCTGCAGAATATTATTCCTTTGCGGTTGACTGCGGCAATAATAGAACGACTAGAGGCTTAGATGGAACTATTTACGAACCAGATGCTGCAAACCTTGGGGCTGCATCATATTATGTTACTAGTGACACAAGATGGGGTGTAAGCAATGTCGGGAACTACTTTCTGGCTACAGATGGAGTGAACATAATAAATAGTCCACAGAAAATTCAGAATGTCCTTGATTCAAGATTATTTGAAACTGCAAGGATGTCGGCGTCGTCAGTGAGGTATTATGGCCTTGGACTCGAGAATGGAAATTACACTGTTCTGCTTCAATTTGCCGAGTTTGCTTATCCAGACTCGCAGACGTGGCTAAGCTTAGGAAGGAGAGTTTTTGACATATATGTCCAGggtgatctaaaAGgaaagaattttgatAtaaggaagatggcgggtggaaaatcTtttactgcagtcaacagaagttatactgcaagagtgtccaaaaATttCcttgagattcatctcttttgggctgGGACATCAAAGCCAGCAATATACTACTTGACACTGACCTCACCcccaaagatctctgactttggacttgccaaactatatgatgagaagaaaactcatgtgagcacaagaattgcgggcacaatgggctacctagctcctgagtatgcaatgagaggtcatttgtcagagaaggccgatgtttttgcaTttggagtacttatgttggagactgttgctggtcgatcgaatacaaacaactcccttgaggaaagcaagatatatctgttggagtgggcctGgggTttgtatgaaatggggcaagctctgcgcgtagtcgatccatgtcttaaggaatttgatgagaaggaagctttcagagtcatctgtattgctctcctttgtacgcagggctcaccgcaccagcggccgccaatgtcaagggttgtggcaatgctcaccggagatgTtgatgtggctgaggtggtcatgaagccgagctatatcaCcgagtggcagctcagggatggtgggagcagtagctacaccactagtagctatgcaggatctagtaaccctgagtttagtaggcagagggagaccaaccctctcgcacagtcatcaccaacgatcaccaaagctagtctggtgggaaggtga More
Protein seq	MLVLSAYLSLGISFNNFSGQLPEELGNMTNLQQMYIDSCGFSGPFPSTFSKLQNLKILRSSDNDFTGKIPDYLGIMPPKLEDMAFQGNSFEGPIPPSLANLTKLTNLRIGDIVNGSSSLAFISNLTSLSNLILRNCKISGNLAPVDFSKFRVLTLLDLSFNNIRGQIPQTILNMTNLEFRDFSYNQLTGGLPSWATQNNFQLNLVANNFELGTIGHSTLPSGLNCLQQDTPCFRGSAEYYSFAVDCGNNRTTRGLDGTIYEPDAANLGAASYYVTSDTRWGVSNVGNYFLATDGVNIINSPQKIQNVLDSRLFETARMSASSVRYYGLGLENGNYTVLLQFAEFAYPDSQTWLSLGRRVFDIYVQGDLKGKNFDIRKMAGGKSFTAVNRSYTARVSKNFLEIHLFWAGTSKPAIYYLTLTSPPKISDFGLAKLYDEKKTHVSTRIAGTMGYLAPEYAMRGHLSEKADVFAFGVLMLETVAGRSNTNNSLEESKIYLLEWAWGLYEMGQALRVVDPCLKEFDEKEAFRVICIALLCTQGSPHQRPPMSRVVAMLTGDVDVAEVVMKPSYITEWQLRDGGSSSYTTSSYAGSSNPEFSRQRETNPLAQSSPTITKASLVGR More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNaBo_05g0009420	OsNaBo_05g0009420.04	Chr05	9695181	9696818	+	IsoSeq
CDS seq	atggtgggagcagtagctacaccactagtagctatgcaggatctagtaaccctgagtttagtaggcagagggagaccaaccctctcgcacagtcatcaccaacgatcaccaaagctagtctggtgggaaggtgag
Protein seq	MVGAVATPLVAMQDLVTLSLVGRGRPTLSHSHHQRSPKLVWWEGE

Event Type	Chromosome	Start	End	Strand	Alternative mRNAs	Total mRNAs	Source
RI	Chr05	9691710	9691936	+	OsNaBo_05g0009420.02	OsNaBo_05g0009420.01,OsNaBo_05g0009420.02	All
A5	Chr05	9693491	9693765	+	OsNaBo_05g0009420.01,OsNaBo_05g0009420.03	OsNaBo_05g0009420.02,OsNaBo_05g0009420.03,OsNaBo_05g0009420.01	All

Expression

	Leaf	Root	Panicle
FPKM	0.0	101.883118	0.0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_05g0258400	RBH	0.000000	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os05g16930	RBH	0.000000	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os05g0258400	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_05g0009320	SBH	0.057884	41.110802	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_05g0009360	SBH	0.0	13.674270	0.000000
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_05g0009260	SBH	0.246522	13.633492	0.000000
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_05g0009350	SBH	0.0	0.165039	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_05g0009420	SBH	0.000000	33.190304	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_05G0143400	RBH	1.3223145	42.2957265	0.008113
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_05g0009290	SBH	0.000000	0.882620	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_05G0140400	SBH	0.9392435	6.2197055	0.004043
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_05g0009260	SBH	0.0	0.619669	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_05g0009210	SBH	0.0	13.107274	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_05g0009310	SBH	0.836862	30.956285	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_05g0009360	SBH	0.144720	5.697697	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_05g0009330	SBH	0.055350	2.607230	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_05G009120	SBH	0.0	0.469412	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_05g0009450	SBH	0.0	100.423065	0.0

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.