Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0025980 | OGI:04092450 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:31203524-31212250 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cacatcgccgctgtcgcccgcggtggcaaccaccgcctccttctcttcttcctcccccgccgccggccgccggccgcccgccgcccgaatcctcaaaccccaactccggttcaccgttcacctcccgccagccaaggtactactccttcaCccccccccccaccctctcctccctcgcttatcttgcgcccgcctttcaaacccacactgttcatgtcttcttcttgttcttgccacagccaacagcatgtcgagagccgtggcgcgccgatcgttgccgccgttcttgaggctgcgctccgcggtgtgcgacgacggatactggatcggtaggttggaccacaaggattggctttcccccaacgaattgctcaagatcttcgcgaacatcagggatcctagccttattaccagttccttcaagagagcttgtgatagaagggattacaagcccaatgaggcactctatagcatgatgatcgacaggctagcatcctgcaggaggttcagtgatgtggaggagttgctggccagggcaagagctgagaggttcaggttttctgatgagttcttctacaggctgatcaagatgtacggcaatgtggcgaaccatcccgagaaagcaatcgagactctctttgcgatgcccgggtataactgttggccgtcgaccaagacttttaactatgttcttcacatgcttgtgtgtaagaggcagtacgaagttgtccatgaggtctacttgagcgcgtcaaggttgggagtgacattggacacctgctgcttcaatattcttgtcaagggcttgtgtcagttcggcaaatttggcgatgcgatttcgctgttgtatgagatgccgaagcaaggttgcgtgcctaatgtgacgacctactctacattgatgaatttcctctgtcaacatggtcaggtggacaaagcattcgagcttggtgagagaatgcagaaggaggatattgttgcagatgcagttgtctacaatattttgatcgctggtctttgcagagaacaaagggtaacagaggcattcaatttgtttaagtcaatggttcctaagggatgctatcccaattcagggacatatcaggtacttcttgatggtcttttgagctcaggaaagtttgtagaggcaaagggccttgttagcatgatgagggcagaacgtatgaggcccggtttctcatcattcaagttactgatagatggactctgtagtgtaaactgtttagacgacgcgcatcttgtcttgaagcaaatggtggagcaaggtttcgttcctcgggtgggtacttggacaaaacttgttacatcaatgtgctagattgtggtctcatgccagtgatttatggaacaactcaaatattcaaatagtaatatttctgatatggtagcttggtactattggggtcttataatggccaagaccttttcactagggctgtatgtgatcaggatctaatatagatcgggattgtgtgaagctgggaaaggtattgtttgttttggtaagtttgtgagattagataattatttacaaaaagtaactatcttttgtccactatgagattgaaaatgtgaaatatctgaagagaatgtatataattgcagctgatcttcactcttatagtcttgccttctggccttcccatcattttcttctgaatctggaccttcttgccattaaatttcatgcatgcaacctgaaagatgcacatgatgaggtattttgttgtcttttacatcttatgatattgctttttttttcacgtccataccgtttctttctgggaacagtgtttacaaaatagtttttcgcctctttcctttactatgtgattgttgaaccatccatcatgccagtacacctatcttcctgccttcctgggtttcactgacatctgagaccctcacagtcttgttgaactgtaagtggtgaaaatttttcaatcacaatgatggacccagttttttttttttgttacagttttcagagggtgtactataaggaaaagaatctggtgcggtaaagaagtaacttcatgaagaagtgaagttcaggagtcaggattaaaggataatagtggttgcatgagcaagaaattgcctgtcttctgttttttgcacgaagcaacttatcgggcatggcatgcatatctatatgttcaattcgcatctctggattgcccaacaaaccaacagttgtctattggttgatcaggaactagtctgagatgacttggtcagttgattgcaccaagtaaaagcgactaatgtgtacggcgtactaaaaataatcatgagtttgtgttggacactttgacattgtaaactatgattagtcaactatccgcaccagaaatcttgaatAaaaattgcatatcttgcagtacagtgctggtacagaagtacagaactattgcctattacagctaactttagtcttacaatttctcctgtctcattaacttttgatctggtgaaacataaactgaaaaataaatcctttggtaaggcgatttctgtttatgcctccagtgttttagagctagtagttgcaatgtcatactaatggtttgacaaaagtgcaggcagcaacaggggatctgagaacgacgtgtcatgggcgaacccatcgtcgccatcgccatgaacgaagctggagatgatggagcctccatggaaaagaagcttatttacatctaattgttctatctaagctgagatttaccttgacagatgtccagactccacagatccctgggcttatgcagactgcagagaagctgggacatgtgtccatgctgatgaactggtgctcagtttgcaaatgccaacaagaacagccggttagccactgcacatgacaacagggtcatcacaatgtgcatcaatctagaccagcacatgctgcaggaatcagacaggtgactgaacggtgctctggtgctggaaagttcaggttttggctgctttcgccttcatttttaacccatctcatttcagcctggtcgccactgaaaacgtggctatcatcggcttggctgggtttcctcctacctaacttcggtatcaaatgcatcaatcattttcttgatctgaacattgaacatttcatcatttcaatgagcccatcataagacgtgtactgtttctgaggtgggccatctgccattctgccccatgaccattagtaccactactagtactgaaactgttgagcctgaccaaattttctccttgattgcagttcctccaaacgcacaaagatccatcaaaaactaaatgaaaaacgagtgatttgcagcaagttaggcaggatgcgatctatactcttgcaagtgcatgcatagctgaagcccaatcagagagcaagaacagaagattcccagaaataaataaatagagaagaaaaaaagaggaggaaacagacgtaatggatggaaaagaaattcaagtgctgacgtttaagtaggaattgttaggtacaatctcaaaatctcttggcatgaaagtgttgaccatctctctctctgcgcacgcgccaatctgaaacaatcaatcaaccgacccagcagtgctcgtttatacttgtaggcttctgtcatcatccttcTttttttttttcttcgtgtttatttatggttggttttcaccgacaaaatactgacacttgatccaccgatgtatccagatttgattcgtaattggtttgaatcattatactatcgtatttaggaactgattcgaatcgtattcctggtgttgtttagtatttttactgatgaagtacttactggtagattattattactgtatttttaattcagagagacctgtgtttattggaggcagcaccacacataattgcactgacgaatcggtcggcaaggtaaaacaagtgaggaaggcgccttgcaatcgcaggagcagcgtggcagaattgtggagctttgacttgcacaaatctgatggctttatcagtttatttatcgttgccatggcaagctaaaaatatattcttgcgtagatattgctcgcaagcaaactgtagatcctttggaaatacataaagttgtttctacgattgaatccctacgtaaacccgggacgctaggtgtattctttattcatttaaaattttaaatgtcaagaatggaaagaacattattatcaaaatttgacctttattacttgctcacaaaatacatttttaaacctataaaaccaactgtttgtcttcttaaaaaactatacgagtatcatttattgcgatatcactaaatgtcatttatgcataacttatatttttctatatttgtattaaatttttaagtagagtaaatttactctattttgatcaagatattttgatcaaactatcacaaaacagatttaagatgaaatatgacaaaactacggattatgtagcaaatttatcacaaaacctataaatttagtgttgatttaatcacaaaactacaatgtttataacaccaacataacattagtactagaaatttaagctccttcaaaatatgtagtttctagataacttcaacaataaatttatattatagttttacgatacttagttttaaatatatttttcttacaaatttaacgttaaatctatgatacaaaatctatagtaattgctgattaaaatctagtcccaaagcagggagtacaaatttgacttttcaaaaattcccctacatggctgtactgtacgtagggtccgagtaactggcagcgacgttaatttcgaaaataaagaaaacccgagaagtgaaaatggaccaaactgtcgcgccaccgtctatttctctccttccctctcctctcctctcctctctcgccatctctctctcctccgatctgcgcagccagccggagccaccgccgcctctctgtcgccgcctcgcccgcgggggctccggcgaacgggccgcccgcctcgacctcccctccttcccgtcgccgagctagcctctccacgctgcgcggggccgcctccggcgagcaggctgggcctcgggcctcggggcctcattccaccgccctgcgcctctcggttcggatcggcttgaaggtgaaggtatttgcatgcatctctctctcggtctctctcccgcttgcgtttagtctggagatccgtccggactggtggtgactttctttttgcaacgcgggaatttttgtctggttcttattgcttacgggattcccgtgaaggtgctgcgttccaaaggaatccttcgattgattgatttatttcagtcgaattaaccgtccgttttgctcctgatgatttccttcgtttgtttttgatgcgcagtcttattccagtttgttttcacccattttttttttcaaatataaatatgccccaattttgggttgttcatgaattaggttttaattaatgaggtgtgttatcttgtaattttagcttcgactgtgtgtatgcccgatcaaattttctagcaattttttttctaacctgtacttacgtgtaaatgcaatactgatttcctcaaatgggtgaatgttgtacaccttgtggtggctttcagtacagagttggaggcaggaaattctgaatttacacccgaatttgccggtacaacttttaatttgccaagtcacatttgcaggtatggacttcggtgattctagacgcaagcctaatgtcgtcgggaagttcaccgtagctgttgcactcacggtcatgtgcatcattgtgttgaaacagtcgcctggttttaccagtacaagtgtggtaagtgccgaatctctccacaactagcccacttcactgtcgaattgtcgattgctgttgagtcctcacttctcgttgttgtattgttcaaacttgatttaattgtgacacgtaagtttcatttggaacaatcgcatattgtctgacagaaagaggttcctttaacatgattgaaagaaacacattgatcgtccattccatttgatgaattcactgttcatttatctgtgttctgtgctagtagtggttattttctatgcaccatcgtagtttccgataaagcacattcataattccattggaagcaaagctgtttttgtgaagcatttcagattgtcatctgatctagttttcatgatacattcacatgctctatagttctctcgccatgaaattggtgtgactcatgtgttggtgactggaggagctggatacattgggtcacatgctactcttcgtctacttagggacaactaccgagttaccattgtggtaaatttCTTATTCCAGCTTCATGTTTTTATTCCTAACTCAAAGAGCTTTTATGTTACAGCAATtTCttCcatgtgatctttacaggataacctttctagagggaacatgggagctgtcagagtccttcaacgtttgtttccagagcctgggaggcttcagtttatttatgctgatttaggcgatgcgaaagctgtatcctttttctctacaatgtgaactttaataccttattatagccatttttccatacattcatgtgttggtgtgatctgttttgcacttaaccaatagccaggttaacaaaatattttcagaaaatgcattcgatgctgttatgcactttgctgccgttgcttacgttggtgagagcacgttggagccactgaggtaaggcattgatgtgctaatgttcttgtattcatgttacatagatggtggttatttatatattgcatgttcatgtgcaatcctttgatgtgttcagagcaatgcaaactgctcttggttatctctattattaaacaaaactgctaaacatgacaatctatattgaaaacatactatatagtgaaaatggaaaatataggcattccatctttttcaatgttggcattttttgccgataacatacttttggcacgagcaatttgaactgtgaagattagtgtgaaagactgcctaatgtaaatgtatgtgattttagttgataatttgttttccttttttgtatccttcagaaataatctgttgttaatgctgttactattacatgatctgtgctaatactgcaataacaggtactaccacaacataacatcaaatacattgacagtgcttgaggcaatggcagcatataatgtaaaaactctgatatactcaagtacttgtgcaacatatggtgaacctgacacaatgcctatcacagaagcaacccctcaggttggcttatcaatgcatggacttcttatctcaaagtttaaagaatatcatgcacaattcactgattctagacaatcttttaaccaatgcagaatcctatcaatccatatgggaaggcaaaaaagatggcagaggacatcattttagatttctctaagagatcagaaatggcagtcatgatcttaaggtccgcctctcctatagcctatactaaaatttaattcgtagagaaaactcacttcattttcttttgaattagatacttcaacgtcattggatcagacccaggggggcggttaggggaagctccacgaccagagctgcgtgagcatggacggatttctggtgcttgctttgatgcagcactgggaatcattccaggtttgaaggtactgaacatgctcacttcagcatgtgtcctgacttttcacatggtaacatactatggtatatgactttcaccctgctttaggttcggggaactgattaccctacagctgatggaacttgcataagggactatattgatgtcacggatctcgttgatgctcatgtgaaagctcttgataaagctcagcctggcaaagttggaatctacaatgttggcacaggacatggttgttaaaaatatcactaatcatctcaacacatgcacaattatgtactcatttctctgcatgtatttccttgtttctgattgtgctttgctcatgattttatcaggtagatcagtgaaggagtttgtagaagcatgtaagagcgcaacaggagctagcatcaaggtttcattccttacccggagaccaggagactatgctgaagtttacagtgacccatccaaaatccatgacgagctgaactggacagcccgttacactgatcttcgcgaaagcctttcaactgcatggaaatggcagaaagcacacccgaatgggtatggatcggcctgattcagggtttaatagattcagacttaaggtacacagattctcaggtccatgtgcagaaatcatatatccttcagaaaatcggttcttcagcacaaacatagtgccaggcacagaagtgttctgaatttttttggcagcatttggaagaagatacagaaagaatggcccctctattcctggcttaggatcatacatatagttttttttttccttgacattttttttaatcttttctactcgttaaagcataatataataaccaatagaaaatgtgttgtagacaaggtagataactatcatgtatgaacgttcatggtgttgaatgaaaggatatatgaataagtagatgtttgcttattattggaagttaaatttccattttggcaagctcagcggttaaatttcttgtatgtgaagcaaggggtgactggggacaatgcattgctgtgcacaactcctggtctcacttgcaaaaacatttcttacatgtaactagagtacaagtggttggattataccgtatgtacatgaacgtcaattcgc
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| CDS seq | atgtcgagagccgtggcgcgccgatcgttgccgccgttcttgaggctgcgctccgcggtgtgcgacgacggatactggatcggtaggttggaccacaaggattggctttcccccaacgaattgctcaagatcttcgcgaacatcagggatcctagccttattaccagttccttcaagagagcttgtgatagaagggattacaagcccaatgaggcactctatagcatgatgatcgacaggctagcatcctgcaggaggttcagtgatgtggaggagttgctggccagggcaagagctgagaggttcaggttttctgatgagttcttctacaggctgatcaagatgtacggcaatgtggcgaaccatcccgagaaagcaatcgagactctctttgcgatgcccgggtataactgttggccgtcgaccaagacttttaactatgttcttcacatgcttgtgtgtaagaggcagtacgaagttgtccatgaggtctacttgagcgcgtcaaggttgggagtgacattggacacctgctgcttcaatattcttgtcaagggcttgtgtcagttcggcaaatttggcgatgcgatttcgctgttgtatgagatgccgaagcaaggttgcgtgcctaatgtgacgacctactctacattgatgaatttcctctgtcaacatggtcaggtggacaaagcattcgagcttggtgagagaatgcagaaggaggatattgttgcagatgcagttgtctacaatattttgatcgctggtctttgcagagaacaaagggtaacagaggcattcaatttgtttaagtcaatggttcctaagggatgctatcccaattcagggacatatcaggtacttcttgatggtcttttgagctcaggaaagtttgtagaggcaaagggccttgttagcatgatgagggcagaacgtatgaggcccggtttctcatcattcaagttactgatagatggactctgtagtgtaaactgtttagacgacgcgcatcttgtcttgaagcaaatggtggagcaagcttggtactattggggtcttataatggccaagaccttttcactagggcttacacctatcttcctgccttcctgggtttcactgacatctgagaccctcacagtcttgttgaactatgtccagactccacagatccctgggcttatgcagactgcagagaagctgggacatgtgtccatgctgatgaactggtgctcagtttgcaaatgccaacaagaacagccgagagacctgtgtttattggaggcagcaccacacataattgcactgacgaatcggtcggcaagtacagagttggaggcaggaaattctgaatttacacccgaatttgccggtatggacttcggtgattctagacgcaagcctaatgtcgtcgggaagttcaccgtagctgttgcactcacggtcatgtgcatcattgtgttgaaacagtcgcctggttttaccagtacaagtgtgttctctcgccatgaaattggtgtgactcatgtgttggtgactggaggagctggatacattgggtcacatgctactcttcgtctacttagggacaactaccgagttaccattgtggataacctttctagagggaacatgggagctgtcagagtccttcaacgtttgtttccagagcctgggaggcttcagtttatttatgctgatttaggcgatgcgaaagctgtatcctttttctctacaatccaggttaacaaaatattttcagaaaatgcattcgatgctgttatgcactttgctgccgttgcttacgttggtgagagcacgttggagccactgaggtactaccacaacataacatcaaatacattgacagtgcttgaggcaatggcagcatataatgtaaaaactctgatatactcaagtacttgtgcaacatatggtgaacctgacacaatgcctatcacagaagcaacccctcagaatcctatcaatccatatgggaaggcaaaaaagatggcagaggacatcattttagatttctctaagagatcagaaatggcagtcatgatcttaagatacttcaacgtcattggatcagacccaggggggcggttaggggaagctccacgaccagagctgcgtgagcatggacggatttctggtgcttgctttgatgcagcactgggaatcattccaggtttgaaggttcggggaactgattaccctacagctgatggaacttgcataagggactatattgatgtcacggatctcgttgatgctcatgtgaaagctcttgataaagctcagcctggcaaagttggaatctacaatgttggcacaggacatggtagatcagtgaaggagtttgtagaagcatgtaagagcgcaacaggagctagcatcaaggtttcattccttacccggagaccaggagactatgctgaagtttacagtgacccatccaaaatccatgacgagctgaactggacagcccgttacactgatcttcgcgaaagcctttcaactgcatggaaatggcagaaagcacacccgaatgggtatggatcggcctga
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| Protein seq | MSRAVARRSLPPFLRLRSAVCDDGYWIGRLDHKDWLSPNELLKIFANIRDPSLITSSFKRACDRRDYKPNEALYSMMIDRLASCRRFSDVEELLARARAERFRFSDEFFYRLIKMYGNVANHPEKAIETLFAMPGYNCWPSTKTFNYVLHMLVCKRQYEVVHEVYLSASRLGVTLDTCCFNILVKGLCQFGKFGDAISLLYEMPKQGCVPNVTTYSTLMNFLCQHGQVDKAFELGERMQKEDIVADAVVYNILIAGLCREQRVTEAFNLFKSMVPKGCYPNSGTYQVLLDGLLSSGKFVEAKGLVSMMRAERMRPGFSSFKLLIDGLCSVNCLDDAHLVLKQMVEQAWYYWGLIMAKTFSLGLTPIFLPSWVSLTSETLTVLLNYVQTPQIPGLMQTAEKLGHVSMLMNWCSVCKCQQEQPRDLCLLEAAPHIIALTNRSASTELEAGNSEFTPEFAGMDFGDSRRKPNVVGKFTVAVALTVMCIIVLKQSPGFTSTSVFSRHEIGVTHVLVTGGAGYIGSHATLRLLRDNYRVTIVDNLSRGNMGAVRVLQRLFPEPGRLQFIYADLGDAKAVSFFSTIQVNKIFSENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEAMAAYNVKTLIYSSTCATYGEPDTMPITEATPQNPINPYGKAKKMAEDIILDFSKRSEMAVMILRYFNVIGSDPGGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDYPTADGTCIRDYIDVTDLVDAHVKALDKAQPGKVGIYNVGTGHGRSVKEFVEACKSATGASIKVSFLTRRPGDYAEVYSDPSKIHDELNWTARYTDLRESLSTAWKWQKAHPNGYGSA |
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| Function | Probable UDP-arabinose 4-epimerase 2 [UniProtKB/Swiss-Prot:Q8H0B6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0025980 | OsNaBo_04g0025980.01 | Chr04 | 31203524 | 31212250 | + | NAM | ||
| CDS seq | atgtcgagagccgtggcgcgccgatcgttgccgccgttcttgaggctgcgctccgcggtgtgcgacgacggatactggatcggtaggttggaccacaaggattggctttcccccaacgaattgctcaagatcttcgcgaacatcagggatcctagccttattaccagttccttcaagagagcttgtgatagaagggattacaagcccaatgaggcactctatagcatgatgatcgacaggctagcatcctgcaggaggttcagtgatgtggaggagttgctggccagggcaagagctgagaggttcaggttttctgatgagttcttctacaggctgatcaagatgtacggcaatgtggcgaaccatcccgagaaagcaatcgagactctctttgcgatgcccgggtataactgttggccgtcgaccaagacttttaactatgttcttcacatgcttgtgtgtaagaggcagtacgaagttgtccatgaggtctacttgagcgcgtcaaggttgggagtgacattggacacctgctgcttcaatattcttgtcaagggcttgtgtcagttcggcaaatttggcgatgcgatttcgctgttgtatgagatgccgaagcaaggttgcgtgcctaatgtgacgacctactctacattgatgaatttcctctgtcaacatggtcaggtggacaaagcattcgagcttggtgagagaatgcagaaggaggatattgttgcagatgcagttgtctacaatattttgatcgctggtctttgcagagaacaaagggtaacagaggcattcaatttgtttaagtcaatggttcctaagggatgctatcccaattcagggacatatcaggtacttcttgatggtcttttgagctcaggaaagtttgtagaggcaaagggccttgttagcatgatgagggcagaacgtatgaggcccggtttctcatcattcaagttactgatagatggactctgtagtgtaaactgtttagacgacgcgcatcttgtcttgaagcaaatggtggagcaagcttggtactattggggtcttataatggccaagaccttttcactagggcttacacctatcttcctgccttcctgggtttcactgacatctgagaccctcacagtcttgttgaactatgtccagactccacagatccctgggcttatgcagactgcagagaagctgggacatgtgtccatgctgatgaactggtgctcagtttgcaaatgccaacaagaacagccgagagacctgtgtttattggaggcagcaccacacataattgcactgacgaatcggtcggcaagtacagagttggaggcaggaaattctgaatttacacccgaatttgccggtatggacttcggtgattctagacgcaagcctaatgtcgtcgggaagttcaccgtagctgttgcactcacggtcatgtgcatcattgtgttgaaacagtcgcctggttttaccagtacaagtgtgttctctcgccatgaaattggtgtgactcatgtgttggtgactggaggagctggatacattgggtcacatgctactcttcgtctacttagggacaactaccgagttaccattgtggataacctttctagagggaacatgggagctgtcagagtccttcaacgtttgtttccagagcctgggaggcttcagtttatttatgctgatttaggcgatgcgaaagctgtatcctttttctctacaatccaggttaacaaaatattttcagaaaatgcattcgatgctgttatgcactttgctgccgttgcttacgttggtgagagcacgttggagccactgaggtactaccacaacataacatcaaatacattgacagtgcttgaggcaatggcagcatataatgtaaaaactctgatatactcaagtacttgtgcaacatatggtgaacctgacacaatgcctatcacagaagcaacccctcagaatcctatcaatccatatgggaaggcaaaaaagatggcagaggacatcattttagatttctctaagagatcagaaatggcagtcatgatcttaagatacttcaacgtcattggatcagacccaggggggcggttaggggaagctccacgaccagagctgcgtgagcatggacggatttctggtgcttgctttgatgcagcactgggaatcattccaggtttgaaggttcggggaactgattaccctacagctgatggaacttgcataagggactatattgatgtcacggatctcgttgatgctcatgtgaaagctcttgataaagctcagcctggcaaagttggaatctacaatgttggcacaggacatggtagatcagtgaaggagtttgtagaagcatgtaagagcgcaacaggagctagcatcaaggtttcattccttacccggagaccaggagactatgctgaagtttacagtgacccatccaaaatccatgacgagctgaactggacagcccgttacactgatcttcgcgaaagcctttcaactgcatggaaatggcagaaagcacacccgaatgggtatggatcggcctga
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| Protein seq | MSRAVARRSLPPFLRLRSAVCDDGYWIGRLDHKDWLSPNELLKIFANIRDPSLITSSFKRACDRRDYKPNEALYSMMIDRLASCRRFSDVEELLARARAERFRFSDEFFYRLIKMYGNVANHPEKAIETLFAMPGYNCWPSTKTFNYVLHMLVCKRQYEVVHEVYLSASRLGVTLDTCCFNILVKGLCQFGKFGDAISLLYEMPKQGCVPNVTTYSTLMNFLCQHGQVDKAFELGERMQKEDIVADAVVYNILIAGLCREQRVTEAFNLFKSMVPKGCYPNSGTYQVLLDGLLSSGKFVEAKGLVSMMRAERMRPGFSSFKLLIDGLCSVNCLDDAHLVLKQMVEQAWYYWGLIMAKTFSLGLTPIFLPSWVSLTSETLTVLLNYVQTPQIPGLMQTAEKLGHVSMLMNWCSVCKCQQEQPRDLCLLEAAPHIIALTNRSASTELEAGNSEFTPEFAGMDFGDSRRKPNVVGKFTVAVALTVMCIIVLKQSPGFTSTSVFSRHEIGVTHVLVTGGAGYIGSHATLRLLRDNYRVTIVDNLSRGNMGAVRVLQRLFPEPGRLQFIYADLGDAKAVSFFSTIQVNKIFSENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEAMAAYNVKTLIYSSTCATYGEPDTMPITEATPQNPINPYGKAKKMAEDIILDFSKRSEMAVMILRYFNVIGSDPGGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDYPTADGTCIRDYIDVTDLVDAHVKALDKAQPGKVGIYNVGTGHGRSVKEFVEACKSATGASIKVSFLTRRPGDYAEVYSDPSKIHDELNWTARYTDLRESLSTAWKWQKAHPNGYGSA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0025980 | OsNaBo_04g0025980.02 | Chr04 | 31208333 | 31212076 | + | IsoSeq | ||
| CDS seq | aaatggaccaaactgtcgcgccaccgtctatttctctccttccctctcctctcctctcctctctcgccatctctctctcctccgatctgcgcagccagccggagccaccgccgcctctctgtcgccgcctcgcccgcgggggctccggcgaacgggccgcccgcctcgacctcccctccttcccgtcgccgagctagcctctccacgctgcgcggggccgcctccggcgagcaggctgggcctcgggcctcggggcctcattccaccgccctgcgcctctcggttcggatcggcttgaaggtgaaggtatggacttcggtgattctagacgcaagcctaatgtcgtcgggaagttca
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| Protein seq | KWTKLSRHRLFLSFPLLSSPLSPSLSPPICAASRSHRRLSVAASPAGAPANGPPASTSPPSRRRASLSTLRGAASGEQAGPRASGPHSTALRLSVRIGLKVKVWTSVILDASLMSSGSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 41.438747 | 27.342318 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0618050 | RBH | 0.246112 | 0.168263 | 1.203058 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52725 | RBH | 0.166211 | 0.113019 | 0.309275 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0618050 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0026670 | RBH | 0.859168 | 17.580019 | 16.486452 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0027430 | RBH | 0.0 | 0.000000 | 0.430368 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0027190 | RBH | 0.685521 | 22.032419 | 20.407621 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0026870 | RBH | 0.060098 | 0.859038 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027140 | RBH | 1.244199 | 0.000000 | 3.026198 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0494500 | RBH | 2.962528 | 21.2363985 | 6.2642215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0025970 | RBH | 0.099515 | 2.196870 | 3.910565 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0498500 | RBH | 5.9289505 | 28.80435 | 3.5350355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0026370 | RBH | 0.0 | 0.149136 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0026200 | RBH | 0.000000 | 5.426635 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0026250 | RBH | 0.0 | 9.840650 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0026710 | RBH | 0.407692 | 0.296740 | 0.592706 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026890 | RBH | 0.069288 | 11.403492 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026120 | RBH | 0.362927 | 11.202867 | 7.101348 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0001840 | RBH | 1.143636 | 65.482513 | 18.841433 |
