Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0026370 | OGI:04092450 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:32850561-32852651 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttctcgcacaccacatcgccgccgccgtcgcccgcggtggcgaccgccgcctcctcttcttcttcctcccctgccgccagccgccggccgccggccacccgaatcctcaacccccaactccggttcacctcctgccagccaaggtactcctccttcactcccccacctctcctccctcgcttatcttgcgcccgccttccaaacccacactgttcatgtcttcttcTTGttcttgcaacagccagcggcatgtcgagagccgtggcgcgccgatcgttgccgccgttcttgaggctgcgctccgcggtgtgcgacgacggatactggattggtaggttggaccacaaggattggctttCccccaacgaattgctcaagatcttcgcgaacatcagggatcctagccttattaccggttccttcaagagagcttgtgatagaagggattacaagcccaatgaggcactctacagcctgatgatcgacaggctagcgtcctgcaggaggttcagtgatgtggaggaggttttggccagggcaagagctgagagtttcaggttttctgatgagttcttctacaggctgatcaagatgtacggcaatgtggcgaaccatccccagaaagcaatcgagacgctctttgcgatgcccgggtataactgttggccgtcgaccaagacttttaactatgttcttcacatgcttgtgtgtaagaggcagtacgaagttgtccatgaggtctacctgagtgcgtccaggttgggggtgacattggacacctgctgcttcaatattcttgtcaagggcttgtgtcagttcggcaaatttgacgatgcgatttcgctgttatatgagatgccgaagcaaggttgcgtgcctaatgtgacgacctactctacattgatgaatttcctctgtcaacatggtcaggtggacaaagcattcgagctttgtgagagaatgcagaaggaggatattgctgcagatgcagttgtctacaatattttgaTCtctggtctttgcagagaacaaagggtaacggaggcattcaatttgtttaagtcaatggttcctaagggatgctatcccaattcagggacatatcaggtacttcttgatggtcttttgagctcaggaaagtttgtagaggcaaagggccttgttagcatgatgagggcagaacgtatgaggcccggtttctcatcattcaagttactgatagatggactctgtagtgtaaactgtttagacgacgctcatcttgtcttgaagcaaatggtggagcaaggtttcgttcctcgggtgggtacttggacaaaacttgttacatcaatgtgctagattgtggtctcatgccagtgatttattgaacaactcaaatattcaaatagtaatatttctgatatggtagcttgggactattggggtcttataatggccaagaccttttcacttgggctgtatgtgatcagtgctaatatagattgggattgtgtgaagctgggaaaggtattgttcgttttggtaagtttgtgagattagataattatttacaaaaagtaactatcttttgtccattatgagattgaaaatgtgaaatatctgaagagaatgtatataattgcagctgatcttcactcttatggtcttgccttctggccttcccatcattttctcctgaatctggaccttcttgccattaaatttcatgcatgcaacctgaaaggtgcacatgatgaggtattttgttgtcttttacatcttatgatattgcttttttttcacgtccataccgtttctttctgggaaacaatgtttacaaaatagtttttcgcctctttcctttactatgtgattgttgaaccatccatcatgccagtacacctatcttcctgccttgctgggtttcactgacatttgtgagaccctcacagtcttgttgaaccgtaagcggtgaaaatttttcaatcacaatgatggacccagtttttttttttttttttttttttttttttttttttttaacagttttcagagggtgtgctataaggaaaagaatctggtgctgtaaccggtaaagaagtaacttca
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| CDS seq | atgtcgagagccgtggcgcgccgatcgttgccgccgttcttgaggctgcgctccgcggtgtgcgacgacggatactggattggtaggttggaccacaaggattggctttCccccaacgaattgctcaagatcttcgcgaacatcagggatcctagccttattaccggttccttcaagagagcttgtgatagaagggattacaagcccaatgaggcactctacagcctgatgatcgacaggctagcgtcctgcaggaggttcagtgatgtggaggaggttttggccagggcaagagctgagagtttcaggttttctgatgagttcttctacaggctgatcaagatgtacggcaatgtggcgaaccatccccagaaagcaatcgagacgctctttgcgatgcccgggtataactgttggccgtcgaccaagacttttaactatgttcttcacatgcttgtgtgtaagaggcagtacgaagttgtccatgaggtctacctgagtgcgtccaggttgggggtgacattggacacctgctgcttcaatattcttgtcaagggcttgtgtcagttcggcaaatttgacgatgcgatttcgctgttatatgagatgccgaagcaaggttgcgtgcctaatgtgacgacctactctacattgatgaatttcctctgtcaacatggtcaggtggacaaagcattcgagctttgtgagagaatgcagaaggaggatattgctgcagatgcagttgtctacaatattttgaTCtctggtctttgcagagaacaaagggtaacggaggcattcaatttgtttaagtcaatggttcctaagggatgctatcccaattcagggacatatcaggtacttcttgatggtcttttgagctcaggaaagtttgtagaggcaaagggccttgttagcatgatgagggcagaacgtatgaggcccggtttctcatcattcaagttactgatagatggactctgtagtgtaaactgtttagacgacgctcatcttgtcttgaagcaaatggtggagcaaggtttcgttcctcgggtgggtacttggacaaaacttgttacatcaatgtgctag
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| Protein seq | MSRAVARRSLPPFLRLRSAVCDDGYWIGRLDHKDWLSPNELLKIFANIRDPSLITGSFKRACDRRDYKPNEALYSLMIDRLASCRRFSDVEEVLARARAESFRFSDEFFYRLIKMYGNVANHPQKAIETLFAMPGYNCWPSTKTFNYVLHMLVCKRQYEVVHEVYLSASRLGVTLDTCCFNILVKGLCQFGKFDDAISLLYEMPKQGCVPNVTTYSTLMNFLCQHGQVDKAFELCERMQKEDIAADAVVYNILISGLCREQRVTEAFNLFKSMVPKGCYPNSGTYQVLLDGLLSSGKFVEAKGLVSMMRAERMRPGFSSFKLLIDGLCSVNCLDDAHLVLKQMVEQGFVPRVGTWTKLVTSMC |
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| Function | Pentatricopeptide repeat-containing protein At3g14580, mitochondrial [UniProtKB/Swiss-Prot:Q9LUD6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0026370 | OsLima_04g0026370.01 | Chr04 | 32850561 | 32852651 | + | NAM | ||
| CDS seq | atgtcgagagccgtggcgcgccgatcgttgccgccgttcttgaggctgcgctccgcggtgtgcgacgacggatactggattggtaggttggaccacaaggattggctttCccccaacgaattgctcaagatcttcgcgaacatcagggatcctagccttattaccggttccttcaagagagcttgtgatagaagggattacaagcccaatgaggcactctacagcctgatgatcgacaggctagcgtcctgcaggaggttcagtgatgtggaggaggttttggccagggcaagagctgagagtttcaggttttctgatgagttcttctacaggctgatcaagatgtacggcaatgtggcgaaccatccccagaaagcaatcgagacgctctttgcgatgcccgggtataactgttggccgtcgaccaagacttttaactatgttcttcacatgcttgtgtgtaagaggcagtacgaagttgtccatgaggtctacctgagtgcgtccaggttgggggtgacattggacacctgctgcttcaatattcttgtcaagggcttgtgtcagttcggcaaatttgacgatgcgatttcgctgttatatgagatgccgaagcaaggttgcgtgcctaatgtgacgacctactctacattgatgaatttcctctgtcaacatggtcaggtggacaaagcattcgagctttgtgagagaatgcagaaggaggatattgctgcagatgcagttgtctacaatattttgaTCtctggtctttgcagagaacaaagggtaacggaggcattcaatttgtttaagtcaatggttcctaagggatgctatcccaattcagggacatatcaggtacttcttgatggtcttttgagctcaggaaagtttgtagaggcaaagggccttgttagcatgatgagggcagaacgtatgaggcccggtttctcatcattcaagttactgatagatggactctgtagtgtaaactgtttagacgacgctcatcttgtcttgaagcaaatggtggagcaaggtttcgttcctcgggtgggtacttggacaaaacttgttacatcaatgtgctag
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| Protein seq | MSRAVARRSLPPFLRLRSAVCDDGYWIGRLDHKDWLSPNELLKIFANIRDPSLITGSFKRACDRRDYKPNEALYSLMIDRLASCRRFSDVEEVLARARAESFRFSDEFFYRLIKMYGNVANHPQKAIETLFAMPGYNCWPSTKTFNYVLHMLVCKRQYEVVHEVYLSASRLGVTLDTCCFNILVKGLCQFGKFDDAISLLYEMPKQGCVPNVTTYSTLMNFLCQHGQVDKAFELCERMQKEDIAADAVVYNILISGLCREQRVTEAFNLFKSMVPKGCYPNSGTYQVLLDGLLSSGKFVEAKGLVSMMRAERMRPGFSSFKLLIDGLCSVNCLDDAHLVLKQMVEQGFVPRVGTWTKLVTSMC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0026370 | OsLima_04g0026370.02 | Chr04 | 32850561 | 32852190 | + | NAM | ||
| CDS seq | atgtcgagagccgtggcgcgccgatcgttgccgccgttcttgaggctgcgctccgcggtgtgcgacgacggatactggattggtaggttggaccacaaggattggctttCccccaacgaattgctcaagatcttcgcgaacatcagggatcctagccttattaccggttccttcaagagagcttgtgatagaagggattacaagcccaatgaggcactctacagcctgatgatcgacaggctagcgtcctgcaggaggttcagtgatgtggaggaggttttggccagggcaagagctgagagtttcaggttttctgatgagttcttctacaggctgatcaagatgtacggcaatgtggcgaaccatccccagaaagcaatcgagacgctctttgcgatgcccgggtataactgttggccgtcgaccaagacttttaactatgttcttcacatgcttgtgtgtaagaggcagtacgaagttgtccatgaggtctacctgagtgcgtccaggttgggggtgacattggacacctgctgcttcaatattcttgtcaagggcttgtgtcagttcggcaaatttgacgatgcgatttcgctgttatatgagatgccgaagcaaggttgcgtgcctaatgtgacgacctactctacattgatgaatttcctctgtcaacatggtcaggtggacaaagcattcgagctttgtgagagaatgcagaaggaggatattgctgcagatgcagttgtctacaatattttgaTCtctggtctttgcagagaacaaagggtaacggaggcattcaatttgtttaagtcaatggttcctaagggatgctatcccaattcagggacatatcaggtacttcttgatggtcttttgagctcaggaaagtttgtagaggcaaagggccttgttagcatgatgagggcagaacgtatgaggcccggtttctcatcattcaagttactgatagatggactctgtagtgtaaactgtttagacgacgctcatcttgtcttgaagcaaatggtggagcaaggtttcgttcctcgggtgggtacttggacaaaacttgttacatcaatgtgctag
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| Protein seq | MSRAVARRSLPPFLRLRSAVCDDGYWIGRLDHKDWLSPNELLKIFANIRDPSLITGSFKRACDRRDYKPNEALYSLMIDRLASCRRFSDVEEVLARARAESFRFSDEFFYRLIKMYGNVANHPQKAIETLFAMPGYNCWPSTKTFNYVLHMLVCKRQYEVVHEVYLSASRLGVTLDTCCFNILVKGLCQFGKFDDAISLLYEMPKQGCVPNVTTYSTLMNFLCQHGQVDKAFELCERMQKEDIAADAVVYNILISGLCREQRVTEAFNLFKSMVPKGCYPNSGTYQVLLDGLLSSGKFVEAKGLVSMMRAERMRPGFSSFKLLIDGLCSVNCLDDAHLVLKQMVEQGFVPRVGTWTKLVTSMC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.149136 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0618050 | RBH | 0.246112 | 0.168263 | 1.203058 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52725 | RBH | 0.166211 | 0.113019 | 0.309275 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0618050 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0026650 | RBH | 0.0 | 0.0 | 0.654355 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0027430 | RBH | 0.0 | 0.000000 | 0.430368 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0027170 | RBH | 0.0 | 1.126993 | 1.607558 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0026850 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027140 | RBH | 1.244199 | 0.000000 | 3.026198 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0494300 | RBH | 1.555138 | 3.8827505 | 3.9478325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0025960 | RBH | 0.000000 | 0.0 | 0.320989 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0498300 | RBH | 1.2606165 | 4.7221045 | 7.310758 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0026200 | RBH | 0.000000 | 5.426635 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0026250 | RBH | 0.0 | 9.840650 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0026710 | RBH | 0.407692 | 0.296740 | 0.592706 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026890 | SBH | 0.069288 | 11.403492 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026100 | RBH | 0.0 | 0.861850 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025980 | RBH | 0.0 | 41.438747 | 27.342318 |
