Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0023160 | OGI:04085960 | 13/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:28810425-28816484 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgacggccgtggctggctggcgacggcgaggccgccacggcagcgatagtgccggcgagctggcggatggtggcggggttgagttgggcgtctatggttctggtggtggtggtgacggcgtcatggtggttcaaggcacgcggggatggcgatggcggcggggatggcgtcagtcaagggcgcgaaggcggcatcattggtccctgcgcggcgacgtcgcggtgctcggcggtggcggcgcctctcggctggatctggagggtggccggctgtggtggtcggcgacggcgggcgacttgcgacggctggcgacggcagttggcgactgcggcgaggtggtcgcggcaattggtagcgacggcgtcgaccaacgacgccagcgaaggaattggcggcagcatggcagagggcgacaacgaaaaggccgctggcagtggcggcggctcgcggaggcgctggctggtggccgcgacagcggtcaccggaggcatggcggcccttgacggctagccgagggcgtgggagacggctgcatttggccagcgcggcatcgtttggtagaagggtcagagaccggcttggcgcagagaggcgcagtcgatggcagtggaggctggctcgacgcgagaggcgcgggcagtggagttggaggccggcttggcgcgagagccgcagccgatggagggaggccggattggcacgagaggcgcgtccggtagaggaggccggcttagcgcgagaggcgcggccggcggtggaggaggcgacctaggtgtgagaaggagctgccggtgggtgtggcacggtcttcggcgcacgaaagctggccggcgggggacgccgatgcaggggtctcacttgtcggcagagcttgtgtggtggtggagcatcggtgtgtcagccgtgggtctcacccctcaagggtgattgccGggcgaaagcccagtcttggctcctttgagtcccgacggacggcggtggcggtttttccatcgcttctcttcttgaagacgtcgttttgcatcccctaaggagcgatctcggctgtgtccctttattggtctagtggcggccggtcacgcttagcggcggccggtccggtgctagccttttcctgggcttgtgtgttggcgatgtcggtgtgtgggtggtggtattttttttctttttcctggttacaactctccagggttataatcttgtaattttttcctgctctatcaatagaacttcgcaccgtctcgtgcgagtcgttaaaaaaactcgcacgagacataaaacaaatataaatttaatgaaataatagtatttaatgacataaaacaaacataaaacaaatataagtttataaaaagtataatagtatttttgacataaaacaaatatattattaaaatatattcaatgttatatttaatgaaattaatttaacattttatatattgctaaattgttctataaatttgattaaatttaacaaagtttgattagaaaagagtgaaatgacttataatataaatcagagggagtataacagaagctttaacaaTattacaatgactttcgcaaacgacaagtgacctgctgattgtttcgaggaaaatattttttgaacggaaattgtttcgaggaatttggtttttttggtccattcacatagcaaaatgtgatggcacagcaagctgcaccgatcagacaattaattaaccggttccgatgcgactcaaatcactcaactgctacacaatctgaagcatttttttatgctcttctgcctccggacatgcgtgacaacgtactcatttataagttcgatgtaaccatactgaacattatatttgcagatgcaaagcttcaacatgactcagttcatcgagcaaacgtagctatttgaacgaaataatcaagaagcttacgaaaataactctagttagctgtgttctttgctcaagttaccaacccctcgccctcgtgttccacgcacacgttttttaaactgttaaatggtgtgtttttttgcaaaaagtttctatatgaaagttgtttaaaacaatcaaattaatctaTttttttaaaaaattagctaatacttaattaatcacgtgctaatggatcgctccgttatttatgcgtactgttttagttggaaaccagagataacgaacacagccttaatcaacaattagaactgtggaatgatttacgggggaaattgggagtggagctagctgaccgcacataaagatgtgatgactcggaaaatgaatccaaatgggagattcacaaccagatccatgctagtaatatatccgtgctaacactacgatccttaaTtttttttaataaatgactaaaattttgtgttagaaaaaataatcagtttaatgggatttttaattcaaattatgccatataattaaggcaaattacaatgtaggtacttcacggcacctattttcagtaattttcaattatacatattctgccatattgaacaatcagactactatcattcatggtaatgtaggttgatcctgcaatggaaacaaattattccacaacagacataacctcttgctttacttttgtgatttgtactaaacttaattacaaaatgggttctggaatagtttgatcctaatcactggtcatcaaccattgctatagacaagagttttcttcatcctcatatatcatcagataagaaaaggaccagcagtgttcttAaaaactccatttcagtgacacctaacaaaatacagaggaacaaatccttcttgtctgctagcaaccaagaactctacggactacagcaacattctgtgattgccgccataacccatgtggtaaatatcaaccgaaagtaaacgaaaaaaattccagagaaaatattcaaacgttttataaaaataggAaaaaaaaagtagaactaatcaaccaacaaacccatatcttcttgtttgatattcatattctcttcctgctcagtcttgagacctcattttcagttttgacaagtaaaactaaaaaaatagaacatatcatgttcaggtgaaaacattgagaaaacgtgggcgatccattatctAaaattgcttattagcagtatcagaaacacgcaattcatccatcacattcagatatgcagcaaagaaatcgcaatttcagatatgcagtatattgtagaaaagcggctcatttagcaagaaagaggaacataataacaagagaaataaactaacaaaagatgagcatcaatcggatgcttttcctgatccccgatgcaactgagaaaaaaaaataggagccaaggatcgaggcttgtaagtttcatggattttgccaaaagtacggaataacggcagccagcaaatacaaataacaccataataaggtcatctagtcttccagcacaaaaaaatacacaagacactttggaccaatggcctgcgttgttcatccagacttcagagcatcagtatctcagaaataaaactcccgcttgcgaggaaatagaaatataccaatttaactaagaactagtatggttatatttttttttcacatagtaacatatatattttcacagaatataattatcatatattaaaatagcaacataattttaaattttgtactaacttagccgcaccaaccaatatataatattcatattgtattgtatatcacatgtaatattcatattgtattgtatatcacatgtaatattcatattgtattatatacatgatagttactaactacttttaaattttaaatttttgttatttctaaattggatttctgtatgtactctagactcctcttccaatatttcttcttttctaatttaaatgttctattatttaaaaaatttattcccatatggactctaaacctttctttcaataagtatttcttatttttaattctgaatttcaattAtttttaaattgtattcctatataaactctagagtactcttccaatatttgtaaattatatttctataatgactctaaaatattattttaataTtttttattttttaattccgaatattagttatttctaaattttattttttatggactctaactttagttctaaattttaattagttctacattgtatacatgtatggagtctagtcttattttcgaatattttatttttttaattaggaattcagttaTttttaaattatatttttatatggactccttttcaagttaaattctatatacctttggtctcaatattagattttctaaaaaaataattgtaatttcagattagtctgaattgtatttatacatagattcatcttgcaatagttagttatattttgaatttcaggtttttttttacttttggactctaaacgatattaatgcattgtgaccggagtctgtttttatacttgtatagttgtatttccgtttccacacactaagtctgtttcttattgatgtttggcactttgacagtttccatgaatcggtgtccgattgctttactacttcttttcatattttcattcgattaacatatccttctccgcttgtcTtttttatttttcttattttcttcaattaacgtggtaatttctaaaccttggaagcgaacgtggtagctcctttttctattacTttattaaggtaataaattgatacctatgagtattcaagtgtcaagaacattggctgatggaatgattgatatagtcatttggtcaccattatcaaacagtaaagcaatgtaaggtgtaagcaaaactcactgcactaactgagggcctatttagatctcacctcgaaattttacaccctatcacatcgagcgtttgaacacatgcataaagtattaaatataggctaaaactaattgtacatattgcgactattttacgagacgaattttttaagtctaattgctccatgatttgataatgtggtgctacagtaaacatttgctaatgacggattaattaggcttaataaatttgtctcacggtttacttacggattctgtaattatttttttattagtgcccgaacaCccacatgcgataccctataatatccgatgtgacacagcaaaactttacacccatggatacacccttgaattatgtatcggtgtttcaaggggaagaaatagatagcattcagagagttgtggcttgtcagcaaataccacaacaccatgatcagatcatctaaggcttctagcaaagaaaaacacaagacgctatggaccaattgtttgccttgggtttaaggcaaagtatgtgttaagtttattcagagcatcagggatctcagaagtaaactcctgcctacagggaaacagaaatttaacaatttcaactaagaattggtacccactacctactattcaacagccaagaacatcaacgtatggatcacagaatggtatggccgccaatatcataaagatacagtaaacatgacccattgcattactgtgaggtgcaagcaaaactcattgcattaactgaaaacaggaacagcaatacatggctcacctcgcatccatgacatcgtgcattgtgaccatgttatcctgctccccgtggatccctgatcgcacgcggtgcagctcctgcatatgcgcgccgacaccgagcaacaggccaaggtggacacagagcgtcctgacatacgtcccggcctcgcaggagatccagaacacggcaaggtgtcgctcggcatcgtgctcgagcagcttgctctcatagatagtcctcaccctgagctgccgcttcacggcggagatgagcgggaggcgctggaacacggcgcggcgcctgtgagcgcctcgagcgcgcgggcggtgtcggggacggcggcgtggaagcgcgcgacgcagacgtactccttgccggcgccctgctgcgacttgacgaggcgggtggcgcggtcgacgcagacgatgaggttgccggtgaccttgggatcgagcgtgccgctgtgcccggtcttgttgacgcggaggaggcgcttgatccacgcgacgacccagcgccgatctaa
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| CDS seq | atgacggccgtggctggctggcgacggcgaggccgccacggcagcgatagtgccggcgagctggcggatggtggcggggttgagttgggcgtctatggttctggtggtggtggtgacggcgtcatggtggttcaaggcacgcggggatggcgatggcggcggggatggcgtcagtcaagggcgcgaaggcggcatcattggtccctgcgcggcgacgtcgcggtgctcggcggtggcggcgcctctcggctggatctggagggtggccggctgtggtggtcggcgacggcgggcgacttgcgacggctggcgacggcagttggcgactgcggcgagaggaacaaatccttcttgtctgctagcaaccaagaactctacggactacagcaacattctgtgattgccgccataacccatgtgctcctgcatatgcgcgccgacaccgagcaacaggccaaggtggacacagagcgtcctgacatacgtcccggcctcgcaggagatccagaacacggcaaggtgtcgctcggcatcgtgctcgagcagcttgctctcatagatagtcctcaccctgagctgccgcttcacggcggagatgagcgggaggcgctggaacacggcgcggcgcctgcgggtggcgcggtcgacgcagacgatgaggttgccggtgaccttgggatcgagcgtgccgctgtgcccggtcttgttgacgcggaggaggcgcttgatccacgcgacgacccagcgccgatctaa
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| Protein seq | MTAVAGWRRRGRHGSDSAGELADGGGVELGVYGSGGGGDGVMVVQGTRGWRWRRGWRQSRARRRHHWSLRGDVAVLGGGGASRLDLEGGRLWWSATAGDLRRLATAVGDCGERNKSFLSASNQELYGLQQHSVIAAITHVLLHMRADTEQQAKVDTERPDIRPGLAGDPEHGKVSLGIVLEQLALIDSPHPELPLHGGDEREALEHGAAPAGGAVDADDEVAGDLGIERAAVPGLVDAEEALDPRDDPAPI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0023160 | OsNaBo_04g0023160.01 | Chr04 | 28810425 | 28816484 | + | NAM | ||
| CDS seq | atgacggccgtggctggctggcgacggcgaggccgccacggcagcgatagtgccggcgagctggcggatggtggcggggttgagttgggcgtctatggttctggtggtggtggtgacggcgtcatggtggttcaaggcacgcggggatggcgatggcggcggggatggcgtcagtcaagggcgcgaaggcggcatcattggtccctgcgcggcgacgtcgcggtgctcggcggtggcggcgcctctcggctggatctggagggtggccggctgtggtggtcggcgacggcgggcgacttgcgacggctggcgacggcagttggcgactgcggcgagaggaacaaatccttcttgtctgctagcaaccaagaactctacggactacagcaacattctgtgattgccgccataacccatgtgctcctgcatatgcgcgccgacaccgagcaacaggccaaggtggacacagagcgtcctgacatacgtcccggcctcgcaggagatccagaacacggcaaggtgtcgctcggcatcgtgctcgagcagcttgctctcatagatagtcctcaccctgagctgccgcttcacggcggagatgagcgggaggcgctggaacacggcgcggcgcctgcgggtggcgcggtcgacgcagacgatgaggttgccggtgaccttgggatcgagcgtgccgctgtgcccggtcttgttgacgcggaggaggcgcttgatccacgcgacgacccagcgccgatctaa
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| Protein seq | MTAVAGWRRRGRHGSDSAGELADGGGVELGVYGSGGGGDGVMVVQGTRGWRWRRGWRQSRARRRHHWSLRGDVAVLGGGGASRLDLEGGRLWWSATAGDLRRLATAVGDCGERNKSFLSASNQELYGLQQHSVIAAITHVLLHMRADTEQQAKVDTERPDIRPGLAGDPEHGKVSLGIVLEQLALIDSPHPELPLHGGDEREALEHGAAPAGGAVDADDEVAGDLGIERAAVPGLVDAEEALDPRDDPAPI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0576400 | RBH | 0.0 | 0.0 | 0.996189 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g37890 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0576400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0023830 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0024560 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024290 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024050 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0015710 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0542600 | SBH | 0.9255985 | 5.892707 | 10.258721 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023010 | RBH | 0.0 | 0.0 | 0.108330 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0548300 | SBH | 2.339071 | 5.9583315 | 21.007477 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0023460 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023450 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0023840 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024050 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G023250 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
