Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g37890 | OGI:04068830 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:22532232-22533701 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGGCGGCGAGGCTCCAACCCAGGCGGCGTGACCGCCTCGGCGTGAAGGGGCGGCTCGGAGCTTCGGGAAGGCCGCAGGGGCGGCGGCAGCGCGGCGAGGAGCGGCGGATCCGGCGCCGCCACCACCGGATCCGGCGCCCAGCATCGGCCACGAGGCGAGTGGCGGCTGGATCCGGTGTCTCCGCTGCCGGATCTGAGCCGTGGTGGTGCGGGAGCACGGCGGATGCGGCGACGCCGATGGCGCGACGGCCGTGGCTGGTCGGCGGTGGTGCGGAAGCGTCGCGTCGACGGGGAGACGCGGCATCGCCGGCAAGCGCTACGGCTGGGGGCGCGGGCGGCCGCAGCAGGCGCAGTGGCGCGACGGCTGTGGCTGGCCGGCGGGCGGCTGTGGCCGGCAGCGCGACACGACGGCCGTGGCTGGCTGGCGATGGCGAGGCCGCCACGGCGGAGATAGTGCCGGCGAGCTGGCGGCTGGTGGCGGGGTTGAGCTGGGCGGCAGTGGTTCTGGTGGTGGTGGTGACGGCATCATGGTGGTTCAAGGCGGCGGGGATGGCGATGGTGGCGGGGATGGCGTCGGCCGAGGGCGCGAAGGCGGCGGTATTGGTCCCTGCGCGGCGATGGCGCGGTGCTCAGCGGCGACGGCGGCGGTGCCCCCAGATCCGCGCCTCTCGGCTGGATTTGGAGGGTAGCCGGCTGTGGTGGTCAGAGACGTCGGCCGACTTGCGACGGCTGGCGACGGCAGTTGGCGACGACGGCGCTGTGGCCGCGGCAGTTGGCAGCGACGGCGTCGGCCGACGACGCCGGCGAAGGACTTGGCGGCGGCATGGCGAAGGGCGACAACGAAGCGGCCGCTGGCAGTGGCGGCGGCTCGCGGAGGCGGTGGCTGGTGGCCGCGACAGTGGTCACAGGAGGCATGGTGGCCCTGGACGGCTAGCCGAGGGCGTGGGAGACGGCTGCATTTGGCCGACGCGGCATGTTCTGGTGGAAGGGTCGGAGACCGGTTTGGCGCAGAGAGGCGCAGCCGATGGCAGCGGAGGCCGGCTCGGCGCGAGAGGCGCGGGCGGCGGAGTTGGAGGCCGGCTTGGCGTGAGAGGCGCAGCCGATGGAGGGAGGCCGGATTGGCGCGAGAGGCGCGTCCGGTGGAGGAGGCCGGCTTGGAGGAGGCGACCTAGGTGTGAGGAGGAGCTGCTGGTGGGTGTGGCGCGATCTTCGGCGCACAAAGGCTGGCCAGCGGGGGACGCCATTGCAGGGGTCCCACATGTCGGCAGAGCTTGTGTGGTGGTGGAGCATCGGTGTGTCAGCCGTGGGTCTCACCCTTCAAGGGCGATTGCCGGGCGTAAGCCCAGTCTTGGCTCCTTTGAGTCCCGACGGATGGCGGTGGCGGTTTTTCCGTCGCTTCTCTTCTTGAAGACGTCGTTTTGGCATCTCCTAGGGAGCGATCTCAGCTGTGTCCCTTTGTTGGTCTAG
More
|
||||||||||
| CDS seq | ATGGCGGCGGCGAGGCTCCAACCCAGGCGGCGTGACCGCCTCGGCGTGAAGGGGCGGCTCGGAGCTTCGGGAAGGCCGCAGGGGCGGCGGCAGCGCGGCGAGGAGCGGCGGATCCGGCGCCGCCACCACCGGATCCGGCGCCCAGCATCGGCCACGAGGCGAGTGGCGGCTGGATCCGGTGTCTCCGCTGCCGGATCTGAGCCGTGGTGGTGCGGGAGCACGGCGGATGCGGCGACGCCGATGGCGCGACGGCCGTGGCTGGTCGGCGGTGGTGCGGAAGCGTCGCGTCGACGGGGAGACGCGGCATCGCCGGCAAGCGCTACGGCTGGGGGCGCGGGCGGCCGCAGCAGGCGCAGTGGCGCGACGGCTGTGGCTGGCCGGCGGGCGGCTGTGGCCGGCAGCGCGACACGACGGCCGTGGCTGGCTGGCGATGGCGAGGCCGCCACGGCGGAGATAGTGCCGGCGAGCTGGCGGCTGGTGGCGGGGTTGAGCTGGGCGGCAGTGGTTCTGGTGGTGGTGGTGACGGCATCATGGTGGTTCAAGGCGGCGGGGATGGCGATGGTGGCGGGGATGGCGTCGGCCGAGGGCGCGAAGGCGGCGGTATTGGTCCCTGCGCGGCGATGGCGCGGTGCTCAGCGGCGACGGCGGCGGTGCCCCCAGATCCGCGCCTCTCGGCTGGATTTGGAGGGTAGCCGGCTGTGGTGGTCAGAGACGTCGGCCGACTTGCGACGGCTGGCGACGGCAGTTGGCGACGACGGCGCTGTGGCCGCGGCAGTTGGCAGCGACGGCGTCGGCCGACGACGCCGGCGAAGGACTTGGCGGCGGCATGGCGAAGGGCGACAACGAAGCGGCCGCTGGCAGTGGCGGCGGCTCGCGGAGGCGGTGGCTGGTGGCCGCGACAGTGGTCACAGGAGGCATGGTGGCCCTGGACGGCTAGCCGAGGGCGTGGGAGACGGCTGCATTTGGCCGACGCGGCATGTTCTGGTGGAAGGGTCGGAGACCGGTTTGGCGCAGAGAGGCGCAGCCGATGGCAGCGGAGGCCGGCTCGGCGCGAGAGGCGCGGGCGGCGGAGTTGGAGGCCGGCTTGGCGTGAGAGGCGCAGCCGATGGAGGGAGGCCGGATTGGCGCGAGAGGCGCGTCCGGTGGAGGAGGCCGGCTTGGAGGAGGCGACCTAGGTGTGAGGAGGAGCTGCTGGTGGGTGTGGCGCGATCTTCGGCGCACAAAGGCTGGCCAGCGGGGGACGCCATTGCAGGGGTCCCACATGTCGGCAGAGCTTGTGTGGTGGTGGAGCATCGGTGTGTCAGCCGTGGGTCTCACCCTTCAAGGGCGATTGCCGGGCGTAAGCCCAGTCTTGGCTCCTTTGAGTCCCGACGGATGGCGGTGGCGGTTTTTCCGTCGCTTCTCTTCTTGAAGACGTCGTTTTGGCATCTCCTAGGGAGCGATCTCAGCTGTGTCCCTTTGTTGGTCTAG
More
|
||||||||||
| Protein seq | MAAARLQPRRRDRLGVKGRLGASGRPQGRRQRGEERRIRRRHHRIRRPASATRRVAAGSGVSAAGSEPWWCGSTADAATPMARRPWLVGGGAEASRRRGDAASPASATAGGAGGRSRRSGATAVAGRRAAVAGSATRRPWLAGDGEAATAEIVPASWRLVAGLSWAAVVLVVVVTASWWFKAAGMAMVAGMASAEGAKAAVLVPARRWRGAQRRRRRCPQIRASRLDLEGSRLWWSETSADLRRLATAVGDDGAVAAAVGSDGVGRRRRRRTWRRHGEGRQRSGRWQWRRLAEAVAGGRDSGHRRHGGPGRLAEGVGDGCIWPTRHVLVEGSETGLAQRGAADGSGGRLGARGAGGGVGGRLGVRGAADGGRPDWRERRVRWRRPAWRRRPRCEEELLVGVARSSAHKGWPAGDAIAGVPHVGRACVVVEHRCVSRGSHPSRAIAGRKPSLGSFESRRMAVAVFPSLLFLKTSFWHLLGSDLSCVPLLV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g37890 | LOC_Os04g37890.1 | Chr04 | 22532232 | 22533701 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCGGCGAGGCTCCAACCCAGGCGGCGTGACCGCCTCGGCGTGAAGGGGCGGCTCGGAGCTTCGGGAAGGCCGCAGGGGCGGCGGCAGCGCGGCGAGGAGCGGCGGATCCGGCGCCGCCACCACCGGATCCGGCGCCCAGCATCGGCCACGAGGCGAGTGGCGGCTGGATCCGGTGTCTCCGCTGCCGGATCTGAGCCGTGGTGGTGCGGGAGCACGGCGGATGCGGCGACGCCGATGGCGCGACGGCCGTGGCTGGTCGGCGGTGGTGCGGAAGCGTCGCGTCGACGGGGAGACGCGGCATCGCCGGCAAGCGCTACGGCTGGGGGCGCGGGCGGCCGCAGCAGGCGCAGTGGCGCGACGGCTGTGGCTGGCCGGCGGGCGGCTGTGGCCGGCAGCGCGACACGACGGCCGTGGCTGGCTGGCGATGGCGAGGCCGCCACGGCGGAGATAGTGCCGGCGAGCTGGCGGCTGGTGGCGGGGTTGAGCTGGGCGGCAGTGGTTCTGGTGGTGGTGGTGACGGCATCATGGTGGTTCAAGGCGGCGGGGATGGCGATGGTGGCGGGGATGGCGTCGGCCGAGGGCGCGAAGGCGGCGGTATTGGTCCCTGCGCGGCGATGGCGCGGTGCTCAGCGGCGACGGCGGCGGTGCCCCCAGATCCGCGCCTCTCGGCTGGATTTGGAGGGTAGCCGGCTGTGGTGGTCAGAGACGTCGGCCGACTTGCGACGGCTGGCGACGGCAGTTGGCGACGACGGCGCTGTGGCCGCGGCAGTTGGCAGCGACGGCGTCGGCCGACGACGCCGGCGAAGGACTTGGCGGCGGCATGGCGAAGGGCGACAACGAAGCGGCCGCTGGCAGTGGCGGCGGCTCGCGGAGGCGGTGGCTGGTGGCCGCGACAGTGGTCACAGGAGGCATGGTGGCCCTGGACGGCTAGCCGAGGGCGTGGGAGACGGCTGCATTTGGCCGACGCGGCATGTTCTGGTGGAAGGGTCGGAGACCGGTTTGGCGCAGAGAGGCGCAGCCGATGGCAGCGGAGGCCGGCTCGGCGCGAGAGGCGCGGGCGGCGGAGTTGGAGGCCGGCTTGGCGTGAGAGGCGCAGCCGATGGAGGGAGGCCGGATTGGCGCGAGAGGCGCGTCCGGTGGAGGAGGCCGGCTTGGAGGAGGCGACCTAGGTGTGAGGAGGAGCTGCTGGTGGGTGTGGCGCGATCTTCGGCGCACAAAGGCTGGCCAGCGGGGGACGCCATTGCAGGGGTCCCACATGTCGGCAGAGCTTGTGTGGTGGTGGAGCATCGGTGTGTCAGCCGTGGGTCTCACCCTTCAAGGGCGATTGCCGGGCGTAAGCCCAGTCTTGGCTCCTTTGAGTCCCGACGGATGGCGGTGGCGGTTTTTCCGTCGCTTCTCTTCTTGAAGACGTCGTTTTGGCATCTCCTAGGGAGCGATCTCAGCTGTGTCCCTTTGTTGGTCTAG
More
|
|||||||
| Protein seq | MAAARLQPRRRDRLGVKGRLGASGRPQGRRQRGEERRIRRRHHRIRRPASATRRVAAGSGVSAAGSEPWWCGSTADAATPMARRPWLVGGGAEASRRRGDAASPASATAGGAGGRSRRSGATAVAGRRAAVAGSATRRPWLAGDGEAATAEIVPASWRLVAGLSWAAVVLVVVVTASWWFKAAGMAMVAGMASAEGAKAAVLVPARRWRGAQRRRRRCPQIRASRLDLEGSRLWWSETSADLRRLATAVGDDGAVAAAVGSDGVGRRRRRRTWRRHGEGRQRSGRWQWRRLAEAVAGGRDSGHRRHGGPGRLAEGVGDGCIWPTRHVLVEGSETGLAQRGAADGSGGRLGARGAGGGVGGRLGVRGAADGGRPDWRERRVRWRRPAWRRRPRCEEELLVGVARSSAHKGWPAGDAIAGVPHVGRACVVVEHRCVSRGSHPSRAIAGRKPSLGSFESRRMAVAVFPSLLFLKTSFWHLLGSDLSCVPLLV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0631500 | SBH | 1.049062 | 0.162371 | 0.386977 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0631500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0015220 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0016100 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015820 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0015410 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0015710 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0352000 | RBH | 4.3696535 | 4.610262 | 12.1723625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0014570 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0348500 | RBH | 0.028146 | 0.098755 | 0.0496345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0015180 | RBH | 0.069075 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014910 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014950 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0015550 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0015690 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014800 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014850 | SBH | 0.000000 | 0.000000 | 0.000000 |
