Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0021470 | OGI:04082200 | 14/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:27339153-27343745 | ||||||||
| Gene Symbol | OsDjA6, DjA6 | ||||||||||
| DNA seq | taaaggcccacgaccacaagcttagcaagccctctctcggtcgcgtggcttgagcggtggtgacaccgctcgcctccgtccgcctcgcctccaccgagaggttctctctgccgccgattcaggtacgatcgcttcactacgccccaatctttcatggccgagactctcctaaggaccggttggatcgcgtatgagccccccgtgatttttctggaggggggaaaccgagtgtaTttttttgcttgttctgcgccgttttcttggctgttctaccgatcttgttggttggattcttcggaggagaggtggagccttgtcctgatttggaggggaggcgaagttttccagggttgtgtaggacacctcgtgggggttcgcggtggctggagaaatattcgtgatcagctctccttaggggatttttttttttaccttagttgtctgctccgctcgaaacacagagttcggtggggatgagactagattttccttcgattttccggatgtttttgagttgggtgccaaatatgttaaaagttcaatgtggtcaggcacttgcgcatgtggtggagtcgtccttctacgaTtttttgttggttttatatttgttgtaaatgcgtaaaattagctcccattttagtttgtttaacagaactgattacattttatattactagcatattactgatcgttgagtacggagtatatatattaaaattacagtgatccttggcctttttactctctgtttggcatttcggtggctgttcaaaagccatagtttatttcgatgtttgattaaaaattgttactataagcattttaattatagttgtaacagggaaacaaagtcatactaggattagtaaaattcccctattttgagtagactccaatgcacaatatgtcaccgactcaaccactgcagactgacccttagttctacagatttacagggagattatcttgtgatctgtaaacatgtttgggcgtgtaccgaggagtaacaacaccaagtactatgaggttcttggagttcctaaaactgcaagcaaggatgagctaaagaaggcataccggaaggctgccataaaaaaccatcctgacaagggaggggatccagaaaaggtgaggatgtgccagtgtgacatgcaattgtttgaattcataatctctattttgtttttacatttttatgtgttttacagtttaaagaattatcacaagcgtatgaggttctcactgatcctgagaagagagacatatatgaccaatatggggaggatgctcttaaggatggaatgggaggaggcagtgacttccataatccatttgacatatttgagcagtttttcgggggtggtgcctttgggggtaagcaacatatgtaccctgaaattttccagcaccctcaacaTttttttgtttgaactttttttttAaaaaaaaaaacagaattattcatgctaacttttatggttaacagggagtagctcaagagtacgcagacagagacgtggtgaagatgtggtgcatactttgaaggtgtctttagaagatgtgtataatggatctatgaagaaactatcattatcacgaaatattctgtgcccaaagtgcaaagggtaagcctttgtatgttattgctgcacttcaatttgctaactggaggaaatgatgtactcattatttggcaaaattattacttatcatgctctttcactttagcattatcgttacatatgattccatctagttgaaaataaggtgtaaatagttatcccgaagtgttcactgtaatttctctatattgctagtttaaatccatcaactggtgattgtatttgttttgtattttcgtgcgcacttatttctattatttttgcatgtacttgagatgcagggaaacccagttaaatgtttcggttactggataatcccttaacattatcccattccatttatgttctgtttcaacctatccataaaaaaaatcattaatgagagacctaatgctaacggatacatgcttgtgtcagccaacaatgttagaagatatccttacatttatccacactgcttctattcttgaatcttttattgaattaaaataaggtgcaaacgcaattttatagaacctgaaccatctccaaaagtccaaaactagtttaataagggtatcttgcacatttggggaatatgttggactccatgctaaagccaatgtttattatagtcctacatatctatactcctctaaaagaccccaatggtggtggtgagtattgaatttgccaccacccaccaccactgcatgtgggtcccccaaatagtgaggtaggtggacttttgccccttccccaacctcaagccatcaaacagaaaaattttcttttgaagtgaggtaaaaatgatgacaaataatatgactagaagattttacaatgagaataattttattaatttttgaggctgtaaagtgtatggaggagttctcttcatgttgcaatgcaggggcattcagatagtataattatagaataacatatgtagtatgtaaatcctgattaagatggctgtgaattggcctatataatgccaagcttgcaataccgactaccgaatacctagtctaattttgactgcctctgtaaatacgacatctaatgtgcaatgaaagctaacctcccattttataaagaaatagacagtgcacccaatcaaatagacagtgcctattgaaatgcttcatcccagtaaagctttaaaaataagtccagcccagttaaaacacattacacagatcaaatacatctatatggccgatttcaacccaggtttattcaccattctgaggcgtagctagctctatcaccataattagtttagtttatcattcaaaatatatacgaggcaaaattcatgtttttttttgtggcccatttcaatccaggtttattcaccattctgaggggccctgtaaaattccttctataaatatagaagaggcaaaggttttgcccttcattcaaaaaaataattagtttatcatgttttttttatctgttttgagtgttgactgtagtgtttcaccttttccatcttactctctgctttcagaaaagggaccaaatctgaggctccagcaacatgctatggttgtcatggtgtaggaatgaggaatataatgcgacagataggactaggcatgattcaacatatgcagactgtctgtcctgaatgcagaggatcaggtatgcaacagttgctccaatttttatgctatatcttgctgcaaaattgtgatttcttaggagcctgctttatgtttgtaatgttctatacttgatcaggtgagatcataagtgacagggataaatgcacaaactgcagagctagcaaagttattcaggagaaaaaggtgcttgaggttcatattgagaagggaatgcaacatggccaaaaaattgtattccaaggtgaagctgatgaagctgtaagtttattttgtccatttatactagtatacatacttgcagccacatattcatccatccttgtgctaatgaatatctgtgcatgcactactttctttatctaatattttgcactgtgtgtttcatgctgttgcagcctgatacagtgacaggagatatagtatttatcttgcaagttaaggtacatccaagatttaagaggaaatatgatgacctgttcattgagcgcacaatctctttaactgaggcattgtgtgggttccaattcatcctcactcatctggacagtaggcagctcctaatcaaggcaaatccaggcgaaattattaaacctggtatctcatccccttaaaatgctagcctttttgtttgccacttcgtaattctgttttttctattcagattctaatcagttgcagacttttttaaagaattaactcaaatattttccaaacaggtcaacacaaggccataaatgatgagggaatgccacaccatggccggcctttcatgaagggccgtctctttgtggaattcaatgttgagttccctgaatctggtgtactctcccgtgaccaatgccgggcacttgagatgatcctaccacctaaacctgggcaccaattatcagatatggacctggatcaatgtgaggaaactaccatgcatgatgtgaacatagaagaggagatgaggcgcaagcagtatcaaaggaagcaggaagcgtacgacgaagatgaggaggaggatgctccaagagtacagtgtgctcaacagtaagaagtgtcactttctggcgcaagtgatgatactccatgtaaactaagtagtttttggtgagactgttcattttagtgtattttgtactagttaaattaaatagtgaatgtctaagttgtgtcgtttgatatataagcttgtgctaacaacataaggctttcttggccttcataagatatactcctacctaggagaaagtggtggatgagcattcgtttctgtttttattggtaatgaacatatttacatgttgtattgactgaaaatggtatgctgaagggtcttcgatgcgtctctgtttgggatgctgagtaca
More
|
||||||||||
| CDS seq | atgtttgggcgtgtaccgaggagtaacaacaccaagtactatgaggttcttggagttcctaaaactgcaagcaaggatgagctaaagaaggcataccggaaggctgccataaaaaaccatcctgacaagggaggggatccagaaaagtttaaagaattatcacaagcgtatgaggttctcactgatcctgagaagagagacatatatgaccaatatggggaggatgctcttaaggatggaatgggaggaggcagtgacttccataatccatttgacatatttgagcagtttttcgggggtggtgcctttggggggagtagctcaagagtacgcagacagagacgtggtgaagatgtggtgcatactttgaaggtgtctttagaagatgtgtataatggatctatgaagaaactatcattatcacgaaatattctgtgcccaaagtgcaaaggaaaagggaccaaatctgaggctccagcaacatgctatggttgtcatggtgtaggaatgaggaatataatgcgacagataggactaggcatgattcaacatatgcagactgtctgtcctgaatgcagaggatcaggtgagatcataagtgacagggataaatgcacaaactgcagagctagcaaagttattcaggagaaaaaggtgcttgaggttcatattgagaagggaatgcaacatggccaaaaaattgtattccaaggtgaagctgatgaagctcctgatacagtgacaggagatatagtatttatcttgcaagttaaggtacatccaagatttaagaggaaatatgatgacctgttcattgagcgcacaatctctttaactgaggcattgtgtgggttccaattcatcctcactcatctggacagtaggcagctcctaatcaaggcaaatccaggcgaaattattaaacctggtcaacacaaggccataaatgatgagggaatgccacaccatggccggcctttcatgaagggccgtctctttgtggaattcaatgttgagttccctgaatctggtgtactctcccgtgaccaatgccgggcacttgagatgatcctaccacctaaacctgggcaccaattatcagatatggacctggatcaatgtgaggaaactaccatgcatgatgtgaacatagaagaggagatgaggcgcaagcagtatcaaaggaagcaggaagcgtacgacgaagatgaggaggaggatgctccaagagtacagtgtgctcaacagtaa
More
|
||||||||||
| Protein seq | MFGRVPRSNNTKYYEVLGVPKTASKDELKKAYRKAAIKNHPDKGGDPEKFKELSQAYEVLTDPEKRDIYDQYGEDALKDGMGGGSDFHNPFDIFEQFFGGGAFGGSSSRVRRQRRGEDVVHTLKVSLEDVYNGSMKKLSLSRNILCPKCKGKGTKSEAPATCYGCHGVGMRNIMRQIGLGMIQHMQTVCPECRGSGEIISDRDKCTNCRASKVIQEKKVLEVHIEKGMQHGQKIVFQGEADEAPDTVTGDIVFILQVKVHPRFKRKYDDLFIERTISLTEALCGFQFILTHLDSRQLLIKANPGEIIKPGQHKAINDEGMPHHGRPFMKGRLFVEFNVEFPESGVLSRDQCRALEMILPPKPGHQLSDMDLDQCEETTMHDVNIEEEMRRKQYQRKQEAYDEDEEEDAPRVQCAQQ |
||||||||||
| Function | Chaperone protein dnaJ A6 [UniProtKB/Swiss-Prot:Q0JB88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0021470 | OsNaBo_04g0021470.01 | Chr04 | 27339153 | 27343745 | + | NAM | ||
| CDS seq | atgtttgggcgtgtaccgaggagtaacaacaccaagtactatgaggttcttggagttcctaaaactgcaagcaaggatgagctaaagaaggcataccggaaggctgccataaaaaaccatcctgacaagggaggggatccagaaaagtttaaagaattatcacaagcgtatgaggttctcactgatcctgagaagagagacatatatgaccaatatggggaggatgctcttaaggatggaatgggaggaggcagtgacttccataatccatttgacatatttgagcagtttttcgggggtggtgcctttggggggagtagctcaagagtacgcagacagagacgtggtgaagatgtggtgcatactttgaaggtgtctttagaagatgtgtataatggatctatgaagaaactatcattatcacgaaatattctgtgcccaaagtgcaaaggaaaagggaccaaatctgaggctccagcaacatgctatggttgtcatggtgtaggaatgaggaatataatgcgacagataggactaggcatgattcaacatatgcagactgtctgtcctgaatgcagaggatcaggtgagatcataagtgacagggataaatgcacaaactgcagagctagcaaagttattcaggagaaaaaggtgcttgaggttcatattgagaagggaatgcaacatggccaaaaaattgtattccaaggtgaagctgatgaagctcctgatacagtgacaggagatatagtatttatcttgcaagttaaggtacatccaagatttaagaggaaatatgatgacctgttcattgagcgcacaatctctttaactgaggcattgtgtgggttccaattcatcctcactcatctggacagtaggcagctcctaatcaaggcaaatccaggcgaaattattaaacctggtcaacacaaggccataaatgatgagggaatgccacaccatggccggcctttcatgaagggccgtctctttgtggaattcaatgttgagttccctgaatctggtgtactctcccgtgaccaatgccgggcacttgagatgatcctaccacctaaacctgggcaccaattatcagatatggacctggatcaatgtgaggaaactaccatgcatgatgtgaacatagaagaggagatgaggcgcaagcagtatcaaaggaagcaggaagcgtacgacgaagatgaggaggaggatgctccaagagtacagtgtgctcaacagtaa
More
|
|||||||
| Protein seq | MFGRVPRSNNTKYYEVLGVPKTASKDELKKAYRKAAIKNHPDKGGDPEKFKELSQAYEVLTDPEKRDIYDQYGEDALKDGMGGGSDFHNPFDIFEQFFGGGAFGGSSSRVRRQRRGEDVVHTLKVSLEDVYNGSMKKLSLSRNILCPKCKGKGTKSEAPATCYGCHGVGMRNIMRQIGLGMIQHMQTVCPECRGSGEIISDRDKCTNCRASKVIQEKKVLEVHIEKGMQHGQKIVFQGEADEAPDTVTGDIVFILQVKVHPRFKRKYDDLFIERTISLTEALCGFQFILTHLDSRQLLIKANPGEIIKPGQHKAINDEGMPHHGRPFMKGRLFVEFNVEFPESGVLSRDQCRALEMILPPKPGHQLSDMDLDQCEETTMHDVNIEEEMRRKQYQRKQEAYDEDEEEDAPRVQCAQQ
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0021470 | OsNaBo_04g0021470.02 | Chr04 | 27339153 | 27343745 | + | NAM | ||
| CDS seq | atgtttgggcgtgtaccgaggagtaacaacaccaagtactatgaggttcttggagttcctaaaactgcaagcaaggatgagctaaagaaggcataccggaaggctgccataaaaaaccatcctgacaagggaggggatccagaaaagtttaaagaattatcacaagcgtatgaggttctcactgatcctgagaagagagacatatatgaccaatatggggaggatgctcttaaggatggaatgggaggaggcagtgacttccataatccatttgacatatttgagcagtttttcgggggtggtgcctttggggggagtagctcaagagtacgcagacagagacgtggtgaagatgtggtgcatactttgaaggtgtctttagaagatgtgtataatggatctatgaagaaactatcattatcacgaaatattctgtgcccaaagtgcaaaggaaaagggaccaaatctgaggctccagcaacatgctatggttgtcatggtgtaggaatgaggaatataatgcgacagataggactaggcatgattcaacatatgcagactgtctgtcctgaatgcagaggatcagtgacagggataaatgcacaaactgcagagctagcaaagttattcaggagaaaaaggtgcttgaggttcatattgagaagggaatgcaacatggccaaaaaattgtattccaagcctgatacagtgacaggagatatagtatttatcttgcaagttaaggtacatccaagatttaagaggaaatatgatgacctgttcattgagcgcacaatctctttaactgaggcattgtgtgggttccaattcatcctcactcatctggacagtaggcagctcctaatcaaggcaaatccaggcgaaattattaaacctggtcaacacaaggccataaatgatgagggaatgccacaccatggccggcctttcatgaagggccgtctctttgtggaattcaatgttgagttccctgaatctggtgtactctcccgtgaccaatgccgggcacttgagatgatcctaccacctaaacctgggcaccaattatcagatatggacctggatcaatgtgaggaaactaccatgcatgatgtgaacatagaagaggagatgaggcgcaagcagtatcaaaggaagcaggaagcgtacgacgaagatgaggaggaggatgctccaagagtacagtgtgctcaacagtaa
More
|
|||||||
| Protein seq | MFGRVPRSNNTKYYEVLGVPKTASKDELKKAYRKAAIKNHPDKGGDPEKFKELSQAYEVLTDPEKRDIYDQYGEDALKDGMGGGSDFHNPFDIFEQFFGGGAFGGSSSRVRRQRRGEDVVHTLKVSLEDVYNGSMKKLSLSRNILCPKCKGKGTKSEAPATCYGCHGVGMRNIMRQIGLGMIQHMQTVCPECRGSVTGINAQTAELAKLFRRKRCLRFILRRECNMAKKLYSKPDTVTGDIVFILQVKVHPRFKRKYDDLFIERTISLTEALCGFQFILTHLDSRQLLIKANPGEIIKPGQHKAINDEGMPHHGRPFMKGRLFVEFNVEFPESGVLSRDQCRALEMILPPKPGHQLSDMDLDQCEETTMHDVNIEEEMRRKQYQRKQEAYDEDEEEDAPRVQCAQQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 27342406 | 27342519 | + | OsNaBo_04g0021470.01 | OsNaBo_04g0021470.02,OsNaBo_04g0021470.01 | All |
| A5 | Chr04 | 27342631 | 27342786 | + | OsNaBo_04g0021470.01 | OsNaBo_04g0021470.02,OsNaBo_04g0021470.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 33.719158 | 130.337601 | 151.927002 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0549600 | RBH | 21.424591 | 17.743742 | 120.471420 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g46390 | RBH | 13.909827 | 11.346310 | 27.106821 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0549600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022100 | RBH | 28.791008 | 87.755119 | 128.405975 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0022840 | RBH | 8.681085 | 7.995203 | 50.293095 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022560 | RBH | 58.975628 | 38.164558 | 146.562515 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0022310 | RBH | 8.755523 | 0.977868 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022470 | RBH | 97.754585 | 43.477955 | 335.642151 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0433600 | SBH | 37.6964645 | 100.3062175 | 47.92621 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021290 | RBH | 8.948435 | 3.254234 | 22.286716 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0434000 | SBH | 57.7979965 | 116.9100265 | 41.744154 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0021790 | RBH | 2.211982 | 0.397482 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021620 | RBH | 4.313240 | 16.091450 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021710 | RBH | 89.301353 | 64.986984 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022130 | RBH | 8.735894 | 2.286222 | 17.414707 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0022310 | RBH | 11.420991 | 7.583427 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021540 | RBH | 9.488891 | 8.132579 | 41.841885 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0027320 | RBH | 4.305673 | 84.150909 | 60.705082 |
