Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0016290 | OGI:04071670 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:23314434-23316416 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAAATTGGGTGAAGGTTTTTTTATCAAGAAATCGATATTCAAAATCATTCCATTCGGAATTCTTTGCTTTCTTAAAGCGTCGGACTTCTAAATTCTCATAAGGGCCCCCAGGAATTTTTTCTACATCCTGTTGAATAATTTTGATTGATTCCCTCATTTCACCGATTCGTACTAAATAGCGTGCTAATGAATCCCCTTGTTTTTGCCATTGGACTTTCCAATCGAATTGATTGTAAGACTCGTAAAGATCAACTTTACGAAGATCCCATTGTATTCCAGAAGCTCGTAACATGGGGCCCGATAAGCCCCAATTTACAGCTTCTTCTCCTCTAATAAAACCAACTCCCTCAACTCGTTCCAAAAAAATGGggGATTCTGTGTAATAAGTTGTTGATATTCAATAACTCCTCGTAAAAAATAATCACAGAAATCTAAACATTTATCGATCCATCCATAAGGCAGATCGGCAGCAACTCCTCCGATGCGAAAGTAATTATGCATCATTCGCATACCTGTAGCAGCTTCAAATAGATCATATATTAATTCTCTCTCTCTAAAAATATAAAAAAAAGGAGTCTGCGCACCGAGATCTGCCATAAAAGGTCCAAGCCATAACAAGTGAGAAGCTATACGGCTCAATTCTAACATAATTACCCAATATAGCTGGCTCTTTGGGGTATTTGAATATTCTCCAAGAATTCTGGTGCATTTACCGTTATTGCTTCTGTAAACATAGTAGCTAAATAATCCCAACGTGTTACATAAGGTAAGTATTGTATAATAGTTCGGTTTTCCGCGATTTTTTCCATTCCTCTGTGTAAATAGCCTAATATGGGTTCACAATCAATAACATCTTCACCATCGAGAGTAACGATCAGTCGAAGAACACCATGCATTGATGGGTGCTGAGGGCCCATATTGACTATCATGAGATCTTTTCTTGTAAGCGGTAGACTCATATCCTTTATTCCTTAATTCATTATTCCATGAAAATGGATTATTCCATGAATTCCTCAAAACGAGGCCATCAAAATGCAAAATCTAAGACTACTATAAGACTACTAATAAAATAAGAAAAAAAATTCGAACGATGAAATTACCGCTCCCTAATATCCAACTGACTGATTAATTTCTTATAACGTACTCTATTTTTCTTTGCCAAATAAGCCAGCAAACGTTGACGTTTTCCCAAAAGTCTTCGGAGACCTCTTTCCGATGAAAAATCTTTTTTGTGTAATTCCAAATGTGAAGCAAGTCTCCGTATCTTATTGGTGAAACTGAATACTTGAAATTCAACAGAACCCCAGTTTTCTTCTTTTTCTTCTTTAACCATAAATCCAAAAATTTTTCTACCTCCTTTATTTTTCATGTATTTTTCTGATCAGGAAAAATAAAAAATTATGTTAGTTATTTTGAAGTTATTCTAATCTCGTACACACAAAAATTTGCAATTATTCATCTACTACTGGAATTTGGATTTATTTTATCGATGCAAATTGGATTTGGATAGAAGGGTACATTCTTTTATTTTAGATAGAAGAAAAGTTTCTTCTATCTAAAATAAAAGAATTTTGCTGATTTATTTATTGCTATATCCAATTTATGGAATTGATACACCGTTTAATTGATATCATTTAGCAAAATGAAACATAGCATATGCATCCATCTTTCGGCTCAAGAATTTCACGAGATAGAGATATGGTATAAAAAATAGGCTATTAAGTAACTCTAAATGAATTATGGATACATCTGTATCCTTAACATACTGAAACAACTGCCATTATTCGTATCAAACCAATAGCGATTCATACAAGTTAAATCTTCTAATCAATGGTGGGCCAATAATGAATTTTTTTGCATATGTATTAAGACGCTTGGCCTGATTTCGAAATTGTCCAGAGTTTTTTATGTAGTTTTCATTGCAAAATGATGGATCTCCTTCCGTAACTTTCCAATTACGAGTACGAGAATTGAAAGACAT
More
|
||||||||||
| CDS seq | ATGAGTCTACCGCTTACAAGAAAAGATCTCATGATAGTCAATATGGGCCCTCAGCACCCATCAATGCATGGTGTTCTTCGACTGATCGTTACTCTCGATGGTGAAGATGTTATTGATTGTGAACCCATATTAGGCTATTTACACAGAGGAATGGAAAAAATCGCGGAAAACCGAACTATTATACAATACTTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAACGGTAAATGCACCAGAATTCTTGGAGAATATTCAAATACCCCAAAGAGCCAGCTATATTGGAGAGAGAGAATTAATATATGATCTATTTGAAGCTGCTACAGAATCccCCATTTTTTTGGAACGAGTTGAGGGAGTTGGTTTTATTAGAGGAGAAGAAGCTGTAAATTGGGGCTTATCGGGCCCCATGTTACGAGCTTCTGGAATACAATGGGATCTTCGTAAAGTTGATCTTTACGAGTCTTACAATCAATTCGATTGGAAAGTCCAATGGCAAAAACAAGGGGATTCATTAGCACGCTATTTAGTACGAATCGGTGAAATGAGGGAATCAATCAAAATTATTCAACAGGATGTAGAAAAAATTCCTGGGGGCCCTTATGAGAATTTAGAAGTCCGACGCTTTAAGAAAGCAAAGAATTCCGAATGGAATGATTTTGAATATCGATTTCTTGATAAAAAAACCTTCACCCAATTTTGA
More
|
||||||||||
| Protein seq | MSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIGERELIYDLFEAATESPIFLERVEGVGFIRGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQFDWKVQWQKQGDSLARYLVRIGEMRESIKIIQQDVEKIPGGPYENLEVRRFKKAKNSEWNDFEYRFLDKKTFTQF |
||||||||||
| Function | NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [UniProtKB/Swiss-Prot:P0C337] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0016290 | OsNaBo_04g0016290.01 | Chr04 | 23314434 | 23316416 | - | NAM | ||
| CDS seq | ATGAGTCTACCGCTTACAAGAAAAGATCTCATGATAGTCAATATGGGCCCTCAGCACCCATCAATGCATGGTGTTCTTCGACTGATCGTTACTCTCGATGGTGAAGATGTTATTGATTGTGAACCCATATTAGGCTATTTACACAGAGGAATGGAAAAAATCGCGGAAAACCGAACTATTATACAATACTTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAACGGTAAATGCACCAGAATTCTTGGAGAATATTCAAATACCCCAAAGAGCCAGCTATATTGGAGAGAGAGAATTAATATATGATCTATTTGAAGCTGCTACAGAATCccCCATTTTTTTGGAACGAGTTGAGGGAGTTGGTTTTATTAGAGGAGAAGAAGCTGTAAATTGGGGCTTATCGGGCCCCATGTTACGAGCTTCTGGAATACAATGGGATCTTCGTAAAGTTGATCTTTACGAGTCTTACAATCAATTCGATTGGAAAGTCCAATGGCAAAAACAAGGGGATTCATTAGCACGCTATTTAGTACGAATCGGTGAAATGAGGGAATCAATCAAAATTATTCAACAGGATGTAGAAAAAATTCCTGGGGGCCCTTATGAGAATTTAGAAGTCCGACGCTTTAAGAAAGCAAAGAATTCCGAATGGAATGATTTTGAATATCGATTTCTTGATAAAAAAACCTTCACCCAATTTTGA
More
|
|||||||
| Protein seq | MSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIGERELIYDLFEAATESPIFLERVEGVGFIRGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQFDWKVQWQKQGDSLARYLVRIGEMRESIKIIQQDVEKIPGGPYENLEVRRFKKAKNSEWNDFEYRFLDKKTFTQF
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.577531 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16732 | SBH | 41.371002 | 39.371120 | 5.667976 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016770 | RBH | 1.539027 | 0.000000 | 2.548462 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0017520 | RBH | 1.434488 | 0.000000 | 1.143250 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017250 | RBH | 1.739343 | 0.000000 | 1.101989 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016970 | RBH | 1.745644 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017220 | RBH | 205.708618 | 15.102688 | 179.990768 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0016010 | RBH | 0.131589 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0366700 | RBH | 107.0539475 | 5.1701395 | 12.38464 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0016580 | RBH | 11.675015 | 0.350017 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016440 | RBH | 40.203274 | 25.296263 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016440 | RBH | 90.632393 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016950 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017030 | RBH | 42.418522 | 20.548780 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016240 | RBH | 1.434647 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004700 | SBH | 199.033234 | 82.940857 | 178.329147 |
