Basic Info
Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_04g0012870 OGI:04056480 | 16/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr04:20538070-20544399
Gene Symbol -
DNA seq

ccatttcatcaaattttcgtttgtggatttgcatcggagttgccccatgttcgttgggggtacttcagaaatggcctcaggcccattacatggcccataaccattagcatcgcactttctccctatttgctctcatctcgttccttttccttctttccagagcgaggctgtttgccgctgcagcgccggcggctcaataaaccccagaacccccttctctcgccgccgcgccgccgcgccgccgccccaatggcggtggacaaatctggcggcggcggaggcggaggcggcgcctcctcctcctcgtcgggcgtcgccgcctccaccatggaccgcttccacaagatcgtcctcagctgggactacgtccgcctcgtcgcggactccaaggtacgcccctccccgccccgccccgagcgctcgctttgcaatcaccggcaccatggaccacctttgaaTtttttttctatatggcggcttgggaggacagggcgggcagcagcaggcgaaggggctggggcgcgtgaagaacacgtacgcctcggtggccgagtacctcgctgtgttcgagccgctgctgttcgaggaggtgaaggcgcagatcgtccaggggcgcagcgacgaggaggaaggtgggtgggtgggtggcgcgcccgatttcgtgttgcccccccaatttgctgtcggtttatttaacagtgtgtgtgtgtgttgtttttctctcccttgcgtttctgtgtgggcagaggctgggcaggactggcagaaggggattgtggcgtcgtgcaccgagtcggaggggttccacaaggtgtccatggccgtgcttgatgatttccgggagatggtgtcggagaacgatctcctgctgctgtccaaagagaaagtaagtgctttagcaccttagtggtgtgataggaaatgtttcaaaaggtatagatggctacagaatttagtggaacatatagcgtgtcaagaactcaagacaatgttagttacttatctgcgctcctacatttggaagggctatggggaacttgagacataatttcaccagaaaaagtgctttccatggttttagataatatgccaggctagcaaaatgctccatcgattctatgcgatctctcttcaagaaagaagttatgattgaaaattcatcacattgatatatatctgcacttttgtagtttgaagagggagtgacccccagtgcatatgcctttgccttagtggaacagcggggtggcagagaaacgatttctctaaggacatttgtggcaggtgaaataaaaaatcttaatgtagcaaagcctgtgagctgttctaggctgcagcgtattgcttccattttttcaactacagagagcttcctctggattttaaaggtgagtttcaactgctaataaagaatgcctgagttttcatgcttgcataattcattgacaacacatatgaatatgctattttcttttatggttaaaattgtcagatttgcagcttgtctaccataatgcgagaattctcgggcatgcactctgtagcatcacttccttttaaggatctgattctttcagctagtgagaagaacagtggtgggaatgaccaaaaccgtgcttggaatgtccctgagccacttatggattatcttaaaacaaaccttaatgattcacaactagatgcagtcaacgtgagcattattcttaatatccttttttgttgctcaatttagttctaagaaaaatcagatgtctgattgatcaatgcattatctcttgcaggcaggtctttctcgcagatcctttgttcttatccaggtttgtttgcttatttccagttatatttgtttatttttcagtattatttatcattaacctattttagagaaatgctagtgccttgagaactagagtatatgcagctacatgtgctctacttgttgtcacatgccattcatatagaactccaatgtatatttgtaggggcccccaggaacaggaaaaacacaaactatccttggactcctcagtgctgttctccattctgctcctgcaagaatgcaaaccaagtaatatcttcacctgtgtatatttattactgagtgaaatgtagactagtatctttctgttatggagaggagaaaccttgatatataaaaaaagagatattagaagctaaaacataaatataagtgttcaatacagtttccaaaagctacatgtatctgacatgatttacgttcttgtcatgcagaggtggttttgatgttaaaaaacacggtccagagcttgatattgagggcaagtatgttaatgaattggactcttttcaattgcttcatcctcagctaattttcttgttttgtccatttcttctgcttgcttttttcctcctttaaacaagttctctatggtgtttggaaataacaaattcaccttactttatggtacttctcttagtgtttgttagagggagaagattgtagctatttttacatttgtactatcatatttagtgatcactcagcatgtggattttatatgtagtatgggaactgataaagaaattcttttcagtgtatttttttcttttcttactctgtggaattatgcagttcctttatttgctacataatactgctgcaaatatctgttgcactatcttactgcagagctcatgtgataggcatgcacactggatgaaggcctccccgtggctgattggtgtaaatcctcgagatttaattatgcctgttgacggcgatgatggtttttatcctactgggaatgagctagtaagcttctgtgctctgtactttgctatatttgccatgatgcctgtatgaattttgtatttttgttacatggtatacacctgtcttgatagaaacctgaggtcgtaagttccaatcgcaagtatcgggcccatgtcttggtctgtgctccatccaactcagcacttgatgagattgtgctgcgagttctgcaaacaggtaaaggggtttctgtgctgactgatccaattcagaaaaatgttctgacaataaaaatactctttcaattgcatccatgtgctacaaactaaacaacatttcttaggctcatctggtcactaatttattgatcggaaaatcaatcatctaaattattattcttcttcctttcaggaatacgcgatgaaaataacaacacctataatcctaagattgtgcgaattggactgaaggcgcatcactctgttaaagcagtttccatggattaccttgtacgtgattttagttgctaagtattttctgtccaactcaattacagtgagttgataagttgatatctttgcagatacaacaaaaactttctggtgtggatcgctcatcagatggtgggagacgaggggctggtgaatatgatcgaattagatcttccattcttgatgaagcagccatcgtacattcattttcttatttcacattcttttgcttatttcagtattccaggaatcatttaatatttgattctgactgtcaagcaaaatttgtaggtgttttctacgctaagttttagtggatcatccattttcagcaggatggctcgtgcttttgatgttgttataattgatgaagctgcacaagctgtgagtgtttgctttatacagattgttacacgatggagcatttagccactctcagatttagataatggtattttatgagtttctgactttctgttatgttgaaattctgaagtttggcatatccccttcttttttcaggtagaaccagcaactcttatacccttgatccatgggtgcaaacaagtttttcttgtatgacatccacctatctacgatttatgttgcccttctcttcaactatgagccttatctttatgccttaccattttgtcattataataccttgttaattcgctcagcaaagaaatcatacatgggcatggcacttttaaatttattttgctggagtacacagagatctttcactagcttagatttgattctctgaccatgtgttttcatttctcagtgcgtctgcacacactgtttctctagataccctgatacatgaagctttcatctgagctgattgtgatctcatatctaactatttctgttaatattttgtcaggttggtgacccagttcagttgcctgcaactgtaatttcatctactgctcagaagttagggtaagatctctctctctctctctctctgttctatacatactctggatgtaaggttttacaacattctaaataatactaatgtatccattaggtacggtactagtttgttcaagagatttcaggctgcgggttttcctgtgcaaatgctcaaaattcagtatcgcatgcacccagaggtaatattgcctaaattcatttaaaagatggagactggagtcgttttcttattttattaatccactaaaaaacagattagtatattcccctcaaaagaattctacgaaggtgtcctagaagacggggagggactcagcaagaaacgtccatggcattcctacagctgtttcggcccattctgcttctttgatgtggatgggactgagtcccaaccatctggaagtggttcatgggtgaatgaggatgaagtggaattcataaccctcttatatcatcaaatggctatgcgctatccagaactcaaatctagttcccaggtagctgtcatatcaccatacaggcatcaggtgaagctcttgaaggaccattttcggtcgaccttcggtgatcagtctaaggaagtgatagacgtaaatacagttgatggattccaggtttgttttgcatgcaaatgcagacctgctgtatatgtagatttgtagcaaatcacagtgattataacttttgtaatgtttgttcttgatgctcacatataggggcgtgaaaaggaagtagtcattttctcatgtgttcggtgcaataaggaacaaaagattgggttcgtttctgattttcgacgaatgaatgtcgccatcacaagagctaggtctgctgtactagtaagtaatctatgcaaactccaatccttacatgtcataccaatttctgcatgatttgcagtcaagcagtaccgtcttttgcataatacacagcggatatgcacttatatgagtacagaggcatgtttttactcaataatggagagttttgcatcctagtgaagtgtgtacaaatcaaggagcatctctctcatacagtactgctcagcatgctagttcaaggtggctgctgcaatttttgttctgtcatgtgaggttttatcttacgttcataatgtaaagtctctttctgagattggtgagctgtgcaatatgtaactttcttggattccatccattgcacaggggctagtaaaagtaaatcatagactggatatctggtcaatcagttgtttctggctatatcactatttgcttatgtagttaactttgttggtttagttatcaatccaaataatacttgtcataccacaggttgtaggttctgcttcaacattgaagggagataaacactggaacaaccttgttgagagtgcaaaagagcggggtcgctatttccaggtttgattgctgccaccttttccttttgttcaaagcataggaagtaaacacttgaatgaatctaactatgagcaccttgtaggttccgaagccattcaccgcattctttgtggatgataagctgaaaaccatgaaagtggagagagctcctccggagctgaggactgtgcaagcattggaagcaataaacaaagcagttgtagggcaagaactcatggatgtcgacgatgctggcgaccaagaggatgaagggtatgatgatgatcccgtggaggctgatgatggtggcggcgatgactaaccattcactaccacatagaggtatgtagaagagcaacatttgtttaggtggacttggatgctggaccccagccacagccagggcctttagttgagccttcgaattacaaattcagtgccgtgattctttgctatttcgggtgcgagaggtggctgaatgcctgagttcatagttgcaggcatagctacatcttatgttttaagttatgtatgtatacaaagccccttgcaccaaaagagctgaaaactgctcaactggctttaatttgtctgcggctataattttgcacggcagttgtgcatattgttccaaaaaaagaagtgttgctctaggctgtggcagtctgatggcattttctttggtgttcgtaggtaagtgtgtaaccagtgatttatctcatctttcttttacatggggtacttgcagttgtcg

More
CDS seq

atggcggtggacaaatctggcggcggcggaggcggaggcggcgcctcctcctcctcgtcgggcgtcgccgcctccaccatggaccgcttccacaagatcgtcctcagctgggactacgtccgcctcgtcgcggactccaagggcgggcagcagcaggcgaaggggctggggcgcgtgaagaacacgtacgcctcggtggccgagtacctcgctgtgttcgagccgctgctgttcgaggaggtgaaggcgcagatcgtccaggggcgcagcgacgaggaggaagaggctgggcaggactggcagaaggggattgtggcgtcgtgcaccgagtcggaggggttccacaaggtgtccatggccgtgcttgatgatttccgggagatggtgtcggagaacgatctcctgctgctgtccaaagagaaatttgaagagggagtgacccccagtgcatatgcctttgccttagtggaacagcggggtggcagagaaacgatttctctaaggacatttgtggcaggtgaaataaaaaatcttaatgtagcaaagcctgtgagctgttctaggctgcagcgtattgcttccattttttcaactacagagagcttcctctggattttaaagatttgcagcttgtctaccataatgcgagaattctcgggcatgcactctgtagcatcacttccttttaaggatctgattctttcagctagtgagaagaacagtggtgggaatgaccaaaaccgtgcttggaatgtccctgagccacttatggattatcttaaaacaaaccttaatgattcacaactagatgcagtcaacgcaggtctttctcgcagatcctttgttcttatccaggggcccccaggaacaggaaaaacacaaactatccttggactcctcagtgctgttctccattctgctcctgcaagaatgcaaaccaaaggtggttttgatgttaaaaaacacggtccagagcttgatattgagggcaagcatgcacactggatgaaggcctccccgtggctgattggtgtaaatcctcgagatttaattatgcctgttgacggcgatgatggtttttatcctactgggaatgagctaaaacctgaggtcgtaagttccaatcgcaagtatcgggcccatgtcttggtctgtgctccatccaactcagcacttgatgagattgtgctgcgagttctgcaaacaggaatacgcgatgaaaataacaacacctataatcctaagattgtgcgaattggactgaaggcgcatcactctgttaaagcagtttccatggattaccttatacaacaaaaactttctggtgtggatcgctcatcagatggtgggagacgaggggctggtgaatatgatcgaattagatcttccattcttgatgaagcagccatctattccaggaatcatttaatatttgattctgactgtcaagcaaaatttgtaggtgttttctacgctaatggatcatccattttcagcaggatggctcgtgcttttgatgttgttataattgatgaagctgcacaagctgtagaaccagcaactcttatacccttgatccatgggtgcaaacaagttggtgacccagttcagttgcctgcaactgtaatttcatctactgctcagaagttagggtacggtactagtttgttcaagagatttcaggctgcgggttttcctgtgcaaatgctcaaaattcagtatcgcatgcacccagagattagtatattcccctcaaaagaattctacgaaggtgtcctagaagacggggagggactcagcaagaaacgtccatggcattcctacagctgtttcggcccattctgcttctttgatgtggatgggactgagtcccaaccatctggaagtggttcatgggtgaatgaggatgaagtggaattcataaccctcttatatcatcaaatggctatgcgctatccagaactcaaatctagttcccaggtagctgtcatatcaccatacaggcatcaggtgaagctcttgaaggaccattttcggtcgaccttcggtgatcagtctaaggaagtgatagacgtaaatacagttgatggattccaggggcgtgaaaaggaagtagtcattttctcatgtgttcggtgcaataaggaacaaaagattgggttcgtttctgattttcgacgaatgaatgtcgccatcacaagagctaggtctgctgtactagttgtaggttctgcttcaacattgaagggagataaacactggaacaaccttgttgagagtgcaaaagagcggggtcgctatttccaggttccgaagccattcaccgcattctttgtggatgataagctgaaaaccatgaaagtggagagagctcctccggagctgaggactgtgcaagcattggaagcaataaacaaagcagttgtagggcaagaactcatggatgtcgacgatgctggcgaccaagaggatgaagggtatgatgatgatcccgtggaggctgatgatggtggcggcgatgactaa

More
Protein seq

MAVDKSGGGGGGGGASSSSSGVAASTMDRFHKIVLSWDYVRLVADSKGGQQQAKGLGRVKNTYASVAEYLAVFEPLLFEEVKAQIVQGRSDEEEEAGQDWQKGIVASCTESEGFHKVSMAVLDDFREMVSENDLLLLSKEKFEEGVTPSAYAFALVEQRGGRETISLRTFVAGEIKNLNVAKPVSCSRLQRIASIFSTTESFLWILKICSLSTIMREFSGMHSVASLPFKDLILSASEKNSGGNDQNRAWNVPEPLMDYLKTNLNDSQLDAVNAGLSRRSFVLIQGPPGTGKTQTILGLLSAVLHSAPARMQTKGGFDVKKHGPELDIEGKHAHWMKASPWLIGVNPRDLIMPVDGDDGFYPTGNELKPEVVSSNRKYRAHVLVCAPSNSALDEIVLRVLQTGIRDENNNTYNPKIVRIGLKAHHSVKAVSMDYLIQQKLSGVDRSSDGGRRGAGEYDRIRSSILDEAAIYSRNHLIFDSDCQAKFVGVFYANGSSIFSRMARAFDVVIIDEAAQAVEPATLIPLIHGCKQVGDPVQLPATVISSTAQKLGYGTSLFKRFQAAGFPVQMLKIQYRMHPEISIFPSKEFYEGVLEDGEGLSKKRPWHSYSCFGPFCFFDVDGTESQPSGSGSWVNEDEVEFITLLYHQMAMRYPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQSKEVIDVNTVDGFQGREKEVVIFSCVRCNKEQKIGFVSDFRRMNVAITRARSAVLVVGSASTLKGDKHWNNLVESAKERGRYFQVPKPFTAFFVDDKLKTMKVERAPPELRTVQALEAINKAVVGQELMDVDDAGDQEDEGYDDDPVEADDGGGDD
Function Probable helicase MAGATAMA 3 [UniProtKB/Swiss-Prot:B6SFA4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_04g0012870 OsNaBo_04g0012870.01 Chr04 20538070 20544399 + NAM
CDS seq

atggcggtggacaaatctggcggcggcggaggcggaggcggcgcctcctcctcctcgtcgggcgtcgccgcctccaccatggaccgcttccacaagatcgtcctcagctgggactacgtccgcctcgtcgcggactccaagggcgggcagcagcaggcgaaggggctggggcgcgtgaagaacacgtacgcctcggtggccgagtacctcgctgtgttcgagccgctgctgttcgaggaggtgaaggcgcagatcgtccaggggcgcagcgacgaggaggaagaggctgggcaggactggcagaaggggattgtggcgtcgtgcaccgagtcggaggggttccacaaggtgtccatggccgtgcttgatgatttccgggagatggtgtcggagaacgatctcctgctgctgtccaaagagaaatttgaagagggagtgacccccagtgcatatgcctttgccttagtggaacagcggggtggcagagaaacgatttctctaaggacatttgtggcaggtgaaataaaaaatcttaatgtagcaaagcctgtgagctgttctaggctgcagcgtattgcttccattttttcaactacagagagcttcctctggattttaaagatttgcagcttgtctaccataatgcgagaattctcgggcatgcactctgtagcatcacttccttttaaggatctgattctttcagctagtgagaagaacagtggtgggaatgaccaaaaccgtgcttggaatgtccctgagccacttatggattatcttaaaacaaaccttaatgattcacaactagatgcagtcaacgcaggtctttctcgcagatcctttgttcttatccaggggcccccaggaacaggaaaaacacaaactatccttggactcctcagtgctgttctccattctgctcctgcaagaatgcaaaccaaaggtggttttgatgttaaaaaacacggtccagagcttgatattgagggcaagcatgcacactggatgaaggcctccccgtggctgattggtgtaaatcctcgagatttaattatgcctgttgacggcgatgatggtttttatcctactgggaatgagctaaaacctgaggtcgtaagttccaatcgcaagtatcgggcccatgtcttggtctgtgctccatccaactcagcacttgatgagattgtgctgcgagttctgcaaacaggaatacgcgatgaaaataacaacacctataatcctaagattgtgcgaattggactgaaggcgcatcactctgttaaagcagtttccatggattaccttatacaacaaaaactttctggtgtggatcgctcatcagatggtgggagacgaggggctggtgaatatgatcgaattagatcttccattcttgatgaagcagccatcgtgttttctacgctaagttttagtggatcatccattttcagcaggatggctcgtgcttttgatgttgttataattgatgaagctgcacaagctgtagaaccagcaactcttatacccttgatccatgggtgcaaacaagtttttcttgttggtgacccagttcagttgcctgcaactgtaatttcatctactgctcagaagttagggtacggtactagtttgttcaagagatttcaggctgcgggttttcctgtgcaaatgctcaaaattcagtatcgcatgcacccagagattagtatattcccctcaaaagaattctacgaaggtgtcctagaagacggggagggactcagcaagaaacgtccatggcattcctacagctgtttcggcccattctgcttctttgatgtggatgggactgagtcccaaccatctggaagtggttcatgggtgaatgaggatgaagtggaattcataaccctcttatatcatcaaatggctatgcgctatccagaactcaaatctagttcccaggtagctgtcatatcaccatacaggcatcaggtgaagctcttgaaggaccattttcggtcgaccttcggtgatcagtctaaggaagtgatagacgtaaatacagttgatggattccaggggcgtgaaaaggaagtagtcattttctcatgtgttcggtgcaataaggaacaaaagattgggttcgtttctgattttcgacgaatgaatgtcgccatcacaagagctaggtctgctgtactagttgtaggttctgcttcaacattgaagggagataaacactggaacaaccttgttgagagtgcaaaagagcggggtcgctatttccaggttccgaagccattcaccgcattctttgtggatgataagctgaaaaccatgaaagtggagagagctcctccggagctgaggactgtgcaagcattggaagcaataaacaaagcagttgtagggcaagaactcatggatgtcgacgatgctggcgaccaagaggatgaagggtatgatgatgatcccgtggaggctgatgatggtggcggcgatgactaa

More
Protein seq

MAVDKSGGGGGGGGASSSSSGVAASTMDRFHKIVLSWDYVRLVADSKGGQQQAKGLGRVKNTYASVAEYLAVFEPLLFEEVKAQIVQGRSDEEEEAGQDWQKGIVASCTESEGFHKVSMAVLDDFREMVSENDLLLLSKEKFEEGVTPSAYAFALVEQRGGRETISLRTFVAGEIKNLNVAKPVSCSRLQRIASIFSTTESFLWILKICSLSTIMREFSGMHSVASLPFKDLILSASEKNSGGNDQNRAWNVPEPLMDYLKTNLNDSQLDAVNAGLSRRSFVLIQGPPGTGKTQTILGLLSAVLHSAPARMQTKGGFDVKKHGPELDIEGKHAHWMKASPWLIGVNPRDLIMPVDGDDGFYPTGNELKPEVVSSNRKYRAHVLVCAPSNSALDEIVLRVLQTGIRDENNNTYNPKIVRIGLKAHHSVKAVSMDYLIQQKLSGVDRSSDGGRRGAGEYDRIRSSILDEAAIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVEPATLIPLIHGCKQVFLVGDPVQLPATVISSTAQKLGYGTSLFKRFQAAGFPVQMLKIQYRMHPEISIFPSKEFYEGVLEDGEGLSKKRPWHSYSCFGPFCFFDVDGTESQPSGSGSWVNEDEVEFITLLYHQMAMRYPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQSKEVIDVNTVDGFQGREKEVVIFSCVRCNKEQKIGFVSDFRRMNVAITRARSAVLVVGSASTLKGDKHWNNLVESAKERGRYFQVPKPFTAFFVDDKLKTMKVERAPPELRTVQALEAINKAVVGQELMDVDDAGDQEDEGYDDDPVEADDGGGDD

More
Gene Transcript Chromosome Start End Strand Source
OsNaBo_04g0012870 OsNaBo_04g0012870.02 Chr04 20538070 20544277 + NAM
CDS seq

atggcggtggacaaatctggcggcggcggaggcggaggcggcgcctcctcctcctcgtcgggcgtcgccgcctccaccatggaccgcttccacaagatcgtcctcagctgggactacgtccgcctcgtcgcggactccaagggcgggcagcagcaggcgaaggggctggggcgcgtgaagaacacgtacgcctcggtggccgagtacctcgctgtgttcgagccgctgctgttcgaggaggtgaaggcgcagatcgtccaggggcgcagcgacgaggaggaagaggctgggcaggactggcagaaggggattgtggcgtcgtgcaccgagtcggaggggttccacaaggtgtccatggccgtgcttgatgatttccgggagatggtgtcggagaacgatctcctgctgctgtccaaagagaaatttgaagagggagtgacccccagtgcatatgcctttgccttagtggaacagcggggtggcagagaaacgatttctctaaggacatttgtggcaggtgaaataaaaaatcttaatgtagcaaagcctgtgagctgttctaggctgcagcgtattgcttccattttttcaactacagagagcttcctctggattttaaagatttgcagcttgtctaccataatgcgagaattctcgggcatgcactctgtagcatcacttccttttaaggatctgattctttcagctagtgagaagaacagtggtgggaatgaccaaaaccgtgcttggaatgtccctgagccacttatggattatcttaaaacaaaccttaatgattcacaactagatgcagtcaacgcaggtctttctcgcagatcctttgttcttatccaggggcccccaggaacaggaaaaacacaaactatccttggactcctcagtgctgttctccattctgctcctgcaagaatgcaaaccaaaggtggttttgatgttaaaaaacacggtccagagcttgatattgagggcaagcatgcacactggatgaaggcctccccgtggctgattggtgtaaatcctcgagatttaattatgcctgttgacggcgatgatggtttttatcctactgggaatgagctaaaacctgaggtcgtaagttccaatcgcaagtatcgggcccatgtcttggtctgtgctccatccaactcagcacttgatgagattgtgctgcgagttctgcaaacaggaatacgcgatgaaaataacaacacctataatcctaagattgtgcgaattggactgaaggcgcatcactctgttaaagcagtttccatggattaccttatacaacaaaaactttctggtgtggatcgctcatcagatggtgggagacgaggggctggtgaatatgatcgaattagatcttccattcttgatgaagcagccatctattccaggaatcatttaatatttgattctgactgtcaagcaaaatttgtaggtgttttctacgctaatggatcatccattttcagcaggatggctcgtgcttttgatgttgttataattgatgaagctgcacaagctgtagaaccagcaactcttatacccttgatccatgggtgcaaacaagttggtgacccagttcagttgcctgcaactgtaatttcatctactgctcagaagttagggtacggtactagtttgttcaagagatttcaggctgcgggttttcctgtgcaaatgctcaaaattcagtatcgcatgcacccagagattagtatattcccctcaaaagaattctacgaaggtgtcctagaagacggggagggactcagcaagaaacgtccatggcattcctacagctgtttcggcccattctgcttctttgatgtggatgggactgagtcccaaccatctggaagtggttcatgggtgaatgaggatgaagtggaattcataaccctcttatatcatcaaatggctatgcgctatccagaactcaaatctagttcccaggtagctgtcatatcaccatacaggcatcaggtgaagctcttgaaggaccattttcggtcgaccttcggtgatcagtctaaggaagtgatagacgtaaatacagttgatggattccaggggcgtgaaaaggaagtagtcattttctcatgtgttcggtgcaataaggaacaaaagattgggttcgtttctgattttcgacgaatgaatgtcgccatcacaagagctaggtctgctgtactagttgtaggttctgcttcaacattgaagggagataaacactggaacaaccttgttgagagtgcaaaagagcggggtcgctatttccaggttccgaagccattcaccgcattctttgtggatgataagctgaaaaccatgaaagtggagagagctcctccggagctgaggactgtgcaagcattggaagcaataaacaaagcagttgtagggcaagaactcatggatgtcgacgatgctggcgaccaagaggatgaagggtatgatgatgatcccgtggaggctgatgatggtggcggcgatgactaa

More
Protein seq

MAVDKSGGGGGGGGASSSSSGVAASTMDRFHKIVLSWDYVRLVADSKGGQQQAKGLGRVKNTYASVAEYLAVFEPLLFEEVKAQIVQGRSDEEEEAGQDWQKGIVASCTESEGFHKVSMAVLDDFREMVSENDLLLLSKEKFEEGVTPSAYAFALVEQRGGRETISLRTFVAGEIKNLNVAKPVSCSRLQRIASIFSTTESFLWILKICSLSTIMREFSGMHSVASLPFKDLILSASEKNSGGNDQNRAWNVPEPLMDYLKTNLNDSQLDAVNAGLSRRSFVLIQGPPGTGKTQTILGLLSAVLHSAPARMQTKGGFDVKKHGPELDIEGKHAHWMKASPWLIGVNPRDLIMPVDGDDGFYPTGNELKPEVVSSNRKYRAHVLVCAPSNSALDEIVLRVLQTGIRDENNNTYNPKIVRIGLKAHHSVKAVSMDYLIQQKLSGVDRSSDGGRRGAGEYDRIRSSILDEAAIYSRNHLIFDSDCQAKFVGVFYANGSSIFSRMARAFDVVIIDEAAQAVEPATLIPLIHGCKQVGDPVQLPATVISSTAQKLGYGTSLFKRFQAAGFPVQMLKIQYRMHPEISIFPSKEFYEGVLEDGEGLSKKRPWHSYSCFGPFCFFDVDGTESQPSGSGSWVNEDEVEFITLLYHQMAMRYPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQSKEVIDVNTVDGFQGREKEVVIFSCVRCNKEQKIGFVSDFRRMNVAITRARSAVLVVGSASTLKGDKHWNNLVESAKERGRYFQVPKPFTAFFVDDKLKTMKVERAPPELRTVQALEAINKAVVGQELMDVDDAGDQEDEGYDDDPVEADDGGGDD

More
Gene Transcript Chromosome Start End Strand Source
OsNaBo_04g0012870 OsNaBo_04g0012870.03 Chr04 20538070 20544277 + NAM
CDS seq

atggcggtggacaaatctggcggcggcggaggcggaggcggcgcctcctcctcctcgtcgggcgtcgccgcctccaccatggaccgcttccacaagatcgtcctcagctgggactacgtccgcctcgtcgcggactccaagggcgggcagcagcaggcgaaggggctggggcgcgtgaagaacacgtacgcctcggtggccgagtacctcgctgtgttcgagccgctgctgttcgaggaggtgaaggcgcagatcgtccaggggcgcagcgacgaggaggaagaggctgggcaggactggcagaaggggattgtggcgtcgtgcaccgagtcggaggggttccacaaggtgtccatggccgtgcttgatgatttccgggagatggtgtcggagaacgatctcctgctgctgtccaaagagaaatttgaagagggagtgacccccagtgcatatgcctttgccttagtggaacagcggggtggcagagaaacgatttctctaaggacatttgtggcaggtgaaataaaaaatcttaatgtagcaaagcctgtgagctgttctaggctgcagcgtattgcttccattttttcaactacagagagcttcctctggattttaaagatttgcagcttgtctaccataatgcgagaattctcgggcatgcactctgtagcatcacttccttttaaggatctgattctttcagctagtgagaagaacagtggtgggaatgaccaaaaccgtgcttggaatgtccctgagccacttatggattatcttaaaacaaaccttaatgattcacaactagatgcagtcaacgcaggtctttctcgcagatcctttgttcttatccaggggcccccaggaacaggaaaaacacaaactatccttggactcctcagtgctgttctccattctgctcctgcaagaatgcaaaccaaaggtggttttgatgttaaaaaacacggtccagagcttgatattgagggcaagcatgcacactggatgaaggcctccccgtggctgattggtgtaaatcctcgagatttaattatgcctgttgacggcgatgatggtttttatcctactgggaatgagctaaaacctgaggtcgtaagttccaatcgcaagtatcgggcccatgtcttggtctgtgctccatccaactcagcacttgatgagattgtgctgcgagttctgcaaacaggaatacgcgatgaaaataacaacacctataatcctaagattgtgcgaattggactgaaggcgcatcactctgttaaagcagtttccatggattaccttatacaacaaaaactttctggtgtggatcgctcatcagatggtgggagacgaggggctggtgaatatgatcgaattagatcttccattcttgatgaagcagccatcgtgttttctacgctaagttttagtggatcatccattttcagcaggatggctcgtgcttttgatgttgttataattgatgaagctgcacaagctgttggtgacccagttcagttgcctgcaactgtaatttcatctactgctcagaagttagggtacggtactagtttgttcaagagatttcaggctgcgggttttcctgtgcaaatgctcaaaattcagtatcgcatgcacccagagattagtatattcccctcaaaagaattctacgaaggtgtcctagaagacggggagggactcagcaagaaacgtccatggcattcctacagctgtttcggcccattctgcttctttgatgtggatgggactgagtcccaaccatctggaagtggttcatgggtgaatgaggatgaagtggaattcataaccctcttatatcatcaaatggctatgcgctatccagaactcaaatctagttcccaggtagctgtcatatcaccatacaggcatcaggtgaagctcttgaaggaccattttcggtcgaccttcggtgatcagtctaaggaagtgatagacgtaaatacagttgatggattccaggggcgtgaaaaggaagtagtcattttctcatgtgttcggtgcaataaggaacaaaagattgggttcgtttctgattttcgacgaatgaatgtcgccatcacaagagctaggtctgctgtactagttgtaggttctgcttcaacattgaagggagataaacactggaacaaccttgttgagagtgcaaaagagcggggtcgctatttccaggttccgaagccattcaccgcattctttgtggatgataagctgaaaaccatgaaagtggagagagctcctccggagctgaggactgtgcaagcattggaagcaataaacaaagcagttgtagggcaagaactcatggatgtcgacgatgctggcgaccaagaggatgaagggtatgatgatgatcccgtggaggctgatgatggtggcggcgatgactaa

More
Protein seq

MAVDKSGGGGGGGGASSSSSGVAASTMDRFHKIVLSWDYVRLVADSKGGQQQAKGLGRVKNTYASVAEYLAVFEPLLFEEVKAQIVQGRSDEEEEAGQDWQKGIVASCTESEGFHKVSMAVLDDFREMVSENDLLLLSKEKFEEGVTPSAYAFALVEQRGGRETISLRTFVAGEIKNLNVAKPVSCSRLQRIASIFSTTESFLWILKICSLSTIMREFSGMHSVASLPFKDLILSASEKNSGGNDQNRAWNVPEPLMDYLKTNLNDSQLDAVNAGLSRRSFVLIQGPPGTGKTQTILGLLSAVLHSAPARMQTKGGFDVKKHGPELDIEGKHAHWMKASPWLIGVNPRDLIMPVDGDDGFYPTGNELKPEVVSSNRKYRAHVLVCAPSNSALDEIVLRVLQTGIRDENNNTYNPKIVRIGLKAHHSVKAVSMDYLIQQKLSGVDRSSDGGRRGAGEYDRIRSSILDEAAIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVGDPVQLPATVISSTAQKLGYGTSLFKRFQAAGFPVQMLKIQYRMHPEISIFPSKEFYEGVLEDGEGLSKKRPWHSYSCFGPFCFFDVDGTESQPSGSGSWVNEDEVEFITLLYHQMAMRYPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQSKEVIDVNTVDGFQGREKEVVIFSCVRCNKEQKIGFVSDFRRMNVAITRARSAVLVVGSASTLKGDKHWNNLVESAKERGRYFQVPKPFTAFFVDDKLKTMKVERAPPELRTVQALEAINKAVVGQELMDVDDAGDQEDEGYDDDPVEADDGGGDD

More
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr04 20541512 20541607 + OsNaBo_04g0012870.02 OsNaBo_04g0012870.02,OsNaBo_04g0012870.03,OsNaBo_04g0012870.01 All
SE Chr04 20541699 20542211 + OsNaBo_04g0012870.02 OsNaBo_04g0012870.02,OsNaBo_04g0012870.03 All
SE Chr04 20541699 20542211 + OsNaBo_04g0012870.01 OsNaBo_04g0012870.03,OsNaBo_04g0012870.01 All
A5 Chr04 20541882 20542211 + OsNaBo_04g0012870.01 OsNaBo_04g0012870.02,OsNaBo_04g0012870.01 All

Expression

Leaf Root Panicle
FPKM 0.481578 4.377009 1.649101

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0424200 RBH 0.000000 0.000000 0.000000
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g34670 RBH 0.000000 0.000000 0.000000
Nipponbare | IRGSP 1.0 | RAP-db Os04g0424200 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0013340 RBH 0.000000 0.000000 0.000000
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0014170 RBH 0.043152 0.000000 0.249262
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0013940 RBH 0.000000 0.000000 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0013550 RBH 0.000000 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0013880 RBH 0.752994 1.498701 2.231310
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0332300 RBH 0.4444425 2.645657 4.764658
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0012790 RBH 0.050311 0.000000 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0328800 RBH 1.732788 8.823859 10.8719575
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0013360 RBH 0.000000 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0013040 RBH 0.000000 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0013050 RBH 0.000000 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0013620 RBH 0.000000 0.119044 0.061800
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0013800 RBH 0.000000 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G012900 RBH 0.000000 0.666938 0.141891
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_06g0012920 RBH 1.000621 0.000000 0.000000
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.