Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0001240 | OGI:04004940 | 8/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:1494287-1497610 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcaatatagatatccttgcttaatctcatgtggtactcaggtcaatcaagacgccattcatgctgatatgattacaaccccaccctcgaagaaagcaaaaaattcggaatccgaggagcatggagtatccaaagtcagcatgccaaatattgatgtaccatcaaatttgatacgatctatgtttggccagacctacaagtatctccctcaaggtacattattgttttcacatactcccttcattccacaatgtacggcaaaattactttttcaagttgtttcataatataaggcatatatgcatgcatgtcattaactaacacctcttctccattaaaatattattattttaactctctactaagacctctaattttattgggtgcatgcataattatctcttggtctttggtttaagagtggttgtgctttatatataaaactttgtgatatcagaattcatttttttttgttttacagattatgaattaacaaatgaggatgtaatggccatatttttaattgaagattcggctgaaaattgtacactggtggacatgggtcatttttataacaagaaacgtcacttaacgtgccttctctctggagataaatttttgaacgatgatgtaagtaaaactgcctatgatgaagctacgttacaatttaattgccaacatattctttagtaattgcagatttttaattgaatcaacaggtcatcagtgcgtacatacactgtttgagtgagcaagcaaataacgataagaaagtgaaatatgaaaacccgtttctttctgacatgctgaaagcggctggggtcaatggagtaaatgaagatgaagataactttattacaaagatagtgaagaattacctacaccatgaactggtattgtttggctctctatatttgatagtatttaagtttattatttatttatatatatagatataatataatataatatatgtcctaactccatatgtcttgtttagatttttattccaataaatatgaaagattatcattggtatttagcggttgtcaacacagaaaaaaaacagatacaagtacttgattccatgtgtatgacattcaatcgtgctgacctcgcaaatacggttagtgtatatgacatgtgaactctctttttttttaagattgtaattcatttatgtatattgctgactgtaaatatgataattgagcagctacaaggactacaatatcatcttaatattattggacggcaacaggacttgcctagccacaaatggggtgacctcaatgttatcaagtggccaataatagaacaactaaaagaaagaattcaggaagacaggtatactacAAATaaatttttcatgtaatataatattaatataagatgaatgatatatttcaaatggtgtacggttgtttagtttttaatagttgtacttatactttaaaacaatgcagttcttcatgtggactattcatgctcaaacttatggagaattggacaggagaatcactttctcgttctattacacaggtgtgtttcttaatAaaaaaatagttgatcaaatatcttatctatttaaaattaaacaaatttactttttaatgcgcaggaggatattacactttttaggtccaaactagccagtgtattattacgttggaaaacaaataaggccgtcatgacgaccggggaacaaatcgaagataccaaagatagtgatgacgatgttgttatattaggtagtcatcaacggaaattcggctctacaagggacatcaataaaactaaagaagtaaacaaaaaatatagttcactactctctgtagtatctaagatgagtaaacaagagttgataagcggccttctgcactacatccaacagattaattgtgctgaagccatggagtaagccactgcaatgcattgtatacacaatcgtaattcatatatgcattaacttattttctttgattgacaggaaaatatgggtacaaagttcaaggccgcactatattagcttgagtctcaaacagcttcaaacaatactaaagaaggatgagccattggaaagtgattgcttcaacatggctattcgtaagttcatgtatgaaaaaatcgagatgattcataaaactaaagaagcaatatcgaatcattgcttggacttgcaattttgggtaagtttttaaattctaatgctcatgtcattctctattgctcatgttattacctataatcgcaatatcgaatatattgatttatctattgcttatgtaattgaaccattttttaaatcatgtagagtgctactggctttggtaaagacccggtccaccatgacaacataaatcttgtagagaccgtcggtagttggtctctaattcattacaaactttcacagtgcaaagcggtaagatcgctaagataccatcctatatggccgtgttttatatattatcttgacggttgatcttttgtagattcttataccagtacgccatgctcgaagttttatcgtgcttgtagtggaccaagaaagtcaaacgctctatgtgttagacccaaatccacttatgccagaatataaaaataacccaaatatgagatacaccagaaaactgataactatttgtgatcacttcaacaaagctatgagaaaggcatgccctggctctaggtggaatgaagacatcaacttgtggaggcaagtaattgtcaataatccggtttacagcaggtaagttatcttcttaaaagctcgttcaaaccaacaaatttaactgtgtagagaaagggaagctaactcttcaatttccttaggagtttatcgggttttcttgttcatctcttcatgtgtacatggaataataaagaaccacatttgccggcaattaatgtaagtcttgacaggcattaattattcatatattacattattatatatttaccaaaatttaacttattaaatacatgtgcaggatggtgacgagctaaggaaacTttttttgctaaatctactgatgtaccaacaaaatgagtgtgaaagcaacaaccctaacggcgtacaagattttctaaagtgtataaagaattcacaacattagggtagttatttaactatatggaacaacattagggtttaactataatatggagtgatttaatttgaggtgatcatccattagaaatgccgtatctacaaatgctggatgttctatattttttgtttgtgctttatttgtatgatatcatcaaattttcatagatgtcttctatctatgttactttttataatttatgtagtaaacgcc
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| CDS seq | atgcaatatagatatccttgcttaatctcatgtggtactcaggtcaatcaagacgccattcatgctgatatgattacaaccccaccctcgaagaaagcaaaaaattcggaatccgaggagcatggagtatccaaagtcagcatgccaaatattgatgtcatcagtgcgtacatacactgtttgagtgagcaagcaaataacgataagaaagtgaaatatgaaaacccgtttctttctgacatgctgaaagcggctggggtcaatggagtaaatgaagatgaagataactttattacaaagatagtgaagaattacctacaccatgaactgctacaaggactacaatatcatcttaatattattggacggcaacaggacttgcctagccacaaatggggtgacctcaatgttatcaagtggccaataatagaacaactaaaagaaagaattcaggaagacagttcttcatgtggactattcatgctcaaacttatggagaattggacaggagaatcactttctcgttctattacacaggaggatattacactttttaggtccaaactagccagtgtattattacgttggaaaacaaataaggccgtcatgacgaccggggaacaaatcgaagataccaaagatagtgatgacgatgttgttatattaggtagtcatcaacggaaattcggctctacaagggacatcaataaaactaaagaagtaaacaaaaaatatagttcactactctctgtagtatctaagatgagtaaacaagagttgataagcggccttctgcactacatccaacagattaattgtgctgaagccatggagaaaatatgggtacaaagttcaaggccgcactatattagcttgagtctcaaacagcttcaaacaatactaaagaaggatgagccattggaaagtgattgcttcaacatggctattcgtaagttcatgtatgaaaaaatcgagatgattcataaaactaaagaagcaatatcgaatcattgcttggacttgcaattttggagtgctactggctttggtaaagacccggtccaccatgacaacataaatcttgtagagaccgtcggtagttggtctctaattcattacaaactttcacagtgcaaagcgattcttataccagtacgccatgctcgaagttttatcgtgcttgtagtggaccaagaaagtcaaacgctctatgtgttagacccaaatccacttatgccagaatataaaaataacccaaatatgagatacaccagaaaactgataactatttgtgatcacttcaacaaagctatgagaaaggcatgccctggctctaggtggaatgaagacatcaacttgtggaggcaagtaattgtcaataatccggtttacagcaggagtttatcgggttttcttgttcatctcttcatgtgtacatggaataataaagaaccacatttgccggcaattaatgatggtgacgagctaaggaaacTttttttgctaaatctactgatgtaccaacaaaatgagtgtgaaagcaacaaccctaacggcgtacaagattttctaaagtgtataaagaattcacaacattag
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| Protein seq | MQYRYPCLISCGTQVNQDAIHADMITTPPSKKAKNSESEEHGVSKVSMPNIDVISAYIHCLSEQANNDKKVKYENPFLSDMLKAAGVNGVNEDEDNFITKIVKNYLHHELLQGLQYHLNIIGRQQDLPSHKWGDLNVIKWPIIEQLKERIQEDSSSCGLFMLKLMENWTGESLSRSITQEDITLFRSKLASVLLRWKTNKAVMTTGEQIEDTKDSDDDVVILGSHQRKFGSTRDINKTKEVNKKYSSLLSVVSKMSKQELISGLLHYIQQINCAEAMEKIWVQSSRPHYISLSLKQLQTILKKDEPLESDCFNMAIRKFMYEKIEMIHKTKEAISNHCLDLQFWSATGFGKDPVHHDNINLVETVGSWSLIHYKLSQCKAILIPVRHARSFIVLVVDQESQTLYVLDPNPLMPEYKNNPNMRYTRKLITICDHFNKAMRKACPGSRWNEDINLWRQVIVNNPVYSRSLSGFLVHLFMCTWNNKEPHLPAINDGDELRKLFLLNLLMYQQNECESNNPNGVQDFLKCIKNSQH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0001240 | OsNaBo_04g0001240.01 | Chr04 | 1494287 | 1497610 | + | NAM | ||
| CDS seq | atgcaatatagatatccttgcttaatctcatgtggtactcaggtcaatcaagacgccattcatgctgatatgattacaaccccaccctcgaagaaagcaaaaaattcggaatccgaggagcatggagtatccaaagtcagcatgccaaatattgatgtcatcagtgcgtacatacactgtttgagtgagcaagcaaataacgataagaaagtgaaatatgaaaacccgtttctttctgacatgctgaaagcggctggggtcaatggagtaaatgaagatgaagataactttattacaaagatagtgaagaattacctacaccatgaactgctacaaggactacaatatcatcttaatattattggacggcaacaggacttgcctagccacaaatggggtgacctcaatgttatcaagtggccaataatagaacaactaaaagaaagaattcaggaagacagttcttcatgtggactattcatgctcaaacttatggagaattggacaggagaatcactttctcgttctattacacaggaggatattacactttttaggtccaaactagccagtgtattattacgttggaaaacaaataaggccgtcatgacgaccggggaacaaatcgaagataccaaagatagtgatgacgatgttgttatattaggtagtcatcaacggaaattcggctctacaagggacatcaataaaactaaagaagtaaacaaaaaatatagttcactactctctgtagtatctaagatgagtaaacaagagttgataagcggccttctgcactacatccaacagattaattgtgctgaagccatggagaaaatatgggtacaaagttcaaggccgcactatattagcttgagtctcaaacagcttcaaacaatactaaagaaggatgagccattggaaagtgattgcttcaacatggctattcgtaagttcatgtatgaaaaaatcgagatgattcataaaactaaagaagcaatatcgaatcattgcttggacttgcaattttggagtgctactggctttggtaaagacccggtccaccatgacaacataaatcttgtagagaccgtcggtagttggtctctaattcattacaaactttcacagtgcaaagcgattcttataccagtacgccatgctcgaagttttatcgtgcttgtagtggaccaagaaagtcaaacgctctatgtgttagacccaaatccacttatgccagaatataaaaataacccaaatatgagatacaccagaaaactgataactatttgtgatcacttcaacaaagctatgagaaaggcatgccctggctctaggtggaatgaagacatcaacttgtggaggcaagtaattgtcaataatccggtttacagcaggagtttatcgggttttcttgttcatctcttcatgtgtacatggaataataaagaaccacatttgccggcaattaatgatggtgacgagctaaggaaacTttttttgctaaatctactgatgtaccaacaaaatgagtgtgaaagcaacaaccctaacggcgtacaagattttctaaagtgtataaagaattcacaacattag
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| Protein seq | MQYRYPCLISCGTQVNQDAIHADMITTPPSKKAKNSESEEHGVSKVSMPNIDVISAYIHCLSEQANNDKKVKYENPFLSDMLKAAGVNGVNEDEDNFITKIVKNYLHHELLQGLQYHLNIIGRQQDLPSHKWGDLNVIKWPIIEQLKERIQEDSSSCGLFMLKLMENWTGESLSRSITQEDITLFRSKLASVLLRWKTNKAVMTTGEQIEDTKDSDDDVVILGSHQRKFGSTRDINKTKEVNKKYSSLLSVVSKMSKQELISGLLHYIQQINCAEAMEKIWVQSSRPHYISLSLKQLQTILKKDEPLESDCFNMAIRKFMYEKIEMIHKTKEAISNHCLDLQFWSATGFGKDPVHHDNINLVETVGSWSLIHYKLSQCKAILIPVRHARSFIVLVVDQESQTLYVLDPNPLMPEYKNNPNMRYTRKLITICDHFNKAMRKACPGSRWNEDINLWRQVIVNNPVYSRSLSGFLVHLFMCTWNNKEPHLPAINDGDELRKLFLLNLLMYQQNECESNNPNGVQDFLKCIKNSQH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0388600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g22580 | SBH | 3.398391 | 3.051788 | 0.895832 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0388600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0012430 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0001910 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0009300 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0015560 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0015710 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0026700 | RBH | 0.0067415 | 0.0054515 | 0.0052405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0015190 | SBH | 0.0 | 0.063619 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0230800 | SBH | 0.5017505 | 6.5562425 | 1.8041965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0015590 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0015530 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009130 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0034210 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0015320 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001230 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0015020 | RBH | 1.879290 | 15.905820 | 3.792721 |
