Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_10g0388600 OGI:07010130 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr10:12849592-12854148
Gene Symbol -
DNA seq

TTGTTCTCTCAATTTTTTTCCTTCTAATTTTAATCGTACCCATGATATCGGATTTATTCAGTTTCCCGAAGATTGATGGACAAAATAATCGAAGGAAGGAAGAAGCGTGAAACTGCCTCGACTCCTGCGTACCCAGGACACGTGATAAGGCCCATCAACTCATCCAGATTAAGGCCTATATAATATTAGTCAGTCAAGAATCACTTTCGACTTGATTAGGCCCATCAACTCATAAAGATTAAGCCCTATATAAGATAAGCTGGTGCCCTGTTTCCTTGCTAAGTGTTGCCGTGATATTCAGTTTGATCTGCTCGTCGTATCGCCGCCGCACAACTCGCCGAATACCAAGGCTGGTAAACAAGCGCCGCCGCCGTCGCAAAATCCACCGAAACCAGACTACGCGACCACCACACGATGGATGCATCGCCGTCAAATCCGCCCTCGTCGACTCCGCCACATCCGCAGACTCCTCCGCCACTACTGTTGTTGACGACGCCGCCGCCGCCGCCAGTCCCGTCGTCGCCGGCTCCGCCGCCGTCGCCGCCGCTGCCGCCGTCGCCGCCGCCGCCATTGCCGTCGCCGGCTCCTCCTCCGCCGCCCTTGCCGTCATCTTCGGCGCCAAGCAATGTCAGCACAGATATTGATCCTGTAAGTTAAGCACCCAGCTTAATTAGTCCATGAAGACTATCGATACATATATATATATATATATATATATATGTGTGTGTGTGTGTTCTATTGCGATTTGGGTTACTTATAGCAGGCAGTACATTAGCTAGCTAATGTTAATGCATGGTACTGTAGATTAATGCTATACACTGTACGTTACTTGATTATTAATTAAAGCACCTAGCTCGCCATCCACTATTATATTAAAAAATTATTACTTACAAATATGTCAATTGCATTAATATATACTCCTACACTAGCTTGTGCGTAGTGCTCAGGGTTGCTTCTTTACTTATATGAGGAACTCATCTCTCGCACTCGCAAAACCGAGGGACTCATTAACGTATGATTAATTAAATAGTTTTCAATTAGAACAAATAGATTTTTATGGTTTTATAAAATAACTCTAACAACATAACTCAACATAAAATCAACCTGGCCCTCAGCTTATTTTACAAATAATATATAATACTCTGAGTGGTATGGTTCACCAAGAAAAAAAGATTAATAGCTATGATCGAGCAAAATAAAGCATTGCACCAACTTATGCAACAATAATATTGACATCCCTGCCGACGTGTTTTTTGTTTAGTGTTATATATAATTTCCATATGCAATATAGATATCCTTGCTTAATCTCATGTGGTACTCAGGTCAATCAAGACGCCATTCATGCTGATATGATTACAACCCCACCCTCGAAGAAAGCAAAAAATTCGGAATCCGAGGAGCATGGAGTATCCAAAGTCAGCATGCCAAATATTGATGTACCATCAAATTTGATACGATCTATGTTTGGCCAGACCTACAAGTATCTCCCTCAAGGTACATTATTGTTTTCACATACTCCCTTCATTCCACAATGTACGGCAAAATTACTTTTTCAAGTTGTTTCATAATATAAGGCATATATGCATGCATGTCATTAACTAACACCTCTTCTCCACTAAAATATTATTATTTTAACTCTCCACTAAGACCTCTAATTTTATTGGGTGCATGCATAATTATCTCTTGGTCTTTGGTTTAAGAGTGGTTGTGCTTTATATATAAAACTTTGTGATATCAGAATTCATTTTTTTTTGTTTTACAGATTATGAATTAACAAATGAGGATGTAATGGCCATATTTTTAATTGAAGATTCGGCTGAAAATTGTACACTGGTGGACATGGGTCATTTTTATAACAAGAAACGTCACTTAACGTGCCTTCTCTCTGGAGATAAATTTTTGAACGATGATGTAAGTAAAACTGCCTATGATGAAGCAACGTTACAATTTAATTGCCAACATATTCTTTAGTAATTGCAGATTTTTAATTGAATCAACAGGTCATCAGTGCGTACATACACTGTTTGAGTGAGCAAGCAAATAACGATAAGAAAGTGAAATATGAAAACCCGTTTCTTTCTGACATGCTGAAAGCGGCTGGGGTCAATGGAGTAAATGAAGATGAAGATAACTTTATTACAAAGATAGTGAAGAATTACCTACACCATGAACTGGTATTGTTTGGCTCTCTATATTTGATAGTATTTAAGTTTATTATTTATTTATATATATAGATATAATATAATATAATATATGTCCTAACTCCATATGTCTTGTTTAGATTTTTATTCCAATAAATATGAAAGATAATCATTGGTATTTAGCGGTTGTCAACATAGAAAAAAAACAGATACAAGTACTTGATTCCATGTGTATGACATTCAATCGTGCTGACCTCGCAAATACGGTTAGTGTATATGACATGTGAACTCTCTTTTTTTTTTAAGATTGTAATTCATTTATGTATATTGCTGACTGTAAATATGATAATTGAGCAGCTACAAAGACTACAATATCATCTTAATATTATTGGACGGCAACAGGACTTGCCTAGCCACAAATGGGGTGACCTCAATGTTATCAAGTGGCCAATAATAGAACAACTAAAAGAAAGAATTCAGGAAGACAGGTATACTACAAATAAATTTTTCATGTAATATAATATTAATATAAGATGAATGATATATTTCAAATGGTGTACGGTTGTTTAGTTTTTAATAGTTGTACTTATACTTTAAAACAATGCAGTTCTTCATGTGGACTATTCATGCTCAAACTTATGGAGAATTGGACAGGAGAATCACTTTCTCGTTCTATTACACAGGTGTGTTTCTTAATAAAAAAATAGTTGATCAAATATCTTATCTATTTAAAATTAAATAAATTTACTTTTTAATGCGCAGGAGGATATTACACTTTTTAGGTCCAAACTAGCCAGTGTATTATTACGTTGGAAAACAAATAAGGCGGTCATGACGACCGGGGAACAAATCGAAGATACCAAAGATAGTGATGACGATGTTGTTATATTAGGTAGTCATCAACGGAAATTCGGCTCTACAAGGGACATCAATAAAACTAAAGAAGTAAACAAAAAATATAGTTCACTACTCTCTGTAGTATCTAAGATGAGTAAACAAGAGTTGATAAGCGGCCTTCTGCACTACATCCAACAGATTAATTGTGCTGAAGCCATGGAGTAAGCCACTGCAATGCATTGTATACACAATCGTAATTCATATATGCATTAACTTATTTTCTTTGATTGACAGGAAAATATGGGTACAAAGTTCAAGGCCGCACTATATTAGCTTGAGTCTCAAACAGCTTCAAACAATACTAAAGAAGGATGAGCCATTGGAAAGTGATTGCTTCAACATGGCTATTCGTAAGTTCATGTATGAAAAAATCGAGATGATTCATAAAACTAAACAAGCAATATCGAATCATTGCTTGGACTTGCAATTTTGGGTAAGTTTTTAAATTCTAATGCTCATGTCATTCTCTATTGCTCATGTTATTACCTATAATCGCAATATCGAATATATTGATTTATCTATTGCTTATGTAATTGAACCATTTTTTAAATCATGTAGAGTGCTACTGGCTTTGGTAAAGTCCCGGTCCACCATGACAACATAAATCTTGCAGAGACCGTCGGTAGTTGGTCGGAAATTCATTACAAACTTTCACAGTGCAAAGCGGTAAGATCGCTAAGATACCATCCTATATGGCCGTGTTTTATATATTATCTTGACGGATGATCTTTTGTAGATTCTTATACCAGTACGCCATGCTCGAAGTTTTATCGTGCTTGTAGTGGACCAAGAAAGTCAAACGCTCTATGTGTTAGACCCAAATCCACTTATGCCAGAATATAAAAATAACCCAAATATGAGATACACCAGAAAACTGATAACTATTTGTGATCACTTCAACAAAGCTATGAGAAAGGCATGCCCTGGCTCTAGGTGGAATGAAGACATCAACTTGTGGAGGCAAGTAATTGTCAATAATCCGGTTTACAGCAGGTAAGTTATCTTCTTAAAAACTCGTTCAAACCAACAAATTTAACTGTGTAGAGAAAGGGAAGCTAACTCTTCAATTTCCTTAGGAGTTTATCGGGTTTTCTTGTTCATCTCTTCATGTGTACATGGAATAATAAAGAACCACATTTGCCGGCAATTAATGTAAGTCTTGACAGGCATTAATTATTCATATATTACATTATTATATATTTACCAAAATTTAACTTATTAAATACATGTGCAGGATGGTGACGAGCTAAGGAAACTTTTTTTGCTAAATCTACTGATGTACCAACAAAATGAGTGTGAAAGCAACATCCCTAACGGCGTACAAGATTTTCTAAAGTGTATAAAGAATTCACAACACTAGGGTAGTTATTTAACTATATGGAACAACATTAGGGTTTAACTATAATATGGAGTGATTTAATTTGAGGTAATCATCCATTAGAAATGCCGTATCTACAAATGCTGGATGTTCTATATTTTTTGTTTGTGCTTTATTTGTATGATATCATCAAATTTTCAT

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CDS seq

ATGGATGCATCGCCGTCAAATCCGCCCTCGTCGACTCCGCCACATCCGCAGACTCCTCCGCCACTACTGTTGTTGACGACGCCGCCGCCGCCGCCAGTCCCGTCGTCGCCGGCTCCGCCGCCGTCGCCGCCGCTGCCGCCGTCGCCGCCGCCGCCATTGCCGTCGCCGGCTCCTCCTCCGCCGCCCTTGCCGTCATCTTCGGCGCCAAGCAATGTCAGCACAGATATTGATCCTGTCAATCAAGACGCCATTCATGCTGATATGATTACAACCCCACCCTCGAAGAAAGCAAAAAATTCGGAATCCGAGGAGCATGGAGTATCCAAAGTCAGCATGCCAAATATTGATGTACCATCAAATTTGATACGATCTATGTTTGGCCAGACCTACAAGTATCTCCCTCAAGATTATGAATTAACAAATGAGGATGTAATGGCCATATTTTTAATTGAAGATTCGGCTGAAAATTGTACACTGGTGGACATGGGTCATTTTTATAACAAGAAACGTCACTTAACGTGCCTTCTCTCTGGAGATAAATTTTTGAACGATGATGTCATCAGTGCGTACATACACTGTTTGAGTGAGCAAGCAAATAACGATAAGAAAGTGAAATATGAAAACCCGTTTCTTTCTGACATGCTGAAAGCGGCTGGGGTCAATGGAGTAAATGAAGATGAAGATAACTTTATTACAAAGATAGTGAAGAATTACCTACACCATGAACTGATTTTTATTCCAATAAATATGAAAGATAATCATTGGTATTTAGCGGTTGTCAACATAGAAAAAAAACAGATACAAGTACTTGATTCCATGTGTATGACATTCAATCGTGCTGACCTCGCAAATACGCTACAAAGACTACAATATCATCTTAATATTATTGGACGGCAACAGGACTTGCCTAGCCACAAATGGGGTGACCTCAATGTTATCAAGTGGCCAATAATAGAACAACTAAAAGAAAGAATTCAGGAAGACAGTTCTTCATGTGGACTATTCATGCTCAAACTTATGGAGAATTGGACAGGAGAATCACTTTCTCGTTCTATTACACAGGAGGATATTACACTTTTTAGGTCCAAACTAGCCAGTGTATTATTACGTTGGAAAACAAATAAGGCGGTCATGACGACCGGGGAACAAATCGAAGATACCAAAGATAGTGATGACGATGTTGTTATATTAGGTAGTCATCAACGGAAATTCGGCTCTACAAGGGACATCAATAAAACTAAAGAAGTAAACAAAAAATATAGTTCACTACTCTCTGTAGTATCTAAGATGAGTAAACAAGAGTTGATAAGCGGCCTTCTGCACTACATCCAACAGATTAATTGTGCTGAAGCCATGGAGAAAATATGGGTACAAAGTTCAAGGCCGCACTATATTAGCTTGAGTCTCAAACAGCTTCAAACAATACTAAAGAAGGATGAGCCATTGGAAAGTGATTGCTTCAACATGGCTATTCGTAAGTTCATGTATGAAAAAATCGAGATGATTCATAAAACTAAACAAGCAATATCGAATCATTGCTTGGACTTGCAATTTTGGAGTGCTACTGGCTTTGGTAAAGTCCCGGTCCACCATGACAACATAAATCTTGCAGAGACCGTCGGTAGTTGGTCGGAAATTCATTACAAACTTTCACAGTGCAAAGCGATTCTTATACCAGTACGCCATGCTCGAAGTTTTATCGTGCTTGTAGTGGACCAAGAAAGTCAAACGCTCTATGTGTTAGACCCAAATCCACTTATGCCAGAATATAAAAATAACCCAAATATGAGATACACCAGAAAACTGATAACTATTTGTGATCACTTCAACAAAGCTATGAGAAAGGCATGCCCTGGCTCTAGGTGGAATGAAGACATCAACTTGTGGAGGCAAGTAATTGTCAATAATCCGGTTTACAGCAGGAGTTTATCGGGTTTTCTTGTTCATCTCTTCATGTGTACATGGAATAATAAAGAACCACATTTGCCGGCAATTAATGATGGTGACGAGCTAAGGAAACTTTTTTTGCTAAATCTACTGATGTACCAACAAAATGAGTGTGAAAGCAACATCCCTAACGGCGTACAAGATTTTCTAAAGTGTATAAAGAATTCACAACACTAG

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Protein seq

MDASPSNPPSSTPPHPQTPPPLLLLTTPPPPPVPSSPAPPPSPPLPPSPPPPLPSPAPPPPPLPSSSAPSNVSTDIDPVNQDAIHADMITTPPSKKAKNSESEEHGVSKVSMPNIDVPSNLIRSMFGQTYKYLPQDYELTNEDVMAIFLIEDSAENCTLVDMGHFYNKKRHLTCLLSGDKFLNDDVISAYIHCLSEQANNDKKVKYENPFLSDMLKAAGVNGVNEDEDNFITKIVKNYLHHELIFIPINMKDNHWYLAVVNIEKKQIQVLDSMCMTFNRADLANTLQRLQYHLNIIGRQQDLPSHKWGDLNVIKWPIIEQLKERIQEDSSSCGLFMLKLMENWTGESLSRSITQEDITLFRSKLASVLLRWKTNKAVMTTGEQIEDTKDSDDDVVILGSHQRKFGSTRDINKTKEVNKKYSSLLSVVSKMSKQELISGLLHYIQQINCAEAMEKIWVQSSRPHYISLSLKQLQTILKKDEPLESDCFNMAIRKFMYEKIEMIHKTKQAISNHCLDLQFWSATGFGKVPVHHDNINLAETVGSWSEIHYKLSQCKAILIPVRHARSFIVLVVDQESQTLYVLDPNPLMPEYKNNPNMRYTRKLITICDHFNKAMRKACPGSRWNEDINLWRQVIVNNPVYSRSLSGFLVHLFMCTWNNKEPHLPAINDGDELRKLFLLNLLMYQQNECESNIPNGVQDFLKCIKNSQH

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_10g0388600 OsNip_10t0388600-00 Chr10 12849592 12854148 + RAP2018-11-26
CDS seq

ATGGATGCATCGCCGTCAAATCCGCCCTCGTCGACTCCGCCACATCCGCAGACTCCTCCGCCACTACTGTTGTTGACGACGCCGCCGCCGCCGCCAGTCCCGTCGTCGCCGGCTCCGCCGCCGTCGCCGCCGCTGCCGCCGTCGCCGCCGCCGCCATTGCCGTCGCCGGCTCCTCCTCCGCCGCCCTTGCCGTCATCTTCGGCGCCAAGCAATGTCAGCACAGATATTGATCCTGTCAATCAAGACGCCATTCATGCTGATATGATTACAACCCCACCCTCGAAGAAAGCAAAAAATTCGGAATCCGAGGAGCATGGAGTATCCAAAGTCAGCATGCCAAATATTGATGTACCATCAAATTTGATACGATCTATGTTTGGCCAGACCTACAAGTATCTCCCTCAAGATTATGAATTAACAAATGAGGATGTAATGGCCATATTTTTAATTGAAGATTCGGCTGAAAATTGTACACTGGTGGACATGGGTCATTTTTATAACAAGAAACGTCACTTAACGTGCCTTCTCTCTGGAGATAAATTTTTGAACGATGATGTCATCAGTGCGTACATACACTGTTTGAGTGAGCAAGCAAATAACGATAAGAAAGTGAAATATGAAAACCCGTTTCTTTCTGACATGCTGAAAGCGGCTGGGGTCAATGGAGTAAATGAAGATGAAGATAACTTTATTACAAAGATAGTGAAGAATTACCTACACCATGAACTGATTTTTATTCCAATAAATATGAAAGATAATCATTGGTATTTAGCGGTTGTCAACATAGAAAAAAAACAGATACAAGTACTTGATTCCATGTGTATGACATTCAATCGTGCTGACCTCGCAAATACGCTACAAAGACTACAATATCATCTTAATATTATTGGACGGCAACAGGACTTGCCTAGCCACAAATGGGGTGACCTCAATGTTATCAAGTGGCCAATAATAGAACAACTAAAAGAAAGAATTCAGGAAGACAGTTCTTCATGTGGACTATTCATGCTCAAACTTATGGAGAATTGGACAGGAGAATCACTTTCTCGTTCTATTACACAGGAGGATATTACACTTTTTAGGTCCAAACTAGCCAGTGTATTATTACGTTGGAAAACAAATAAGGCGGTCATGACGACCGGGGAACAAATCGAAGATACCAAAGATAGTGATGACGATGTTGTTATATTAGGTAGTCATCAACGGAAATTCGGCTCTACAAGGGACATCAATAAAACTAAAGAAGTAAACAAAAAATATAGTTCACTACTCTCTGTAGTATCTAAGATGAGTAAACAAGAGTTGATAAGCGGCCTTCTGCACTACATCCAACAGATTAATTGTGCTGAAGCCATGGAGAAAATATGGGTACAAAGTTCAAGGCCGCACTATATTAGCTTGAGTCTCAAACAGCTTCAAACAATACTAAAGAAGGATGAGCCATTGGAAAGTGATTGCTTCAACATGGCTATTCGTAAGTTCATGTATGAAAAAATCGAGATGATTCATAAAACTAAACAAGCAATATCGAATCATTGCTTGGACTTGCAATTTTGGAGTGCTACTGGCTTTGGTAAAGTCCCGGTCCACCATGACAACATAAATCTTGCAGAGACCGTCGGTAGTTGGTCGGAAATTCATTACAAACTTTCACAGTGCAAAGCGATTCTTATACCAGTACGCCATGCTCGAAGTTTTATCGTGCTTGTAGTGGACCAAGAAAGTCAAACGCTCTATGTGTTAGACCCAAATCCACTTATGCCAGAATATAAAAATAACCCAAATATGAGATACACCAGAAAACTGATAACTATTTGTGATCACTTCAACAAAGCTATGAGAAAGGCATGCCCTGGCTCTAGGTGGAATGAAGACATCAACTTGTGGAGGCAAGTAATTGTCAATAATCCGGTTTACAGCAGGAGTTTATCGGGTTTTCTTGTTCATCTCTTCATGTGTACATGGAATAATAAAGAACCACATTTGCCGGCAATTAATGATGGTGACGAGCTAAGGAAACTTTTTTTGCTAAATCTACTGATGTACCAACAAAATGAGTGTGAAAGCAACATCCCTAACGGCGTACAAGATTTTCTAAAGTGTATAAAGAATTCACAACACTAG

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Protein seq

MDASPSNPPSSTPPHPQTPPPLLLLTTPPPPPVPSSPAPPPSPPLPPSPPPPLPSPAPPPPPLPSSSAPSNVSTDIDPVNQDAIHADMITTPPSKKAKNSESEEHGVSKVSMPNIDVPSNLIRSMFGQTYKYLPQDYELTNEDVMAIFLIEDSAENCTLVDMGHFYNKKRHLTCLLSGDKFLNDDVISAYIHCLSEQANNDKKVKYENPFLSDMLKAAGVNGVNEDEDNFITKIVKNYLHHELIFIPINMKDNHWYLAVVNIEKKQIQVLDSMCMTFNRADLANTLQRLQYHLNIIGRQQDLPSHKWGDLNVIKWPIIEQLKERIQEDSSSCGLFMLKLMENWTGESLSRSITQEDITLFRSKLASVLLRWKTNKAVMTTGEQIEDTKDSDDDVVILGSHQRKFGSTRDINKTKEVNKKYSSLLSVVSKMSKQELISGLLHYIQQINCAEAMEKIWVQSSRPHYISLSLKQLQTILKKDEPLESDCFNMAIRKFMYEKIEMIHKTKQAISNHCLDLQFWSATGFGKVPVHHDNINLAETVGSWSEIHYKLSQCKAILIPVRHARSFIVLVVDQESQTLYVLDPNPLMPEYKNNPNMRYTRKLITICDHFNKAMRKACPGSRWNEDINLWRQVIVNNPVYSRSLSGFLVHLFMCTWNNKEPHLPAINDGDELRKLFLLNLLMYQQNECESNIPNGVQDFLKCIKNSQH

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g24954 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os10g0388600 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0014330 SBH 0.0 0.0 0.373481
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0009270 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0014020 SBH 0.0 0.495155 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_10g0016020 RBH 0.000000 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0015840 RBH 3.343555 0.000000 8.702914
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0247700 RBH 0 0.152876 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0014230 SBH 0.0 0.0 0.125249
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0230800 RBH 0.5017505 6.5562425 1.8041965
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_10g0013950 SBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0013830 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0014250 SBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0015590 RBH 0.162672 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_10g0014500 SBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G014190 SBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0014140 SBH 0.0 0.0 0.657688
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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