Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0035900 | OGI:03090280 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:34721807-34728934 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcttgttcacctttttcaatcatttcaacttgtgatagtgaaccataattctgatttttatgtggaatacattgaatacaaatctaccaagtttcttcaaagacatcactttgcttggctagcattatcagaagtttttttttatAaaaaaagtcaagagtatggaactaaatctgtgattccatgactggtgcaacagttgcttcaaatagtcaattaggaaacaaaaccctgcatatgtaagtgagtagtaattgagtatattgccatggctgtgttctttgatgaaggacatagaagcttttgagcattgaaatgttgtgtatccaactcaaacatacaaaaaccatacatatgtttgggttaacttatgttaatcgtcaatctcctcccagggaaaaattgaagatcttggtcgcatcgatttaggcacttatgctattgctgctgttgaagattgtaccaagcgcattggtgactatgttagtatagatgttctgaatgccgttcagaaaacagctccgaaaaatttggtgtataccgaaccttatgacaaggatgcatgcttacttgattttgatgtgcttgtggtggagccacgcaaactacggaaggacctgattgattctatcatggtgtggttcagggctttcagtctagccaatccaaggtcagtgactcacattctgtattgggcaacatccaccattgccagataaccatgcactcaaactcattcgaatagcgcactgtttgtctgtggactttccatttttcagggatcaaattaggttggcagtaacattggccttgtatgacaattatctgaagctcccttccaattggaagcgcgcagatgctaactcagacatactgaactacaacgggccaaagaatgtttgctctgaaggtggacgtcagcttcaagaagaaggcaatggcgatgagtggcaactgtaccttgatcagaaatcccttgccgtacttagttaactgaacaatggcatttcatccaacaacctgcacggttctctgttgcttggttgttgggagctgacgaccaccgtgagaaatacgcttcttgttaacctgtcacttgctcgtgaaaggaattgtgttttgatgttgtactcagtagactgatttgtttctgctaagcttaaagaatgttcgtttcagaggaatataaacttcagttcagccttgttttgctttctcctttctcttgcatttgacatatcctgtacaacactacaacttgactacacaagtccattcgagtatccagctgctgacattcttgatggcactcttttgacctgcgcacaaggctgactccgagacttagccgcgctcaattgttccactaacatagccaagctgctcaagctggcataatttagtttctacattattgccattacataatttacagctagattgctagtactatggtacatgctagtatatcacagcgtacatcacaggaaatcccagactggaatggtgtactggctttgatccgtggcttggtgacccagttgaggattgctgctaagaaactgcaatgactggatgtccggaggtggggcctacacgaaaacacggcatgcgacctactattaatttttgttaagcaattttatatgatcAaaaaacaaaggttaattccactacaagaaaagtatcaaatgagatcatgggacagagtgataacaaaaggttgatttaactataacacacctacatgaaaatcttcaagggaaatatgtgtatactcaacgaacacttgtagtcttagcctagtaattgctaatggaatctgtgaaagtgaaatcccttgggaagggaacatgggtgtaagttataacaatcacctgggggatttgtggaccgctatgaaagggtggttgctgtagatgaggttgctggagaggaacaggtgctggttcctgcaactgttttggagttcaaatttgcaagttataagaagaacaaaattgacacttctcttcagccattcatcaatgtagtcaatgctccaattacctgcccaaatggtgatatgccaggaaatccctgaagagagctaagtccgaattgctgtgcaatatacggtgcctgtatatgtgaagcaacaatattcagtacatgggtcatacagagtacaactacaaactacagttatcaacgtctgcactctgttcatcaaaactggggtttaggactggagaaagcagaaagcaaatataaatgttacctgcattatatggcttgttgcaagaaattgactggttggagttctcagatgatttggaatgtcatttgatattgtaggaggatcaaccctaagcggaacttcagcctcctcaggatccggtagacctacaacattttaataagatcaatccttgatctatataaaatctagttctgaagaagcttggatgaagaacaaaccttgtctaccctttttcttcttatttgattgaagaggactttgctgctgccgacgcgtatctacatttttaattttcttactacttactctgcgagtttcactgttgctggcttcatttggaaacaaatttggctgttgaactttcagtatagtgctcaatgaagatttatcatgtaactttgcttgcaatagaagttcaacttgctctataaactgatcacattggctctccatgtatgtataagcttcaatattttcggcagcttttgctgcaattttgtagaacgttcgatacaacatgctgtatcgtttagacaacaagaacctgggatcttcatctacagcttcaaaaccatagttctccctcggagattcactctgagcatcctttctccatcttttcaaaatgtagtgtggtggaagttctttaatatttcttacctcaagaactttcagtacatggcaacatggaatacctgtgaattcaaatttcttacagctacaaacaaccatacattctgatgagtcaaatctaacaaaatggtcacggggcctgtttttgacagttacctcatactcagatattggtccaatctcaccacagcaataagccatgcaagtcaaggtcagttcaaattccaacctgaacatctcaaaaagtgtaggagtatatgcattagcagcttgccaaagcatccgcagaggtgctactctctgtgccatttgaaccccaaggtagtcagcttgttgttcagctaggcgtttgttctccaaaagtttgtcataattgttaaagaaggatgggaaatccatttctttctttagaagatctgccagtatagcatcagtgttattatcacttcggagtgcggctgcaatatctgcacagaatgaatcacgtccataaggtaaagcccatctttctctatctgcatacaatttacctagccactcattgtcctttagattgtacttatctgagaggatttcccagcttgacaagaaatccccctcctcctcatagccatacaaccacctgctaaaatcgtctgcaaaagtttccgaggcttggaaggcatcccttaatatcttagtggcatttttatataaatgaatcagtgaaaagcgctgggtggtccttggccaaacagaagcaactgcttcactgattgctgtagattgatcgatcataactgtttttggttgcttgccactcattgcagatttgaaagtttcaaacaaccatttgaaggattcaactgattcatcataaaccaatgctgcaccaaatatgactggctgcttatgatggttaacaccaataaacaacaatagaggcctactatgatcacttgtgctatatcttgtgtcaacacacagtacatcaccaaagtagtggtaatccagaatcgacttaacatctgcccagaatacatttgtcaactggtcatcttcatccacttggatggcataaaagaaagaaggatgttcacctttcttcctctgcaaatattcataaattgcctgggtatcacctaattgcatatcttttgtgtgccttgtccttacataatttttataatcatttggtatcaaaacaactcttggtggatctggaggctgctgtaactttgctaataacttatgtgatctcagaacctggatgtccaccaaaggagtttcaagatcatgattatgatcagccacatactcagtcactacatatttgccactcacagtgattttaatagtcatgtgtgccagacaaccagttcttgtttctggccgtggcttcttgggatcagtactgacacttttagagcggaatccctctttagaacagaaatatgcccgagattttgtagtatttgttgctgttttttccaaccatccttttcggacgctgaaccccacagttccagcataggtgacatagcagtcataggccttgtcttcattcaggaaaaccattccaacttttggttctcctccaggtccagcaactacttccatttctggatctggttctccttcaattatttcatcttctttactctcaccctggaccaaagaaaacaactgtatgtgttaaagcaatgaggaatcgaatataaagaagtggttcatttggaatttttttggggttcattaggaattaataatgtaaagtttaaagtataagccattgttcccttttgtcacccaatcaaaaataagacggaggacacaaacaattagcttcaatgcagcattgcagagaaaaaacttttcaaataaacatacatcatttcacaagtgggtcttaccttatcttcttttttgagattttgcttttcaagacgtttagagcgcctttccgaaggttgctgcagtggttgccaattcatgaatataagaaaatacaacaagatggcataaatgaaatatctatgtggaaccaatatagaattaatgtatagtttgtgcagcagatgccaagaagtgtcacagaatacacagtttgttttgatattaaccccagagaagtgaacaattacattggtatgcaataaaagatttgtgtattgctaataattcctagttcagtaacaaacacaaattgtgcaaactacaaatgaagtgatagtgcattctttcAaaaaaaaaaaggaaatttatatgccagtttgcaagtgagtatatcaagtgcagtgagttgtaaactgagttgtgtgacctctagcttctgaggtactaactgctagataccagatgtgtactattttggctcttctcattggctaattaatcacgtactaaaatggAaaaaaatacaaacagagcatcagcaatatccattagtaacatggaagggaagttaccgtcagtccttcgcttgacagaaatctacctccatcaccacgttttcgtctttcagccaaagcttgacgtgaggcgatctgaaaacgacaagcatatacttaccaagtgaaactagttaaccgatgtgcatgtaccaactactgttggtatatatccagacaattcaacacttgtagcacatgcttatgtgttgacatttctagcacaaatgtatatatcctcacatgcttttgttgaaatttgaaaaactatctgaaatccttaaatatgatcaaccttgcatgcatcacgtatgaaaatgtgtgtgcatgacctagcgacataaatatcttatattgcctgggcacaatggtcagcttccaatcactacaagaaaaatgacagcatatatttctatccaaagctatatattgttcctgatttccagttgtgggctacagcgctttgtcgctttcctatttggatcactacccagttgagcgactgctaatcattttgagacaacattgagttcagaactcttgacatatatatatatgctcatttgcataaataaagcatagctacctgtgcagcttctattaagtgtgtgactagtacAaaaaaataacttccttccctttctatgttaaaagacatgacgaccagtaaaatgtcacgtatcaagcttcttactttccatcttatcagtgttcagtggtgcctacatacattcaaatctaccccctcagtaatttatattcatctttgtcacagctaataactaactccaaatattttaccttggcaggccttgccgaaacaggtctgctctgtcgctttgagaggtacttactaactatcttcttcctctcctcattagtgtactgtgatgccctcaaaccgagttccctcagcacacgtgcctgcagggcattgccctcggcatctgctttcctcggccttcccctccctctcttttcctgcacttccacttgtacctcctcttccatttcctcctccctttcccctttctgctcctcaacatcatcaccatcctgcgccaccacctcgtcctccttttcggcctccaattcgacaacaggcttctcatccttctctgtaacatcctttttagtcctacccctcttagaacccctcatcttgcgcgcctcttgcccgttatttgggactgctgtcccgacacccttctccgcagagctctccacttcgatcacctctgagttatttttcacagggttgggattcctcttattattggcgcccctcttcctcttgcctgcagcaccatcctgcacctcctcctctttcaactcatccaaaccatttgccttgttcctccgattggcgtaatttcctctggagcagaggaacctctgcatgatcatgacgccattaccaaccgatcggcgattggagcccgtgcgcgccttgaaccccaccctctcgccgtatccgtagtagaaccccttggcggcgtgcacggattcgaactccatccccatcaccggcaccgccgcggccacctccccctccccctccccgcacggcgccacctccacctcgtggttgtgctccaccaccagcttcgacaccctccacttccccccgaccgcgtccttcttcaccacctccatcatcgccctgcacctctcctccacccccacccccacccccacccccgccgccgacgaaggcgctgcctcctcctcctcctcctcctcatcagcatcagcagcgtccccgccctgacggagcgaggggtccgcgtccgcggcggcggaggcggcggcgtggtcagccat
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| CDS seq | atggctgaccacgccgccgcctccgccgccgcggacgcggacccctcgctccgtcagggcggggacgctgctgatgctgatgaggaggaggaggaggaggaggcagcgccttcgtcggcggcgggggtgggggtgggggtgggggtggaggagaggtgcagggcgatgatggaggtggtgaagaaggacgcggtcggggggaagtggagggtgtcgaagctggtggtggagcacaaccacgaggtggaggtggcgccgtgcggggagggggagggggaggtggccgcggcggtgccggtgatggggatggagttcgaatccgtgcacgccgccaaggggttctactacggatacggcgagagggtggggttcaaggcgcgcacgggctccaatcgccgatcggttggtaatggcgtcatgatcatgcagaggttcctctgctccagaggaaattacgccaatcggaggaacaaggcaaatggtttggatgagttgaaagaggaggaggtgcaggatggtgctgcaggcaagaggaagaggggcgccaataataagaggaatcccaaccctgtgaaaaataactcagaggtgatcgaagtggagagctctgcggagaagggtgtcgggacagcagtcccaaataacgggcaagaggcgcgcaagatgaggggttctaagaggggtaggactaaaaaggatgttacagagaaggatgagaagcctgttgtcgaattggaggccgaaaaggaggacgaggtggtggcgcaggatggtgatgatgttgaggagcagaaaggggaaagggaggaggaaatggaagaggaggtacaagtggaagtgcaggaaaagagagggaggggaaggccgaggaaagcagatgccgagggcaatgccctgcaggcacgtgtgctgagggaactcggtttgagggcatcacagtacactaatgaggagaggaagaagatagttagtaagtacctctcaaagcgacagagcagacctgtttcggcaaggcctgccaagatcgcctcacgtcaagctttggctgaaagacgaaaacgtggtgatggagttgttttctttggtccaggtactgatcccaagaagccacggccagaaacaagaactggttgtctggcacacatgactattaaaatcactgtgagtggcaaatatgtagtgactgagtatgtggctgatcataatcatgatcttgaaactcctttggtggacatccagaacaaacgcctagctgaacaacaagctgactaccttggggttcaaatggcacagagagtagcacctctgcggatgctttggcaagctgctaatgcatatactcctacactttttgagatgttcaggttggaatttgaactgaccttgacttgcatggcttattgctgtgcaaaagctgccgaaaatattgaagcttatacatacatggagagccaatgtgatcagtttatagagcaagttgaacttctattgcaagcaaagttacatgataaatcttcattgagcactatactgaaagttcaacagccaaatttgtttccaaatgaagccagcaacagtgaaactcgcagagtaagtagtaagaaaattaaaaatgtagatacgcgtcggcagcagcaaagtcctcttcaatcaaataagaagaaaaagggtagacaaggtctaccggatcctgaggaggctgaagttccgcttagggttgatcctcctacaatatcaaatgacattccaaatcatctgagaactccaaccagtcaatttcttgcaacaagccatataatgcaggcaccgtatattgcacagcaattcggacttagctctcttcagggatttcctggcatatcaccatttgggcaggaaccagcacctgttcctctccagcaacctcatctacagcaaccaccctttcatagcggtccacaaatcccccaggccccacctccggacatccagtcattgcagtttcttagcagcaatcctcaactgggtcaccaagccacggatcaaagccagtacaccattccagtctgggatttcctgtga
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| Protein seq | MADHAAASAAADADPSLRQGGDAADADEEEEEEEAAPSSAAGVGVGVGVEERCRAMMEVVKKDAVGGKWRVSKLVVEHNHEVEVAPCGEGEGEVAAAVPVMGMEFESVHAAKGFYYGYGERVGFKARTGSNRRSVGNGVMIMQRFLCSRGNYANRRNKANGLDELKEEEVQDGAAGKRKRGANNKRNPNPVKNNSEVIEVESSAEKGVGTAVPNNGQEARKMRGSKRGRTKKDVTEKDEKPVVELEAEKEDEVVAQDGDDVEEQKGEREEEMEEEVQVEVQEKRGRGRPRKADAEGNALQARVLRELGLRASQYTNEERKKIVSKYLSKRQSRPVSARPAKIASRQALAERRKRGDGVVFFGPGTDPKKPRPETRTGCLAHMTIKITVSGKYVVTEYVADHNHDLETPLVDIQNKRLAEQQADYLGVQMAQRVAPLRMLWQAANAYTPTLFEMFRLEFELTLTCMAYCCAKAAENIEAYTYMESQCDQFIEQVELLLQAKLHDKSSLSTILKVQQPNLFPNEASNSETRRVSSKKIKNVDTRRQQQSPLQSNKKKKGRQGLPDPEEAEVPLRVDPPTISNDIPNHLRTPTSQFLATSHIMQAPYIAQQFGLSSLQGFPGISPFGQEPAPVPLQQPHLQQPPFHSGPQIPQAPPPDIQSLQFLSSNPQLGHQATDQSQYTIPVWDFL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0035900 | OsNaBo_03g0035900.01 | Chr03 | 34721807 | 34728934 | - | NAM | ||
| CDS seq | atggctgaccacgccgccgcctccgccgccgcggacgcggacccctcgctccgtcagggcggggacgctgctgatgctgatgaggaggaggaggaggaggaggcagcgccttcgtcggcggcgggggtgggggtgggggtgggggtggaggagaggtgcagggcgatgatggaggtggtgaagaaggacgcggtcggggggaagtggagggtgtcgaagctggtggtggagcacaaccacgaggtggaggtggcgccgtgcggggagggggagggggaggtggccgcggcggtgccggtgatggggatggagttcgaatccgtgcacgccgccaaggggttctactacggatacggcgagagggtggggttcaaggcgcgcacgggctccaatcgccgatcggttggtaatggcgtcatgatcatgcagaggttcctctgctccagaggaaattacgccaatcggaggaacaaggcaaatggtttggatgagttgaaagaggaggaggtgcaggatggtgctgcaggcaagaggaagaggggcgccaataataagaggaatcccaaccctgtgaaaaataactcagaggtgatcgaagtggagagctctgcggagaagggtgtcgggacagcagtcccaaataacgggcaagaggcgcgcaagatgaggggttctaagaggggtaggactaaaaaggatgttacagagaaggatgagaagcctgttgtcgaattggaggccgaaaaggaggacgaggtggtggcgcaggatggtgatgatgttgaggagcagaaaggggaaagggaggaggaaatggaagaggaggtacaagtggaagtgcaggaaaagagagggaggggaaggccgaggaaagcagatgccgagggcaatgccctgcaggcacgtgtgctgagggaactcggtttgagggcatcacagtacactaatgaggagaggaagaagatagttagtaagtacctctcaaagcgacagagcagacctgtttcggcaaggcctgccaagatcgcctcacgtcaagctttggctgaaagacgaaaacgtggtgatggagttgttttctttggtccaggtactgatcccaagaagccacggccagaaacaagaactggttgtctggcacacatgactattaaaatcactgtgagtggcaaatatgtagtgactgagtatgtggctgatcataatcatgatcttgaaactcctttggtggacatccagaacaaacgcctagctgaacaacaagctgactaccttggggttcaaatggcacagagagtagcacctctgcggatgctttggcaagctgctaatgcatatactcctacactttttgagatgttcaggttggaatttgaactgaccttgacttgcatggcttattgctgtgcaaaagctgccgaaaatattgaagcttatacatacatggagagccaatgtgatcagtttatagagcaagttgaacttctattgcaagcaaagttacatgataaatcttcattgagcactatactgaaagttcaacagccaaatttgtttccaaatgaagccagcaacagtgaaactcgcagagtaagtagtaagaaaattaaaaatgtagatacgcgtcggcagcagcaaagtcctcttcaatcaaataagaagaaaaagggtagacaaggtctaccggatcctgaggaggctgaagttccgcttagggttgatcctcctacaatatcaaatgacattccaaatcatctgagaactccaaccagtcaatttcttgcaacaagccatataatgcaggcaccgtatattgcacagcaattcggacttagctctcttcagggatttcctggcatatcaccatttgggcaggaaccagcacctgttcctctccagcaacctcatctacagcaaccaccctttcatagcggtccacaaatcccccaggccccacctccggacatccagtcattgcagtttcttagcagcaatcctcaactgggtcaccaagccacggatcaaagccagtacaccattccagtctgggatttcctgtga
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| Protein seq | MADHAAASAAADADPSLRQGGDAADADEEEEEEEAAPSSAAGVGVGVGVEERCRAMMEVVKKDAVGGKWRVSKLVVEHNHEVEVAPCGEGEGEVAAAVPVMGMEFESVHAAKGFYYGYGERVGFKARTGSNRRSVGNGVMIMQRFLCSRGNYANRRNKANGLDELKEEEVQDGAAGKRKRGANNKRNPNPVKNNSEVIEVESSAEKGVGTAVPNNGQEARKMRGSKRGRTKKDVTEKDEKPVVELEAEKEDEVVAQDGDDVEEQKGEREEEMEEEVQVEVQEKRGRGRPRKADAEGNALQARVLRELGLRASQYTNEERKKIVSKYLSKRQSRPVSARPAKIASRQALAERRKRGDGVVFFGPGTDPKKPRPETRTGCLAHMTIKITVSGKYVVTEYVADHNHDLETPLVDIQNKRLAEQQADYLGVQMAQRVAPLRMLWQAANAYTPTLFEMFRLEFELTLTCMAYCCAKAAENIEAYTYMESQCDQFIEQVELLLQAKLHDKSSLSTILKVQQPNLFPNEASNSETRRVSSKKIKNVDTRRQQQSPLQSNKKKKGRQGLPDPEEAEVPLRVDPPTISNDIPNHLRTPTSQFLATSHIMQAPYIAQQFGLSSLQGFPGISPFGQEPAPVPLQQPHLQQPPFHSGPQIPQAPPPDIQSLQFLSSNPQLGHQATDQSQYTIPVWDFL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0035900 | OsNaBo_03g0035900.02 | Chr03 | 34726573 | 34727985 | - | IsoSeq | ||
| CDS seq | atggaggtagatttctgtcaagcgaag |
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| Protein seq | MEVDFCQAK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.797866 | 15.025755 | 12.944837 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0777700 | RBH | 4.172244 | 5.316103 | 11.902133 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g56630 | RBH | 1.777445 | 2.256394 | 1.910858 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0777700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036770 | RBH | 0.677223 | 12.346950 | 4.458741 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0036460 | RBH | 0.697987 | 4.249951 | 3.703143 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0036520 | RBH | 1.950323 | 6.121216 | 10.805071 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036810 | RBH | 0.305653 | 0.244676 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0036310 | RBH | 8.793895 | 24.294544 | 19.153130 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0444100 | SBH | 6.0248155 | 27.4659245 | 5.853337 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0036110 | RBH | 0.286296 | 0.554074 | 1.279265 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0498900 | SBH | 2.7972815 | 4.0200255 | 13.314579 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0036600 | RBH | 0.224355 | 0.256785 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0036610 | RBH | 0.678666 | 9.623447 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0036250 | RBH | 5.453501 | 30.037878 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0036340 | RBH | 0.958735 | 0.867510 | 1.151179 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0036300 | RBH | 0.196999 | 6.680421 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G036100 | RBH | 0.431430 | 1.132887 | 4.784954 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
