Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsGoSa_03g0036250 OGI:03090280 | 15/16 GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) Chr03:35404381-35411517
Gene Symbol -
DNA seq

gcttgttcacctttttcaatcatttcaacttgtgatagtgaaccataattctgatttttatgtggaatacattgaatacaaatctaccaagtttcttcaaagacatcactttgcttggctagcattatcagaagttttttttataaaaaaagtcaagagtatggaactaaatctgtgattccatgactggtgcaacagttgcttcaaatagtcaattaggaaacaaaaccctgcatacaaaaccctgcatatgtaagtgagtagtaattgagtatatttccatggctgtgttctttgatgaaggacatagaagcttttgagcattgaaatgttgtgtatccaactcaaacatacaaaaaccatacatatgtttgggttaacttatgttaatcgtcaatctcctcccagggaaaaattgaagatcttggtcgcatcgatttaggcacttatgctattgctgctgttgaagattgtaccaagcgcattggtgactatgttagtatagatgttctgaatgccgttcagaaaacagctccgaaaaatttggtgtataccgaaccttatgacaaggatgcatgcttacttgattttgatgtgcttgtggtggagccacgcaaactacggaaggacctgattgattctatcatggtgtggttcagggctttcagtctagccaatccaaggtcagtgactcacattatgtattgggcaacatccaccattgccagatcaccatgcactcaaactcattcgaatagcgcactgtttgtctgtggacttcccatttttcagggatcaaattaggttggcggtaacattggccttgtatgacaattatctgaagctcccttccaattggaagcgcgcagatgctaactcagacatactgaactacaacgggccaaagaatgtttgctctgaaggtggacgtcagcttcaagaagaaggcaatggcgatgagtggcaactgtaccttgatcagaaatcccttgccgtacttagttaactgaacaatggcatttcatccaacaacctgcacggttctctgttgcttggttgttgggagctgacgaccaccgtgagaaatacgcttcttgttaacctgtcacttgctcgtgaaaggattgtgttttgatgttgtactcagtagactgatttgtttctgctaagcttaaagaatgttcgtttcagaggaatatagacttcagttcagccttgttttgctttctcctttctcttgcatttgacatatcctgtacaacactacaacttgactacacaagtccattcgagtatccagctgctgacattcttgatggcactcttttgacctgcgcacaaggctgaatccgagacttagccgcgctcaattgttccactaacatagccaagctgctcaagctggcataatttagtttctacattattgccattacataatttacagctagattgctagtactatggtacatgctagtatatcacagcgtacatcacaggaaatcccagactggaatggtgtactggctttgatccgtggcttggtgacccagttgaggattgctgctaagaaactgcaatgactggatgtccggaggtggggcctacacgaaaacacggcatgcgacctactattaatttttgttaagcaattttatatgatcaaaaaacaaaggttaattccactacaagaaaagtatcaaatgagatcatgggacagagtgataacaaaaggttgatttaactataacacacctacatgaaaatcttcaagggaaatatgtgtatactcaacgaacacttgtagtcttagcctagtaattgctaatggaatctgtgaaagtgaaatcccttgggaagggaacatgggtgtaagttataacaatcacctgggggatttgtggaccgctatgaaagggtggttgctgtagatgagattgctggagaggagcaggtgctggttcctgcaactgttttggagttcaaatttgcaagttataagaagaacaaaattgacacttctcttcagccattcatcaatgtagtcaatgctccaattacctgcccaaatggtgatatgccaggaaatccctgaagagagctaagtccgaattgctgtgcaatatacggtgcctgtatatgtgaagcaacaatattcagtacatgggtcatacagagtacaactacaaactacagttatcaccgtctgcactctgttcatcaaaactggggtttaggactggagaaagcagaaagcaaatataaatgttacctgcattatatggcttgttgcaagaaattgactggttggagttctcagatgatttggaatgtcatttgatattgtaggaggatcaaccctaagcggaacttcagcctcctcaggatccggtagacctacaacattttaataagatcaatccttgatctatataaaatctagttctgaagaagcttggatgaagaacaaaccttgtctaccctttttcttcttatttgattgaagaggactttgctgctgccgacgcgtatctacatttttaattttcttactacttactctgcgagtttcactgttgctggcttcatttggaaacaaatttggctgttgaactttcagtatagtgctcaatgaagatttatcatgtaactttgcttgcaatagaagttcaacttgctctataaactgatcacattggctctccatgtatgtataagcttcaatattttcggcagcttttgctgcaattttgtagaacgttcgatacaacatgctgtatcgtttagacaacaagaacctgggatcttcatctacagcttcaaaaccatagttctccctcggagattcactctgagcatcctttctccatcttttcaaaatgtagtgtggtggaagttctttaatatttcttacctcaagaactttcagtacatggcaacatggaatacctgtgaattcaaatttcttacagctacaaacaaccatacattctgatgagtcaaatctaacaaaatggtcacggggcctgtttttgacagttacctcatactcagatattggtccaatctcaccacagcaataagccatgcaagtcaaggtcagttcaaattccaacctgaacatctcAaaaagtgtaggagtatatgcattagcagcttgccaaagcatccgcagaggtgctactctctgtgccatttgaaccccaaggtagtcagcttgttgttcagctaggcgtttgttctccaaaagtttgtcataattgttaaagaaggatgggaaatccatttctttctttagaagatctgccagtatagcatcagtgttattatcacttcggagtgcggctgcaatatctgcacagaatgaatcacgtccataaggtaaagcccatctttctctatctgcatacaatttacctagccactcattgtcctttagattgtacttatctgagaggatttcccagcttgacaagaaatccccctcctcctcatagccatacaaccacctgctaaaatcgtctgcaaaagtttccgaggcttggaaggcatcccttaatatcttagtggcatttttatataaatgaatcagtgaaaagcgctgggtggtccttggccaaacagaagcaactgcttcactgattgctgtagattgatcgatcataactgtttttggttgcttgccactcattgcagatttgaaagtttcaaacaaccatttgaaggattcaactgattcatcataaaccaatgctgcaccaaatatgactggctgcttatgatggttaacaccaataaacaacaatagaggcctactatgatcacttgtgctatatcttgtgtcaacacacagtacatcaccaaagtagtggtaatccagaatcgacttaacgtctgcccagaatacatttgtcaactggtcatcttcatccacttggatggcataaaagaaagaaggatgttcacctttcttcctctgcaaatattcataaattgcctgggtatcacctaattgcatatcttttgtgtgccttgtccttacataatttttataatcatttggtatcaaaacaactcttggtggatctggaggctgctgtaactttgctaataacttatgtgatctcagaacctggatgtccaccaaaggagtttcaagatcatgattatgatcagccacatactcagtcactacatatttgccactaacagtgattttaatagtcatgtgtgccagacaaccagttcttgtttctggccgtggcttcttgggatcagtactgacacttttagagcggaatccctctttagaacagaaatatgcccgagattttgtagtatttgttgctgttttttccaaccatccttttcggacgctgaaccccacagttccagcataggtgacatagcagtcataggccttgtcttcattcaggaaaaccattccaacttttggttctcctccaggtccagcaactacttccatttctggatctggttctccttcaattatttcatcttctttactctcaccctggaccaaagaaaacaactgtatgtgttaaagcaatgaggaatcgaatataaagaagtggttcatttggaatttttttggggttcattaggaattaataatgtaaagtttaaagtataagccattgttcccttttgtcacccaatcaaaaataagacggacacaaacaattagcttcaatgcagcattgcagagaaaaaacttttcaaataaacatacatcatttcacaagtgggtcttaccttatcttcttttttgagattttgcttttcaagacgtttagagcgcctttccaaaggttgctgcagtggttgccaattcatgaatataagaaaatacaacaagatggcataaatgaaatatctatgtggaaccaatatagaattaatgtatagtttgtgcagcagatgccaagaagtgtcacagaatacacagtttgttttgatattaaccccagagaagtgaacaattacattggtatgcaataaaagatttgtgtattgctaataattcctagttcagtaacaaacacaaactgtgcaaactacaaatgaagtgatagtgcattctttcAaaaaaaaaaaaggaaatttatatgccagtttgcaagtgagtatatcaagtgcagtgagttgtaaactgagttgtgtgacctctagcttctgaggtactaactgctagataccagatgtgtactattttggctcttctcattggctaattaatcacgtactaaaatggaaaaaaaatacaaacAGagcatcagcaatatccattagtaacatggaagggaagttaccgtcagtccttcgcttgacagaaatctacctccatcaccacgttttcgtctttcagccaaagcttgacgtgaggcgatctgaaaacgacaagcatatacttaccaagtgaaactagttaaccgatgtgcatgtaccaactactgttggtatatatccagacaattcaacacttgtagcacatgcttatgtgttgacatttctagcacaaatgtatatatcctcacatgcttttgttgaaatttgaaaaactatctgaaatccttaaatatgatcaaccttgcatgcatcacgtatgaaaatgtgtgtgcatgacctagcgacataaatatcttatatagcctGggcacaatggtcagcttccaatcactacaagaaaaatgacagcatatatttctatccaaagcTAtatattgttcctgatttccagttgtgggctacagcgctttgtcgctttcctatttggatcactacccagttgagcgactgctaatcattttgagacaacattgagttcagaactcttgaaatatatatatgctcatttgcataaataaagcatagctacctgtgcagcttctattaagtgtgtgactagtacAaaaaaataacttccttccctttctatgttaaaagacatgacgaccagtaaaatgtcacgtatcaagcttcttactttccatcttatcagtgttcagtggtgcctacatacattcaaatctaccccctcagtaatttatattcatctttgtcacagctaataactaactccaaatattttaccttggcaggccttgccgaaacaggtctgctctgtcgctttgagaggtacttactaactatcttcttcctctcctcattagtgtactgtgatgccctcaaaccgagttccctcagcacacgtgcctgcagggcattgccctcggcatctgctttcctcggccttcccctccctctcttttcctgcacttccacttgtacctcctcttccatttcctcctccctttcccctttctgctcctcaacatcatcaccatcttgcgccaccacctcgtcctccttttcggcctccaattcgacaacaggcttctcatccttctctgtaacatcctttttagtcctaCccctcttagaacccctcatcttgcgcgcctcttgcccgttatttgggactgctgtcccgacacccttctctgcagagctctccacttcgatcacctctgagttatttttcacagggttgggattcctcttattattggcgcccctcttcctcttgcctgcagcaccatcctgcacctcctcctctttcaactcatccaaaccatttgccttgttcctccgattggcgtaatttcctctggagcagaggaacctctgcatgatcatgacgccattaccaaccgatcggcgattggagcccgtgcgcgccttgaaccccaccctctcgccgtatccgtagtagaaccccttggcggcgtgcacggattcgaactccatccccatcaccggcaccgccgcggccacctccccctccccctccccgcacggcgccacctccacctcgtggttgtgctccaccaccagcttcgacaccctccacttccccccgaccgcgtccttcttcaccacctccatcatcgccctgcacctctcctccacccccacccccacccccacccccgccgccgacgaaggagctgcctcctcctcctcctcctcctcatcagcatcagcagcgtccccgccctgacggagcgaggggtccgcgtccgcggcggcggaggcggcggcgtggtcagccat

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CDS seq

atggctgaccacgccgccgcctccgccgccgcggacgcggacccctcgctccgtcagggcggggacgctgctgatgctgatgaggaggaggaggaggaggaggcagctccttcgtcggcggcgggggtgggggtgggggtgggggtggaggagaggtgcagggcgatgatggaggtggtgaagaaggacgcggtcggggggaagtggagggtgtcgaagctggtggtggagcacaaccacgaggtggaggtggcgccgtgcggggagggggagggggaggtggccgcggcggtgccggtgatggggatggagttcgaatccgtgcacgccgccaaggggttctactacggatacggcgagagggtggggttcaaggcgcgcacgggctccaatcgccgatcggttggtaatggcgtcatgatcatgcagaggttcctctgctccagaggaaattacgccaatcggaggaacaaggcaaatggtttggatgagttgaaagaggaggaggtgcaggatggtgctgcaggcaagaggaagaggggcgccaataataagaggaatcccaaccctgtgaaaaataactcagaggtgatcgaagtggagagctctgcagagaagggtgtcgggacagcagtcccaaataacgggcaagaggcgcgcaagatgaggggttctaagagggGtaggactaaaaaggatgttacagagaaggatgagaagcctgttgtcgaattggaggccgaaaaggaggacgaggtggtggcgcaagatggtgatgatgttgaggagcagaaaggggaaagggaggaggaaatggaagaggaggtacaagtggaagtgcaggaaaagagagggaggggaaggccgaggaaagcagatgccgagggcaatgccctgcaggcacgtgtgctgagggaactcggtttgagggcatcacagtacactaatgaggagaggaagaagatagttagtaagtacctctcaaagcgacagagcagacctgtttcggcaaggcctgccaagatcgcctcacgtcaagctttggctgaaagacgaaaacgtggtgatggaggtagatttctgtcaagcgaaggactgacgcaacctttggaaaggcgctctaaacgtcttgaaaagcaaaatctcaaaaaagaagataagaagccacggccagaaacaagaactggttgtctggcacacatgactattaaaatcactgttagtggcaaatatgtagtgactgagtatgtggctgatcataatcatgatcttgaaactcctttggtggacatccagaacaaacgcctagctgaacaacaagctgactaccttggggttcaaatggcacagagagtagcacctctgcggatgctttggcaagctgctaatgcatatactcctacacttttTgagatgttcaggttggaatttgaactgaccttgacttgcatggcttattgctgtgcaaaagctgccgaaaatattgaagcttatacatacatggagagccaatgtgatcagtttatagagcaagttgaacttctattgcaagcaaagttacatgataaatcttcattgagcactatactgaaagttcaacagccaaatttgtttccaaatgaagccagcaacagtgaaactcgcagagtaagtagtaagaaaattaaaaatgtagatacgcgtcggcagcagcaaagtcctcttcaatcaaataagaagaaaaagggtagacaaggtctaccggatcctgaggaggctgaagttccgcttagggttgatcctcctacaatatcaaatgacattccaaatcatctgagaactccaaccagtcaatttcttgcaacaagccatataatgcaggcaccgtatattgcacagcaattcggacttagctctcttcagggatttcctggcatatcaccatttgggcaggaaccagcacctgctcctctccagcaatctcatctacagcaaccaccctttcatagcggtccacaaatcccccaggccccacctccggacatccagtcattgcagtttcttagcagcaatcctcaactgggtcaccaagccacggatcaaagccagtacaccattccagtctgggatttcctgtga

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Protein seq

MADHAAASAAADADPSLRQGGDAADADEEEEEEEAAPSSAAGVGVGVGVEERCRAMMEVVKKDAVGGKWRVSKLVVEHNHEVEVAPCGEGEGEVAAAVPVMGMEFESVHAAKGFYYGYGERVGFKARTGSNRRSVGNGVMIMQRFLCSRGNYANRRNKANGLDELKEEEVQDGAAGKRKRGANNKRNPNPVKNNSEVIEVESSAEKGVGTAVPNNGQEARKMRGSKRGRTKKDVTEKDEKPVVELEAEKEDEVVAQDGDDVEEQKGEREEEMEEEVQVEVQEKRGRGRPRKADAEGNALQARVLRELGLRASQYTNEERKKIVSKYLSKRQSRPVSARPAKIASRQALAERRKRGDGGRFLSSEGLTQPLERRSKRLEKQNLKKEDKKPRPETRTGCLAHMTIKITVSGKYVVTEYVADHNHDLETPLVDIQNKRLAEQQADYLGVQMAQRVAPLRMLWQAANAYTPTLFEMFRLEFELTLTCMAYCCAKAAENIEAYTYMESQCDQFIEQVELLLQAKLHDKSSLSTILKVQQPNLFPNEASNSETRRVSSKKIKNVDTRRQQQSPLQSNKKKKGRQGLPDPEEAEVPLRVDPPTISNDIPNHLRTPTSQFLATSHIMQAPYIAQQFGLSSLQGFPGISPFGQEPAPAPLQQSHLQQPPFHSGPQIPQAPPPDIQSLQFLSSNPQLGHQATDQSQYTIPVWDFL

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsGoSa_03g0036250 OsGoSa_03g0036250.01 Chr03 35404381 35411517 - NAM
CDS seq

atggctgaccacgccgccgcctccgccgccgcggacgcggacccctcgctccgtcagggcggggacgctgctgatgctgatgaggaggaggaggaggaggaggcagctccttcgtcggcggcgggggtgggggtgggggtgggggtggaggagaggtgcagggcgatgatggaggtggtgaagaaggacgcggtcggggggaagtggagggtgtcgaagctggtggtggagcacaaccacgaggtggaggtggcgccgtgcggggagggggagggggaggtggccgcggcggtgccggtgatggggatggagttcgaatccgtgcacgccgccaaggggttctactacggatacggcgagagggtggggttcaaggcgcgcacgggctccaatcgccgatcggttggtaatggcgtcatgatcatgcagaggttcctctgctccagaggaaattacgccaatcggaggaacaaggcaaatggtttggatgagttgaaagaggaggaggtgcaggatggtgctgcaggcaagaggaagaggggcgccaataataagaggaatcccaaccctgtgaaaaataactcagaggtgatcgaagtggagagctctgcagagaagggtgtcgggacagcagtcccaaataacgggcaagaggcgcgcaagatgaggggttctaagagggGtaggactaaaaaggatgttacagagaaggatgagaagcctgttgtcgaattggaggccgaaaaggaggacgaggtggtggcgcaagatggtgatgatgttgaggagcagaaaggggaaagggaggaggaaatggaagaggaggtacaagtggaagtgcaggaaaagagagggaggggaaggccgaggaaagcagatgccgagggcaatgccctgcaggcacgtgtgctgagggaactcggtttgagggcatcacagtacactaatgaggagaggaagaagatagttagtaagtacctctcaaagcgacagagcagacctgtttcggcaaggcctgccaagatcgcctcacgtcaagctttggctgaaagacgaaaacgtggtgatggaggtagatttctgtcaagcgaaggactgacgcaacctttggaaaggcgctctaaacgtcttgaaaagcaaaatctcaaaaaagaagataagaagccacggccagaaacaagaactggttgtctggcacacatgactattaaaatcactgttagtggcaaatatgtagtgactgagtatgtggctgatcataatcatgatcttgaaactcctttggtggacatccagaacaaacgcctagctgaacaacaagctgactaccttggggttcaaatggcacagagagtagcacctctgcggatgctttggcaagctgctaatgcatatactcctacacttttTgagatgttcaggttggaatttgaactgaccttgacttgcatggcttattgctgtgcaaaagctgccgaaaatattgaagcttatacatacatggagagccaatgtgatcagtttatagagcaagttgaacttctattgcaagcaaagttacatgataaatcttcattgagcactatactgaaagttcaacagccaaatttgtttccaaatgaagccagcaacagtgaaactcgcagagtaagtagtaagaaaattaaaaatgtagatacgcgtcggcagcagcaaagtcctcttcaatcaaataagaagaaaaagggtagacaaggtctaccggatcctgaggaggctgaagttccgcttagggttgatcctcctacaatatcaaatgacattccaaatcatctgagaactccaaccagtcaatttcttgcaacaagccatataatgcaggcaccgtatattgcacagcaattcggacttagctctcttcagggatttcctggcatatcaccatttgggcaggaaccagcacctgctcctctccagcaatctcatctacagcaaccaccctttcatagcggtccacaaatcccccaggccccacctccggacatccagtcattgcagtttcttagcagcaatcctcaactgggtcaccaagccacggatcaaagccagtacaccattccagtctgggatttcctgtga

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Protein seq

MADHAAASAAADADPSLRQGGDAADADEEEEEEEAAPSSAAGVGVGVGVEERCRAMMEVVKKDAVGGKWRVSKLVVEHNHEVEVAPCGEGEGEVAAAVPVMGMEFESVHAAKGFYYGYGERVGFKARTGSNRRSVGNGVMIMQRFLCSRGNYANRRNKANGLDELKEEEVQDGAAGKRKRGANNKRNPNPVKNNSEVIEVESSAEKGVGTAVPNNGQEARKMRGSKRGRTKKDVTEKDEKPVVELEAEKEDEVVAQDGDDVEEQKGEREEEMEEEVQVEVQEKRGRGRPRKADAEGNALQARVLRELGLRASQYTNEERKKIVSKYLSKRQSRPVSARPAKIASRQALAERRKRGDGGRFLSSEGLTQPLERRSKRLEKQNLKKEDKKPRPETRTGCLAHMTIKITVSGKYVVTEYVADHNHDLETPLVDIQNKRLAEQQADYLGVQMAQRVAPLRMLWQAANAYTPTLFEMFRLEFELTLTCMAYCCAKAAENIEAYTYMESQCDQFIEQVELLLQAKLHDKSSLSTILKVQQPNLFPNEASNSETRRVSSKKIKNVDTRRQQQSPLQSNKKKKGRQGLPDPEEAEVPLRVDPPTISNDIPNHLRTPTSQFLATSHIMQAPYIAQQFGLSSLQGFPGISPFGQEPAPAPLQQSHLQQPPFHSGPQIPQAPPPDIQSLQFLSSNPQLGHQATDQSQYTIPVWDFL

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Gene Transcript Chromosome Start End Strand Source
OsGoSa_03g0036250 OsGoSa_03g0036250.02 Chr03 35405733 35406871 - IsoSeq
CDS seq

agaaaaagggtagacaaggtctaccggatcctgaggaggctgaagttccgcttagggttgatcctcctacaatatcaaatgacattccaaatc

Protein seq

RKRVDKVYRILRRLKFRLGLILLQYQMTFQI

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr03 35406344 35406442 - OsGoSa_03g0036250.02 OsGoSa_03g0036250.02,OsGoSa_03g0036250.01 All

Expression

Leaf Root Panicle
FPKM 5.453501 30.037878 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0777700 RBH 4.172244 5.316103 11.902133
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g56630 RBH 1.777445 2.256394 1.910858
Nipponbare | IRGSP 1.0 | RAP-db Os03g0777700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0036770 RBH 0.677223 12.346950 4.458741
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0036460 RBH 0.697987 4.249951 3.703143
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0036520 RBH 1.950323 6.121216 10.805071
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0036810 RBH 0.305653 0.244676 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0036310 RBH 8.793895 24.294544 19.153130
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0444100 SBH 6.0248155 27.4659245 5.853337
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0036110 RBH 0.286296 0.554074 1.279265
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0498900 SBH 2.7972815 4.0200255 13.314579
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0036600 RBH 0.224355 0.256785 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0036610 RBH 0.678666 9.623447 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0036340 RBH 0.958735 0.867510 1.151179
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0036300 RBH 0.196999 6.680421 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G036100 RBH 0.431430 1.132887 4.784954
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0035900 RBH 3.797866 15.025755 12.944837
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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