Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0008090 | OGI:03015860 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:5944481-5946303 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctgaccattgagaccattgagggcggagctagaacgaaatggggaggggtgccactgcttgctttactctgctttaggccgagtttagactgatatgagtaactgagtttggattgaagggggtgcatatatggtgaaaatatatgaactataactaaaaaaatttcttgaccaggttcctgggcaccccccctcttcaatgtagctcccctctcttcacccacaagtccagctagcctagcaaatttcacttttttcttctatcttgcatcatcacacgaagtgaactgcgtgatcgtcggagacatcgaatcaaaggtaaggttctgtgatgatcagcaccatgtaccaccacttttctttcttgtttttgcttggagttatctttctcatgatctgactcaaatgcactttgtgttcttgaatttctagctctcgcccattctgcttgctgccctgatctccttcaaattctagcccaaagaatggaggaccagatggccaaccttcgcttgactgacttcgagttcttcaggatcatcctgcccggatcctccaaaacgaaactggtaaaccaTtttttttgttgattcttgggtttctagcttcagcctagtgtgtgtttgatcgatccgtggtggtgcagaagctgccttacaagttcgcgagggagcttggggaccgagagctccgggaggcgaggctgcgggtcgccggcgaggggcggcgcccgtgggacgtgaaggtgttcgacgacgacgtcagcggcgacgtgtacctgggccgcggctggcaggagttcgcccgcgcccacgacctgcgtgacggccacttcctcgtcttccgctacgacggcgccgccgcgttcaccgtcaccgtcttcgacgagaccatgtgccgccgcgactaccgccgccaccacgacgccgccggcacgtaattgctcgccgccgcggccggccgccgccgccctcgctctggcatgactgatacctgtgtgttccgcctgcagagagcggaagcagcagcagcagcagcgacagcagtgatgcggcggcggcggcggcggcgacggcggcggcggagggggtcggcgacgtggcgctgtcgcagttcgccgtgacgctgcggcagtgcaacctcgaagacaagcaggcgcagtacttggtgagctcgtgcccacttcttttgctgccatttcttgttgccgattgccatgtgctagctaagtagctaaccaatccgaccaccggccgtcggcggcggcggcgcagaacgtgccgatggagttccaggaggcgcacgagtacgcgaggcgggagaaggtggtgctgcggatgcgcggggaggcatggacggtgaggctgaagcacagcaggcgggagcgcggccagcgcacggcgttccggtacgggtggcaccggttctgcgtcgacaacggcctcgccgtcggcgacacctgcttcttccgcgtcctccgcgagggcgacctccgccgcggcggcgccgccgacgaccacgtgctcaaggtcgccgtgcgcaaggccgacggcaccaccctcgagtgatcgatcttactaattaactactgagattaataatttaattagcgcgctctcgtagtctcgtctcgtcgtgtgtgtgtgtgtttaggtgttggttagtcgttctaaatggcccgtatttgtcttacgttaaatcgtctggtacttgatcggatggtgtttgtgggtgtggccactggcagatcgacaggtggccgagctgtgtaccgaactgctttattactctctttcacgaacaaggccctgtgtttcgcattc
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| CDS seq | atggaggaccagatggccaaccttcgcttgactgacttcgagttcttcaggatcatcctgcccggatcctccaaaacgaaactgagcggaagcagcagcagcagcagcgacagcagtgatgcggcggcggcggcggcggcgacggcggcggcggagggggtcggcgacgtggcgctgtcgcagttcgccgtgacgctgcggcagtgcaacctcgaagacaagcaggcgcagtacttgaacgtgccgatggagttccaggaggcgcacgagtacgcgaggcgggagaaggtggtgctgcggatgcgcggggaggcatggacggtgaggctgaagcacagcaggcgggagcgcggccagcgcacggcgttccggtacgggtggcaccggttctgcgtcgacaacggcctcgccgtcggcgacacctgcttcttccgcgtcctccgcgagggcgacctccgccgcggcggcgccgccgacgaccacgtgctcaaggtcgccgtgcgcaaggccgacggcaccaccctcgagtga
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| Protein seq | MEDQMANLRLTDFEFFRIILPGSSKTKLSGSSSSSSDSSDAAAAAAATAAAEGVGDVALSQFAVTLRQCNLEDKQAQYLNVPMEFQEAHEYARREKVVLRMRGEAWTVRLKHSRRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLREGDLRRGGAADDHVLKVAVRKADGTTLE |
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| Function | B3 domain-containing protein Os03g0212300 [UniProtKB/Swiss-Prot:Q10Q26] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0008090 | OsNaBo_03g0008090.01 | Chr03 | 5944966 | 5946098 | + | NAM | ||
| CDS seq | atggaggaccagatggccaaccttcgcttgactgacttcgagttcttcaggatcatcctgcccggatcctccaaaacgaaactgagcggaagcagcagcagcagcagcgacagcagtgatgcggcggcggcggcggcggcgacggcggcggcggagggggtcggcgacgtggcgctgtcgcagttcgccgtgacgctgcggcagtgcaacctcgaagacaagcaggcgcagtacttgaacgtgccgatggagttccaggaggcgcacgagtacgcgaggcgggagaaggtggtgctgcggatgcgcggggaggcatggacggtgaggctgaagcacagcaggcgggagcgcggccagcgcacggcgttccggtacgggtggcaccggttctgcgtcgacaacggcctcgccgtcggcgacacctgcttcttccgcgtcctccgcgagggcgacctccgccgcggcggcgccgccgacgaccacgtgctcaaggtcgccgtgcgcaaggccgacggcaccaccctcgagtga
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| Protein seq | MEDQMANLRLTDFEFFRIILPGSSKTKLSGSSSSSSDSSDAAAAAAATAAAEGVGDVALSQFAVTLRQCNLEDKQAQYLNVPMEFQEAHEYARREKVVLRMRGEAWTVRLKHSRRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLREGDLRRGGAADDHVLKVAVRKADGTTLE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0008090 | OsNaBo_03g0008090.02 | Chr03 | 5944481 | 5946303 | + | IsoSeq | ||
| CDS seq | atggacggtgaggctgaagcacagcaggcgggagcgcggccagcgcacggcgttccggtacgggtggcaccggttctgcgtcgacaacggcctcgccgtcggcgacacctgcttcttccgcgtcctccgcgagggcgacctccgccgcggcggcgccgccgacgaccacgtgctcaaggtcgccgtgcgcaaggccgacggcaccaccctcgagtgatcgatcttact
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| Protein seq | MDGEAEAQQAGARPAHGVPVRVAPVLRRQRPRRRRHLLLPRPPRGRPPPRRRRRRPRAQGRRAQGRRHHPRVIDLT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 7.554889 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0212300 | RBH | 0.0 | 0.0 | 6.521549 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g11370 | RBH | 0.0 | 0.0 | 1.679698 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0212300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0008280 | RBH | 0.0 | 0.0 | 5.713191 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0008250 | RBH | 0.0 | 0.0 | 3.511407 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0008330 | RBH | 0.0 | 0.0 | 8.049957 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0008320 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0008190 | RBH | 0.0 | 0.0 | 17.492455 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0099100 | SBH | 2.809285 | 4.1481495 | 3.222897 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0008130 | RBH | 0.0 | 0.0 | 0.880359 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0099800 | SBH | 2.6284375 | 2.998485 | 3.606788 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0008150 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0008220 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0008200 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0008210 | RBH | 0.0 | 0.0 | 1.844558 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0008180 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G008220 | RBH | 0.0 | 0.0 | 1.616298 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
