Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsCMeo_03g0008330 OGI:03015860 | 15/16 CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) Chr03:5915614-5917193
Gene Symbol -
DNA seq

AGCCTAGCAAAGTTCACATTTTTCTTCTATCTTGCATCATCACACGAAGTGAACTGCGTGATCGTCGGAGACATCGAATCAAAGGTAAGGTTCTGTGATGATCAGCACCATGTACCACCACTTTTCTTTTTTGTTTTTGCTTGGAGTTATCTTTCTCATGATCTGACTCAAATGCACTTTGTGTTCTTGAATTTCTAGCTCTCGCCCATTCTGCTTGCTGCCCTGATCTCCTTCAAATTCTAGCCCAAAGAATGGAGGACCAGATGGCTAACCTTCGCTTGACTGACTTCGAGTTCTTCAGGATCATCCTGCCCGGATCCTCCAAAACGAAACTGGTAAACCATTTTTTTTGTTGATTCTTGGGTTTCTAGCTTCAGCCTAGTGTGTGTTTGATCGATCCGTGGTGGTGCAGAAGCTGCCTTACAAGTTCGCGAGGGAGCTTGGGGACCGAGAGCTCCGGGAGGCGAGGCTGCGGGTCGCCGGCGAGGGGCGGCGCCCGTGGGACGTGAAGGTGTTCGACGACGACGTCAGCGGCGACGTGTACCTGGGCCGCGGCTGGCAGGAGTTCGCCCGCGCCCACGACCTGCGTGACGGCCACTTCCTCGTCTTCCGCTACGACGGCGCCGCCGCGTTCACCGTCACCGTCTTCGACGAGACCATGTGCCGCCGCGACTACCGCCGCCACCACGACGCCGCCGGCACGTAATTGCTCGCCGCCGCGGCCGGCCGCCGCCGCCCTCGCTCTGGCATGACTGATACCTGTGTGTTCCGCCTGCAGAGAGCGGAAGCAGCAGCAGCAGCGACAGCAGTGATGCGGCGGCGGCGGTGGCGACGGCGGCGGCGGAGGGGGTCGGCGACGTGGCGCTGTCGCAGTTCGCCGTGACGCTGCGGCAGTGCAACCTCGAAGACAAGCAGGCGCAGTACTTGGTGAGCTCGTGCCCACTTCTTTTGCTGCCATTTCTTGTTGCCGATTGCCATGTGCTAGCTAAGTAGCTAACCAATCCGACCACCGGCCGTCGGCGGCGGCGGCGCAGAACGTGCCGATGGAGTTCCAGGAGGCGCACGAGTACGCGAGGCGGGAGAAGGTGGTGCTGCGGATGCGCGGGGAGGCATGGACGGTGAGGCTGAAGCACAGCAGGCGGGAGCGCGGCCAGCGCACGGCGTTCCGGTACGGGTGGCACCGGTTCTGCGTCGACAACGGCCTCGCCGTCGGCGACACCTGCTTCTTCCGCGTCCTCCGCGAGGGCGACCTCCGCCGCGGCGGTGCCGCCGACGACCACGTGCTCAAGGTCGCCGTGCGCAAGGCCGACGGCACCACCCTCGAGTGATCGATCTTACTAATTAACTACTGAGATTAATAAATTAATTAGCGCGCTCTCGTAGTCTCGTCTCGTCGTGTGTGTGTGTGTTTAGGTGTTGGTTAGTCGTTCTAAATGGCCCGTATTTGTCTTACGTTAAATCGTCTGGTACTTGATCGGATGGTGTTTGTGGGTGTGCCACTGGCAGATCGACAGGTGGCCGAGCTGTGTACCGAACTGCTTTATTACTCTCTTTCACGAACAAGGCCCTGTGTTTCGCAT

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CDS seq

ATGGAGTTCCAGGAGGCGCACGAGTACGCGAGGCGGGAGAAGGTGGTGCTGCGGATGCGCGGGGAGGCATGGACGGTGAGGCTGAAGCACAGCAGGCGGGAGCGCGGCCAGCGCACGGCGTTCCGGTACGGGTGGCACCGGTTCTGCGTCGACAACGGCCTCGCCGTCGGCGACACCTGCTTCTTCCGCGTCCTCCGCGAGGGCGACCTCCGCCGCGGCGGTGCCGCCGACGACCACGTGCTCAAGGTCGCCGTGCGCAAGGCCGACGGCACCACCCTCGAGTGA

Protein seq

MEFQEAHEYARREKVVLRMRGEAWTVRLKHSRRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLREGDLRRGGAADDHVLKVAVRKADGTTLE

Function B3 domain-containing protein Os03g0212300 [UniProtKB/Swiss-Prot:Q10Q26]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsCMeo_03g0008330 OsCMeo_03g0008330.01 Chr03 5916657 5916941 + NAM
CDS seq

ATGGAGTTCCAGGAGGCGCACGAGTACGCGAGGCGGGAGAAGGTGGTGCTGCGGATGCGCGGGGAGGCATGGACGGTGAGGCTGAAGCACAGCAGGCGGGAGCGCGGCCAGCGCACGGCGTTCCGGTACGGGTGGCACCGGTTCTGCGTCGACAACGGCCTCGCCGTCGGCGACACCTGCTTCTTCCGCGTCCTCCGCGAGGGCGACCTCCGCCGCGGCGGTGCCGCCGACGACCACGTGCTCAAGGTCGCCGTGCGCAAGGCCGACGGCACCACCCTCGAGTGA

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Protein seq

MEFQEAHEYARREKVVLRMRGEAWTVRLKHSRRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLREGDLRRGGAADDHVLKVAVRKADGTTLE

Gene Transcript Chromosome Start End Strand Source
OsCMeo_03g0008330 OsCMeo_03g0008330.02 Chr03 5915614 5917193 + IsoSeq
CDS seq

ATGGACGGTGAGGCTGAAGCACAGCAGGCGGGAGCGCGGCCAGCGCACGGCGTTCCGGTACGGGTGGCACCGGTTCTGCGTCGACAACGGCCTCGCCGTCGGCGACACCTGCTTCTTCCGCGTCCTCCGCGAGGGCGACCTCCGCCGCGGCGGTGCCGCCGACGACCACGTGCTCAAGGTCGCCGTGCGCAAGGCCGACGGCACCACCCTCGAGTGATCGATCTTACT

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Protein seq

MDGEAEAQQAGARPAHGVPVRVAPVLRRQRPRRRRHLLLPRPPRGRPPPRRCRRRPRAQGRRAQGRRHHPRVIDLT

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 8.049957

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0212300 RBH 0.0 0.0 6.521549
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g11370 RBH 0.0 0.0 1.679698
Nipponbare | IRGSP 1.0 | RAP-db Os03g0212300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0008280 RBH 0.0 0.0 5.713191
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0008250 RBH 0.0 0.0 3.511407
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0008320 RBH 0.0 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0008190 RBH 0.0 0.0 17.492455
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0099100 RBH 2.809285 4.1481495 3.222897
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0008130 RBH 0.0 0.0 0.880359
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0099800 RBH 2.6284375 2.998485 3.606788
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0008150 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0008220 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0008200 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0008210 RBH 0.0 0.0 1.844558
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0008180 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G008220 RBH 0.0 0.0 1.616298
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0008090 RBH 0.0 0.0 7.554889
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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