Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsCMeo_03g0008330 | OGI:03015860 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:5915614-5917193 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | AGCCTAGCAAAGTTCACATTTTTCTTCTATCTTGCATCATCACACGAAGTGAACTGCGTGATCGTCGGAGACATCGAATCAAAGGTAAGGTTCTGTGATGATCAGCACCATGTACCACCACTTTTCTTTTTTGTTTTTGCTTGGAGTTATCTTTCTCATGATCTGACTCAAATGCACTTTGTGTTCTTGAATTTCTAGCTCTCGCCCATTCTGCTTGCTGCCCTGATCTCCTTCAAATTCTAGCCCAAAGAATGGAGGACCAGATGGCTAACCTTCGCTTGACTGACTTCGAGTTCTTCAGGATCATCCTGCCCGGATCCTCCAAAACGAAACTGGTAAACCATTTTTTTTGTTGATTCTTGGGTTTCTAGCTTCAGCCTAGTGTGTGTTTGATCGATCCGTGGTGGTGCAGAAGCTGCCTTACAAGTTCGCGAGGGAGCTTGGGGACCGAGAGCTCCGGGAGGCGAGGCTGCGGGTCGCCGGCGAGGGGCGGCGCCCGTGGGACGTGAAGGTGTTCGACGACGACGTCAGCGGCGACGTGTACCTGGGCCGCGGCTGGCAGGAGTTCGCCCGCGCCCACGACCTGCGTGACGGCCACTTCCTCGTCTTCCGCTACGACGGCGCCGCCGCGTTCACCGTCACCGTCTTCGACGAGACCATGTGCCGCCGCGACTACCGCCGCCACCACGACGCCGCCGGCACGTAATTGCTCGCCGCCGCGGCCGGCCGCCGCCGCCCTCGCTCTGGCATGACTGATACCTGTGTGTTCCGCCTGCAGAGAGCGGAAGCAGCAGCAGCAGCGACAGCAGTGATGCGGCGGCGGCGGTGGCGACGGCGGCGGCGGAGGGGGTCGGCGACGTGGCGCTGTCGCAGTTCGCCGTGACGCTGCGGCAGTGCAACCTCGAAGACAAGCAGGCGCAGTACTTGGTGAGCTCGTGCCCACTTCTTTTGCTGCCATTTCTTGTTGCCGATTGCCATGTGCTAGCTAAGTAGCTAACCAATCCGACCACCGGCCGTCGGCGGCGGCGGCGCAGAACGTGCCGATGGAGTTCCAGGAGGCGCACGAGTACGCGAGGCGGGAGAAGGTGGTGCTGCGGATGCGCGGGGAGGCATGGACGGTGAGGCTGAAGCACAGCAGGCGGGAGCGCGGCCAGCGCACGGCGTTCCGGTACGGGTGGCACCGGTTCTGCGTCGACAACGGCCTCGCCGTCGGCGACACCTGCTTCTTCCGCGTCCTCCGCGAGGGCGACCTCCGCCGCGGCGGTGCCGCCGACGACCACGTGCTCAAGGTCGCCGTGCGCAAGGCCGACGGCACCACCCTCGAGTGATCGATCTTACTAATTAACTACTGAGATTAATAAATTAATTAGCGCGCTCTCGTAGTCTCGTCTCGTCGTGTGTGTGTGTGTTTAGGTGTTGGTTAGTCGTTCTAAATGGCCCGTATTTGTCTTACGTTAAATCGTCTGGTACTTGATCGGATGGTGTTTGTGGGTGTGCCACTGGCAGATCGACAGGTGGCCGAGCTGTGTACCGAACTGCTTTATTACTCTCTTTCACGAACAAGGCCCTGTGTTTCGCAT
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CDS seq | ATGGAGTTCCAGGAGGCGCACGAGTACGCGAGGCGGGAGAAGGTGGTGCTGCGGATGCGCGGGGAGGCATGGACGGTGAGGCTGAAGCACAGCAGGCGGGAGCGCGGCCAGCGCACGGCGTTCCGGTACGGGTGGCACCGGTTCTGCGTCGACAACGGCCTCGCCGTCGGCGACACCTGCTTCTTCCGCGTCCTCCGCGAGGGCGACCTCCGCCGCGGCGGTGCCGCCGACGACCACGTGCTCAAGGTCGCCGTGCGCAAGGCCGACGGCACCACCCTCGAGTGA |
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Protein seq | MEFQEAHEYARREKVVLRMRGEAWTVRLKHSRRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLREGDLRRGGAADDHVLKVAVRKADGTTLE |
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Function | B3 domain-containing protein Os03g0212300 [UniProtKB/Swiss-Prot:Q10Q26] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsCMeo_03g0008330 | OsCMeo_03g0008330.01 | Chr03 | 5916657 | 5916941 | + | NAM | ||
CDS seq | ATGGAGTTCCAGGAGGCGCACGAGTACGCGAGGCGGGAGAAGGTGGTGCTGCGGATGCGCGGGGAGGCATGGACGGTGAGGCTGAAGCACAGCAGGCGGGAGCGCGGCCAGCGCACGGCGTTCCGGTACGGGTGGCACCGGTTCTGCGTCGACAACGGCCTCGCCGTCGGCGACACCTGCTTCTTCCGCGTCCTCCGCGAGGGCGACCTCCGCCGCGGCGGTGCCGCCGACGACCACGTGCTCAAGGTCGCCGTGCGCAAGGCCGACGGCACCACCCTCGAGTGA
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Protein seq | MEFQEAHEYARREKVVLRMRGEAWTVRLKHSRRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLREGDLRRGGAADDHVLKVAVRKADGTTLE |
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsCMeo_03g0008330 | OsCMeo_03g0008330.02 | Chr03 | 5915614 | 5917193 | + | IsoSeq | ||
CDS seq | ATGGACGGTGAGGCTGAAGCACAGCAGGCGGGAGCGCGGCCAGCGCACGGCGTTCCGGTACGGGTGGCACCGGTTCTGCGTCGACAACGGCCTCGCCGTCGGCGACACCTGCTTCTTCCGCGTCCTCCGCGAGGGCGACCTCCGCCGCGGCGGTGCCGCCGACGACCACGTGCTCAAGGTCGCCGTGCGCAAGGCCGACGGCACCACCCTCGAGTGATCGATCTTACT
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Protein seq | MDGEAEAQQAGARPAHGVPVRVAPVLRRQRPRRRRHLLLPRPPRGRPPPRRCRRRPRAQGRRAQGRRHHPRVIDLT |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 8.049957 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
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Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0212300 | RBH | 0.0 | 0.0 | 6.521549 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g11370 | RBH | 0.0 | 0.0 | 1.679698 |
Nipponbare | IRGSP 1.0 | RAP-db | Os03g0212300 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0008280 | RBH | 0.0 | 0.0 | 5.713191 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0008250 | RBH | 0.0 | 0.0 | 3.511407 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0008320 | RBH | 0.0 | 0.000000 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0008190 | RBH | 0.0 | 0.0 | 17.492455 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0099100 | RBH | 2.809285 | 4.1481495 | 3.222897 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0008130 | RBH | 0.0 | 0.0 | 0.880359 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0099800 | RBH | 2.6284375 | 2.998485 | 3.606788 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0008150 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0008220 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0008200 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0008210 | RBH | 0.0 | 0.0 | 1.844558 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0008180 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G008220 | RBH | 0.0 | 0.0 | 1.616298 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0008090 | RBH | 0.0 | 0.0 | 7.554889 |