Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0024200 | OGI:02067960 | 14/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:25377331-25382559 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggggaaatgcttgcgagcagcgttgaacgttcagaaaattaacacattattccagttaaaaatgatacaattcataagaaagtaaaagcgggctgattatagttacaaatattttttggaaatacaaaaacgtgaaaaatgaccactatctcctcgacaactcgatacaattttcaccgtgtttactcacatatgcaaaaagggcggaaatcttgacggcaaccaggctatctctctgaagcttgtttcctgtatcaggtgaaaacgtgagaaccaggcagattctgatggtagaacaatcaggggaaataaaaaaagttcaaaatagtttggagatgaactaaagtttgagagctcggagagctgtataccatggtaacttaaaagtgtctctccaccgagtctgcttagtaaaactcgtggatatcttgttcaggcgtacgattatctcttcgaacgtcggcctgaccgaaggtgttggatcccagcactcctgtataagcctgcatgcaacgaaccaccgtgagaggcaaatggcatgaagacaaaatgaaacataggcggttttgcattgaaaagaacaccgtgcttgatgatgttttaggtgctaaagtctaaacctccacagtacagccgagctgctaagAaaaaaaggtgaaggaagcagcttttgcaaagcgacatcgtttgccttttggcttatcgaacggaaccaaaattttgatttttataacctaattttaagttgattttaagatttttttatcatatttatattggcttttaaatcgctaagagaacatatataaaagctttacccataaattaatttttggattgataataagccgtaaaacgacttatcagcggagtataagccaaacgattaaactcggttgcgaaTtttgattgagcagaaacaaagctcattgcgagaccaccaaggtaataatacagtgcatagaaattacttctagttactagtggaaaagcttatagtaaagattcactcactctctcaaatcatcaggatagtatttgggtttgttcttgaacggtggtctcataccctccaaacaaatcattttcgccgcctcctccggtggttttgggtggaaagcatgagttccttcaatcatctgaatcataaaagtccatgcagaaaatgccattttaaaaagatgccagttcaagtAaatatcggagtcaaatcaaaccaccactgtggattttttttttcttctctttcaatacattcaactgtgacaactctttagcatataggagtacaaattgattctgttgcgtgtaagatgaatgcttttacatacctcataaagaatgagaccaaatgcaaatacatctacacttctgtcaaacgttccatttctgtacatctcaggagcggtgtatacacctaggcaaaatacggtatgaagattgttgagtacaagatagaacaccaagtgttcaagtgactcttttgcacataatagaagataaaatacaaaacatgcacacagcccatagtaaaccgattctattacaggccatggaaagttagttaaaatgatacaaaacaatacagggagaaaaacattcataagtcttaacttcacgtaaagaacagatgcagctgcaacggggccaataaaattgactaaaggaatgtagctctctggagcaaaggccgggatgttactcattccattatctAaaaaaaaagaatatgttccgtctaaaggattaacatcataaataacttataaccatttaaccaggttttaaagtacatttaatcggttataagcttcatgcacgtataaagtgcccccttttttttttccaaaatgcataaattcatatatccatttcaacgatattccctaataagccgtttggcttattagtgaatatgggcaactgatgaggctctagaaaccacatgttattttaaagaagtatagaccaataagtaacacgattagtcactccccaatcaaatgtgcacttttgtacatcgcctaggaattttaagtagtacaatatattgccaatttgccatagtttctgacactagaatatgcccaatatgtatgaactgaagtcgatataaactgccaatgagcaatttcagggtgtagcatcaaaacaagagttcaacatactgttaaattttgatgtcgtctgatccatttgtggattatcttctgagactttaatcagactacgtgagccaaagcctgccactttaagtttcccttcatcatcccgcacaatgcttctgcaaccttaccAaaatatcataacatacagtgcacaagttgaaagacagtatggttcaaaacattgaaccaacccaatgataaaattaatttaattcagcttactttgttgacagattgccatggatgattggctctggcttgcactcgtggagataatttaatcccctaaatgagaaaaaacgaatgctctctcaatttgtagaaaaacataaaatcaggtttccaaagctagcagacatgagcttcattttactctattgaatatgtcttctgacatacctcgcaatgtcaagggaaaatctgatagctttgtaaggctgcaagcgaccttttgtttcaagataactggctaaatcaccctaatccgaaaaaaaaaacagatttagtcattgatgacaaaagaggcatactgttcaggtaagttcatagtactcttatcaagattatgtgaaaattgtccatagactgccaaccattgcaccaaggaaattatcaatttgaaggaatatgattaggaaataattatgtgtaaaaagacaatcgttgcctcctccagttgaatcaatcataacagcttaccttttgatgatactctgaaacaatcatcattggtacattttgtgtaacagctcccacaaattggaccaaatttggatggcgggccttctccagtaaagtaagctcgtgtttaaattcatttctgagttgatatagcaatgaaacttagagttagaagcacagcatgaaaaataaaaaaagaaaagcaaaaaacaccaagtagacagatctggaaaatagggaacctctatttatcatttaaaactattttagtttaggttacacactgaccatatgaaaataacatccattatgatatcaacaacaagcatcacttcaataacaataatataatttactcttagttttgtctgtgaaaacaaagattgttggtcaagtttagtgaacaaaaatagcatgacgtcactgagtaattggaattccacactgatatatccaacaaactgaaacaacaaatcactgcacttgtatggttataatagtctaaaaatgcttttatgtatatgcatcagtaataaaatccatgtgtaaaaatgtagtatgcatgaacggtatttttaatcacatgaagagaagatgtagatcatggactcatggtagtgaatagttgactgcatgaggcataaataaggtacaatagtaaggagaattacggaggcagctaatacatgctattggcgtctgagaagctgtctttgtcaagtatcttaacaaacactttggatccataccacctggcaacatagtgaccctgtaaaaagttttatggcaagtaggatttgtcaagattctgtgaaagtcataagagaaaaaaagggcatgtgcatttgcatgaatgtgaagaagaaaagacatggaccataatttagaagatagaactcacaaaacaatcaactgatgaaaatactaagaaccatcactagattgagtttccatggggagtggagcacaatttattaatcattgtaagtccagatataaatcaggtgtcatacacaaacacatgccttttaagtatcataagccttagcacttaagtggaagttgataaataccaaacatatgaataaacaaattactggaaaaaaaacaggggaagttgagcgtgcctttgtaacttcctctcctcttctgaactcgagttcaagtgggttcagctcatactccggaacttctttgggatttgaaactgtcatcggggtcttcttttgtttctaagaagcaaaaaaagaaaaaaaaacatgacactatatatgttctgtatatatgtatcaaagcaagtaagcaacaatcaattgcttcaggagtttaagtaggtgattatagtaccggagtttttgctcctcttgctctcagaaggttgtaaacttcaaagtgcccgtaatgcttcgcgtctgccgctggctgaacataagaacattgcacgcatcatttatgttcgatcagtcaatcgacttattcatggatagtgcgtacgtgccttacacttcgctagttgcagtcttgcagaaacaaaatgaatactcgattactagtaatgtttgatactttgatcacacagaacgaacactagaaaatgttcagtagtacatgaacagtcttcatccagattccagaacttagaacagagcaccatggatagcaatgcgaggagaggagagaagagaaaaggatggcgcagtaccgtgctgccccagcggtcgcgggcgttcatgttggccttccagctgagcagcaggcgcaccacctccccctgcccctcgcaggcggcgatgtgcatcgccgtgcgcccgtcgaggtcaatgctgtcgacgtccaccccgtccctgagcagctcctccaccccggccacgtccccctggcacgccgcgaacagcagccgcatcgtcgcgtccaggttctccggcacggccagcatcgccgccgcccccgacccatcctccgccgccccgcccccctcccgcggcgtcgggtcgagcgacgactgcctcgcgagcccgaacctcgtcggcctcgcccctccccctccccctccccctccccctccccctccccctcctccacctcctccaccaccaccgcccaccgcccccgcccgccgcggcgtgtacaccggctccagcgacagctgccgccacaccctcgccgcccccgacgacagctgccgcgatatgctcctcttcagcttcgccgccgcctccataccccgatggcgatcaccactcctccgaagaatcccgcggccgcggttgggatctcgcgccgtggggtggatgcttttggggattggagagtggggttccacgaaccgagcgtactactgctactactaccggaggacgattagtatacgcggaattcc
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| CDS seq | atggaggcggcggcgaagctgaagaggagcatatcgcggcagctgtcgtcgggggcggcgagggtgtggcggcagctgtcgctggagccggtgtacacgccgcggcgggcgggggcggtgggcggtggtggtggaggaggtggaggagggggagggggagggggagggggagggggagggggaggggcgaggccgacgaggttcgggctcgcgaggcagtcgtcgctcgacccgacgccgcgggaggggggcggggcggcggaggatgggtcgggggcggcggcgatgctggccgtgccggagaacctggacgcgacgatgcggctgctgttcgcggcgtgccagggggacgtggccggggtggaggagctgctcagggacggggtggacgtcgacagcattgacctcgacgggcgcacggcgatgcacatcgccgcctgcgaggggcagggggaggtggtgcgcctgctgctcagctggaaggccaacatgaacgcccgcgaccgctggggcagcacgccagcggcagacgcgaagcattacgggcactttgaagtttacaaccttctgagagcaagaggagcaaaaactccgaaacaaaagaagaccccgatgacagtttcaaatcccaaagaagttccggagtatgagctgaacccacttgaactcgagttcagaagaggagaggaagttacaaagggtcactatgttgccaggtggtatggatccaaagtgtttgttaagatacttgacaaagacagcttctcagacgccaatagcataaatgaatttaaacacgagcttactttactggagaaggcccgccatccaaatttggtccaatttgtgggagctgttacacaaaatgtaccaatgatgattgtttcagagtatcatcaaaagggtgatttagccagttatcttgaaacaaaaggtcgcttgcagccttacaaagctatcagattttcccttgacattgcgaggggattaaattatctccacgagtgcaagccagagccaatcatccatggcaatctgtcaacaaaaagcattgtgcgggatgatgaagggaaacttaaagtggcaggctttggctcacgtagtctgattaaagtctcagaagataatccacaaatggatcagacgacatcaaaatttaacagtgtatacaccgctcctgagatgtacagaaatggaacgtttgacagaagtgtagatgtatttgcatttggtctcattctttatgagatgattgaaggaactcatgctttccacccaaaaccaccggaggaggcggcgaaaatgatttgtttggagggtatgagaccaccgttcaagaacaaacccaaatactatcctgatgatttgagagagcttatacaggagtgctgggatccaacaccttcggtcaggccgacgttcgaagagataatcgtacgcctgaacaagatatccacgagaaacaagcttcagagagatagcctggttgccgtcaagatttccgccctttttgcatatgtgagtaaacacggtgaaaattgtatcgagttgtcgaggagatag
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| Protein seq | MEAAAKLKRSISRQLSSGAARVWRQLSLEPVYTPRRAGAVGGGGGGGGGGGGGGGGGGGGGGARPTRFGLARQSSLDPTPREGGGAAEDGSGAAAMLAVPENLDATMRLLFAACQGDVAGVEELLRDGVDVDSIDLDGRTAMHIAACEGQGEVVRLLLSWKANMNARDRWGSTPAADAKHYGHFEVYNLLRARGAKTPKQKKTPMTVSNPKEVPEYELNPLELEFRRGEEVTKGHYVARWYGSKVFVKILDKDSFSDANSINEFKHELTLLEKARHPNLVQFVGAVTQNVPMMIVSEYHQKGDLASYLETKGRLQPYKAIRFSLDIARGLNYLHECKPEPIIHGNLSTKSIVRDDEGKLKVAGFGSRSLIKVSEDNPQMDQTTSKFNSVYTAPEMYRNGTFDRSVDVFAFGLILYEMIEGTHAFHPKPPEEAAKMICLEGMRPPFKNKPKYYPDDLRELIQECWDPTPSVRPTFEEIIVRLNKISTRNKLQRDSLVAVKISALFAYVSKHGENCIELSRR |
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| Function | Integrin-linked protein kinase 1 [UniProtKB/Swiss-Prot:F4IS56] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0024200 | OsNaBo_02g0024200.01 | Chr02 | 25377331 | 25382559 | - | NAM | ||
| CDS seq | atggaggcggcggcgaagctgaagaggagcatatcgcggcagctgtcgtcgggggcggcgagggtgtggcggcagctgtcgctggagccggtgtacacgccgcggcgggcgggggcggtgggcggtggtggtggaggaggtggaggagggggagggggagggggagggggagggggagggggaggggcgaggccgacgaggttcgggctcgcgaggcagtcgtcgctcgacccgacgccgcgggaggggggcggggcggcggaggatgggtcgggggcggcggcgatgctggccgtgccggagaacctggacgcgacgatgcggctgctgttcgcggcgtgccagggggacgtggccggggtggaggagctgctcagggacggggtggacgtcgacagcattgacctcgacgggcgcacggcgatgcacatcgccgcctgcgaggggcagggggaggtggtgcgcctgctgctcagctggaaggccaacatgaacgcccgcgaccgctggggcagcacgccagcggcagacgcgaagcattacgggcactttgaagtttacaaccttctgagagcaagaggagcaaaaactccgaaacaaaagaagaccccgatgacagtttcaaatcccaaagaagttccggagtatgagctgaacccacttgaactcgagttcagaagaggagaggaagttacaaagggtcactatgttgccaggtggtatggatccaaagtgtttgttaagatacttgacaaagacagcttctcagacgccaatagcataaatgaatttaaacacgagcttactttactggagaaggcccgccatccaaatttggtccaatttgtgggagctgttacacaaaatgtaccaatgatgattgtttcagagtatcatcaaaagggtgatttagccagttatcttgaaacaaaaggtcgcttgcagccttacaaagctatcagattttcccttgacattgcgaggggattaaattatctccacgagtgcaagccagagccaatcatccatggcaatctgtcaacaaaaagcattgtgcgggatgatgaagggaaacttaaagtggcaggctttggctcacgtagtctgattaaagtctcagaagataatccacaaatggatcagacgacatcaaaatttaacagtgtatacaccgctcctgagatgtacagaaatggaacgtttgacagaagtgtagatgtatttgcatttggtctcattctttatgagatgattgaaggaactcatgctttccacccaaaaccaccggaggaggcggcgaaaatgatttgtttggagggtatgagaccaccgttcaagaacaaacccaaatactatcctgatgatttgagagagcttatacaggagtgctgggatccaacaccttcggtcaggccgacgttcgaagagataatcgtacgcctgaacaagatatccacgagaaacaagcttcagagagatagcctggttgccgtcaagatttccgccctttttgcatatgtgagtaaacacggtgaaaattgtatcgagttgtcgaggagatag
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| Protein seq | MEAAAKLKRSISRQLSSGAARVWRQLSLEPVYTPRRAGAVGGGGGGGGGGGGGGGGGGGGGGARPTRFGLARQSSLDPTPREGGGAAEDGSGAAAMLAVPENLDATMRLLFAACQGDVAGVEELLRDGVDVDSIDLDGRTAMHIAACEGQGEVVRLLLSWKANMNARDRWGSTPAADAKHYGHFEVYNLLRARGAKTPKQKKTPMTVSNPKEVPEYELNPLELEFRRGEEVTKGHYVARWYGSKVFVKILDKDSFSDANSINEFKHELTLLEKARHPNLVQFVGAVTQNVPMMIVSEYHQKGDLASYLETKGRLQPYKAIRFSLDIARGLNYLHECKPEPIIHGNLSTKSIVRDDEGKLKVAGFGSRSLIKVSEDNPQMDQTTSKFNSVYTAPEMYRNGTFDRSVDVFAFGLILYEMIEGTHAFHPKPPEEAAKMICLEGMRPPFKNKPKYYPDDLRELIQECWDPTPSVRPTFEEIIVRLNKISTRNKLQRDSLVAVKISALFAYVSKHGENCIELSRR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0024200 | OsNaBo_02g0024200.02 | Chr02 | 25377331 | 25377833 | - | IsoSeq | ||
| CDS seq | gcttatacaggagtgctgggatccaacaccttcggtcaggccgacgttcgaagagataatcgtacgcctgaacaagatatccacgagttt |
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| Protein seq | AYTGVLGSNTFGQADVRRDNRTPEQDIHEF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr02 | 25377579 | 25377748 | - | OsNaBo_02g0024200.02 | OsNaBo_02g0024200.01,OsNaBo_02g0024200.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.950667 | 87.339294 | 5.403503 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0608500 | RBH | 2.393231 | 1.376641 | 1.935682 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g39560 | RBH | 1.468277 | 0.836449 | 0.392801 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0608500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024400 | RBH | 0.900608 | 14.923710 | 3.794898 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0024540 | RBH | 0.500817 | 3.800311 | 1.986471 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0024540 | RBH | 3.476565 | 36.225979 | 9.007833 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024180 | RBH | 0.603893 | 0.588162 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024080 | RBH | 10.170533 | 29.175985 | 16.731836 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0376900 | SBH | 8.2848755 | 20.7112605 | 27.204055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0023940 | RBH | 0.693683 | 3.012796 | 0.933274 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0404700 | SBH | 10.2610025 | 20.291044 | 26.3853885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0024200 | RBH | 0.204434 | 0.224353 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024160 | RBH | 1.119814 | 16.238319 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0024470 | RBH | 4.671851 | 52.591030 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024220 | RBH | 1.061296 | 2.202572 | 0.782897 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0023920 | RBH | 1.414671 | 32.740639 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024350 | RBH | 1.041826 | 6.215465 | 2.225638 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017510 | SBH | 2.650104 | 0.000000 | 5.994921 |
