Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsNaBo_02g0022440		OGI:02063720 \| 15/16			NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)			Chr02:24022110-24027466		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		NRT1.5B, OsNRT1.5B
DNA seq		agtgaaaaccgatcagttttattaacattgacaatgtgttttcatagaagtagttctgaaagcaaaattgaaagctctgggaaatttacaacacttctttttttcaaaatatcttcacttggcaaacattacctcagctcatctatctccattaacatttttcaggagattgaagctagcatcatatcatatcatacactgcactctgcacgaaaactgctacgcacactacctcaaaaacccaaacctctatactacgattgcacactaacattcgtacacactacacgtctacacatccatcccttctacggcctccttgaccacgacgaagtcgtccatctccttctcctcgccggcgccgccgtccttggcagcggcgggcgccaccaccacggcggccgtgccggcgggctgcttgtactcgtggcgcctcgcgaacacgaggaacacggcgaagttggccaccccgagcacggccagcatccagtagaagaggtccagcctgccggcgtcgaggtcgttccgtatccacgCcccccgcgtggcggcgtcgacggcgaagacgaggaagctgctgaggaagaaccccatggacagcgtcaccaggaagagccccgtgctcatcgacttcatccgctccggcgcctcgcggatgaagaactccagctgcccgacgtacgcgaacgcctcgccggcgcccaccaggaagaactgcggcaccagccagaacgcgctgatcatgccgccgccgccgccgtcgttggcggcgtcgcgccgcttcttctcgacgagcgcggaggtggccatggcgacggtggcgaggacgaggcccgcgccgacgcgctggagcgaggtgaggccctgggggcggcgggtgaggcggcgggccgccggcacgaggacgcgctcgttgagggaggtgaagaggaggatggagaggaagaggaagacggagagggagcccgccgggatggcgaacccgccgggggcggcgcccgggcggaggtggcggtccatgcgggtggcctgctcgacggagaaggtggtcatctgggagtacaccgtccagaagaggatgcaggtcgaccagatgggcagcagcttcaccaccatcttcacctcctccacctccgtcaccgtcgccgccggcgccgccgatgtctggttcgtcttcgccggcgacgctgccaggtccgcctccatgatggccgccctgtccaggcacctgcatggcaaaaacccagtcagcaacgtatgtacggatccaagtatctaacaagctaggtagcaagtaaaaaaaaattgacacgtgtgtacatatatatacgacagagatcatcagatgattttcagttgtgttcgtgttagcaaaacgcagatgccagatggatgtgaataagtgattttcagatggagatttaacaatagaatcgttcttttgataagtgtctctctcttcttcgatggtggccggattttatccattatacaaaaaaagatggatgtgaatgattgggcatcttttgtgatcaaaatgaagcgaattcttgaaggatctgaacttctctagcaatgcacgtataggccggccggtgcaccaatctgactgtttcagatatgcatctcgagcctcagttaatgcaatttgtgttgtgtacacaacacatccctgtgtcaccaccccacatatgctcgcgggcacaatgtcaaatttattctttttatttgcatatatgaaatttggtttacatgcttattaagtgaatatatcatactaatacatcttgtaTtttttttatatatttttacttttaggtgacggaaataaacgacaaaaaatgcacctctagactactgaattcacggctcgtcactctacttgtgatctgcttcgtccatcagccggccgcccaatttggtgaatgttatctctaattaattgggtgttctaatcaattcgatgtctccctcactttgaccactcattcatttcatctagtaccatgcatgatttgctcttgcgtgctgtgttagcaagagggcgaactgagttgtcgtcctcagcttcttctctatagctcgtgtccatctcagccttgacagtgacctaaccggtgaagccaattaagtaccgtgctaataatagattatagacttgtgatcgatagctagattaaccctcatgcctaggtagaagtacatactactagctagcaagctctaccagttcacatcctattggcaccagttgatactaaccatggaaaggctatgtggctagagctgaaaaaacggagtgttttgaaagctcagttctgccatgtattttcaaacgatacgatcgattgatagaatttaaatagcaagcaaatgttttggcaaaatcagcagccacaagaatccaatcctgaaatctgaaccctgatctcctatatgcaccggttgacagcagcagtattgtactatcagcagagcacatcgtgtcacgtaaactctgaagaaataacattcatccatgtctacttagcaatataatgcattttgcatcccaaccaaaacatgtttcttccagctatatattaatcaatcaacaaagctaggacagcaacgagtttactactaacggatgatgcctgatgacaaccacgagtgtatgatctgaagctaattttctatagtcgaggagatcatatatctaactgaactttgtatattattaggagaaaagagaaccacgtggcgattatacattctacggtttgagactgaggtggtattcttttcttctaaagatgaatattaagtttctttacgtaaaacaagatgatattaacatataattgattttgagttttaattattttaaatttaaaaaataaattaatatgatattttaaatcaactttcatatagaaagttttcacacagaacacatcatgtagcagtttgaaaaacgtgtcacgaaaatattaatcttcattcaactcttgtggaagaaaagagcgggatctcccctcaagaaagattgtgcgttgattacctgaggcggtcggtgtaggcaaccttggatgtgtggtagccgtggagctcgccggcgtcggcgggaagcggcaggcggcgcttcctccacgccgttgccagcacccgcccgatcacggtgagcgggctcccctcggggcggcggtaccggtacttgggcgtgccggcgacgaggacggcgacggcgaggaccatggcgacggcggagacgccgtagccccagccccggccgacgttgtcctggacgtacaccagcacggtgaccgcgaagagggagccgaggctgatgcagaagtagaagcggttgaagaagaacaccatggcgcgctcctcccgcgggtcgccgccgtcgaactggtcggagccgaacccggacacgttcgccttgagcccccccgcgcccgccgcgaccgtgtacagcgccgcgtacagcatcgccagctgccccccgcgcgccgactcgcaccgcaggtgcgccccggcgccgcgcgcgtccgcgcacggcggcggccgcatccccggcaccatcgtgtccaccgtcagcaagctcaccccctgcatggcagcagatcgtagtgagattcctgcaccgcgcgaggatgatcgaagatgtgttgttctgtgtgtgcgagagcgagagcgtacggtggcggcgatggtggcggagatggcgatggtgaggtagcggccgagcttggcgtcggcgaggaagccgccgacgagggcgaggaggttgagggtgcccatgaagttggtgacgatgttggcggacttggcgttggagaggtgcaggtcgccgacgaggtacgtcaccaggttcatcgagatgcccatcacgcacacccgctccgccagctccgtccctgcaaattaacaaccaccgccgccgccatggcatgtcatctcgagctcaaatcaaccaaactttttcccacgatcgaactcgcaagtcgcgaccagcagtgaagacgacgcgtacctaggataagcccggcgccgagccatcccccggtcttggacttgtccaccgggttaccccggtagtcgacaaccatgccgtcgtcggcgccaccaccatgacctcctccggcagcaacctgcacaaacatacatccagcttagcaactcaatcaccaaaccaaaccaccaatgaaaacatgcatgcactgtcggtgtgtgtggtggtatttttttttctagttacggccttataggcttacagggctgtaatcttgttactctatcaatagaacttcgtatcgtcttgtactagtcgttaaaaaaaatgcatgcatcctgctgcatgcacagatacagcacaagcaagcattgtttatgttaccattttcttctgctgctgagctgcactctgtctaccgctgctgcaagcagatgagaagagaaggcagcaggcacaggatagtgaggagagaaaacgtttgtgcagtgaggatgaggaggccggcctgatcgatcggaggatttatagagtggaggcgtgcagaggtggagaggttttgatcgcgagattttctctcgcaacttttttccttttccgcttgttggtttcgggtaaggtgaggtggacgagatgattgctgcacgtacgtacgtacgtacgcacgctgcctgcccccgcctttggcgcggaaaggacaagtaggtgatgacctgctggcgagttgtgtcgtgtggagggtggcctggcaaaatctctgggtgagggggattttgggccacggattgcagggctgggatcctctgcatgtgcggccccggtgaattgaatggaggtgtttggtttccatgtcttttattatctacgataaattggattcatgtcattgcaaatatatttatttagataaatactttataactcatctatttgtagccatgtcactatcatcacgtttttcatccatctatttttttttccgttttcttctgtcttcttcccttgagcgatggcgatgaggtggcaacacggagaagaagcacaatggtgttgtccttgccgcacgacttgcacgaccaccaggccgtggtggtggtgtcgtcattgggtactgcagcggcgtccgccttcatctcgaaacagtaggactgggcatcgtcgggcacggcggtgggcagtgttgagctcaacttccttctcaccacaaccgtcgcgctgtcgaagccacgcgcaccaacgcctggcactactgcttccaggcctgctctacaccaccacgtcgacctctgtattcgctccaccaagtggctcaccgacgtagcttctctagcctggcgtgcatccactcgttctccat More
CDS seq		atggttgctgccggaggaggtcatggtggtggcgccgacgacggcatggttgtcgactaccggggtaacccggtggacaagtccaagaccgggggatggctcggcgccgggcttatcctagggacggagctggcggagcgggtgtgcgtgatgggcatctcgatgaacctggtgacgtacctcgtcggcgacctgcacctctccaacgccaagtccgccaacatcgtcaccaacttcatgggcaccctcaacctcctcgccctcgtcggcggcttcctcgccgacgccaagctcggccgctacctcaccatcgccatctccgccaccatcgccgccaccgtacgctctcgctctcgcacacacagaacaacacatcttcgatcatcctcgcgcggtgcaggaatctcactacgatctgctgccatgcagggggtgagcttgctgacggtggacacgatggtgccggggatgcggccgccgccgtgcgcggacgcgcgcggcgccggggcgcacctgcggtgcgagtcggcgcgcggggggcagctggcgatgctgtacgcggcgctgtacacggtcgcggcgggcgcgggggggctcaaggcgaacgtgtccgggttcggctccgaccagttcgacggcggcgacccgcgggaggagcgcgccatggtgttcttcttcaaccgcttctacttctgcatcagcctcggctccctcttcgcggtcaccgtgctggtgtacgtccaggacaacgtcggccggggctggggctacggcgtctccgccgtcgccatggtcctcgccgtcgccgtcctcgtcgccggcacgcccaagtaccggtaccgccgccccgaggggagcccgctcaccgtgatcgggcggatacttggatccgtacatacgttgctgactgggtttttgccatgcaggtgcctggacagggcggccatcatggaggcggacctggcagcgtcgccggcgaagacgaaccagacatcggcggcgccggcggcgacggtgacggaggtggaggaggtgaagatggtggtgaagctgctgcccatctggtcgacctgcatcctcttctggacggtgtactcccagatgaccaccttctccgtcgagcaggccacccgcatggaccgccacctccgcccgggcgccgcccccggcgggttcgccatcccggcgggctccctctccgtcttcctcttcctctccatcctcctcttcacctccctcaacgagcgcgtcctcgtgccggcggcccgccgcctcacccgccgcccccagggcctcacctcgctccagcgcgtcggcgcgggcctcgtcctcgccaccgtcgccatggccacctccgcgctcgtcgagaagaagcggcgcgacgccgccaacgacggcggcggcggcggcatgatcagcgcgttctggctggtgccgcagttcttcctggtgggcgccggcgaggcgttcgcgtacgtcgggcagctggagttcttcatccgcgaggcgccggagcggatgaagtcgatgagcacggggctcttcctggtgacgctgtccatggggttcttcctcagcagcttcctcgtcttcgccgtcgacgccgccacgcgggggGcgtggatacggaacgacctcgacgccggcaggctggacctcttctactggatgctggccgtgctcggggtggccaacttcgccgtgttcctcgtgttcgcgaggcgccacgagtacaagcagcccgccggcacggccgccgtggtggtggcgcccgccgctgccaaggacggcggcgccggcgaggagaaggagatggacgacttcgtcgtggtcaaggaggccgtagaagggatggatgtgtag More
Protein seq		MVAAGGGHGGGADDGMVVDYRGNPVDKSKTGGWLGAGLILGTELAERVCVMGISMNLVTYLVGDLHLSNAKSANIVTNFMGTLNLLALVGGFLADAKLGRYLTIAISATIAATVRSRSRTHRTTHLRSSSRGAGISLRSAAMQGVSLLTVDTMVPGMRPPPCADARGAGAHLRCESARGGQLAMLYAALYTVAAGAGGLKANVSGFGSDQFDGGDPREERAMVFFFNRFYFCISLGSLFAVTVLVYVQDNVGRGWGYGVSAVAMVLAVAVLVAGTPKYRYRRPEGSPLTVIGRILGSVHTLLTGFLPCRCLDRAAIMEADLAASPAKTNQTSAAPAATVTEVEEVKMVVKLLPIWSTCILFWTVYSQMTTFSVEQATRMDRHLRPGAAPGGFAIPAGSLSVFLFLSILLFTSLNERVLVPAARRLTRRPQGLTSLQRVGAGLVLATVAMATSALVEKKRRDAANDGGGGGMISAFWLVPQFFLVGAGEAFAYVGQLEFFIREAPERMKSMSTGLFLVTLSMGFFLSSFLVFAVDAATRGAWIRNDLDAGRLDLFYWMLAVLGVANFAVFLVFARRHEYKQPAGTAAVVVAPAAAKDGGAGEEKEMDDFVVVKEAVEGMDV
Function		Protein NRT1/ PTR FAMILY 6.4 [UniProtKB/Swiss-Prot:Q9LVE0]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNaBo_02g0022440	OsNaBo_02g0022440.01	Chr02	24022110	24027466	-	NAM
CDS seq	atggttgctgccggaggaggtcatggtggtggcgccgacgacggcatggttgtcgactaccggggtaacccggtggacaagtccaagaccgggggatggctcggcgccgggcttatcctagggacggagctggcggagcgggtgtgcgtgatgggcatctcgatgaacctggtgacgtacctcgtcggcgacctgcacctctccaacgccaagtccgccaacatcgtcaccaacttcatgggcaccctcaacctcctcgccctcgtcggcggcttcctcgccgacgccaagctcggccgctacctcaccatcgccatctccgccaccatcgccgccaccgtacgctctcgctctcgcacacacagaacaacacatcttcgatcatcctcgcgcggtgcaggaatctcactacgatctgctgccatgcagggggtgagcttgctgacggtggacacgatggtgccggggatgcggccgccgccgtgcgcggacgcgcgcggcgccggggcgcacctgcggtgcgagtcggcgcgcggggggcagctggcgatgctgtacgcggcgctgtacacggtcgcggcgggcgcgggggggctcaaggcgaacgtgtccgggttcggctccgaccagttcgacggcggcgacccgcgggaggagcgcgccatggtgttcttcttcaaccgcttctacttctgcatcagcctcggctccctcttcgcggtcaccgtgctggtgtacgtccaggacaacgtcggccggggctggggctacggcgtctccgccgtcgccatggtcctcgccgtcgccgtcctcgtcgccggcacgcccaagtaccggtaccgccgccccgaggggagcccgctcaccgtgatcgggcggatacttggatccgtacatacgttgctgactgggtttttgccatgcaggtgcctggacagggcggccatcatggaggcggacctggcagcgtcgccggcgaagacgaaccagacatcggcggcgccggcggcgacggtgacggaggtggaggaggtgaagatggtggtgaagctgctgcccatctggtcgacctgcatcctcttctggacggtgtactcccagatgaccaccttctccgtcgagcaggccacccgcatggaccgccacctccgcccgggcgccgcccccggcgggttcgccatcccggcgggctccctctccgtcttcctcttcctctccatcctcctcttcacctccctcaacgagcgcgtcctcgtgccggcggcccgccgcctcacccgccgcccccagggcctcacctcgctccagcgcgtcggcgcgggcctcgtcctcgccaccgtcgccatggccacctccgcgctcgtcgagaagaagcggcgcgacgccgccaacgacggcggcggcggcggcatgatcagcgcgttctggctggtgccgcagttcttcctggtgggcgccggcgaggcgttcgcgtacgtcgggcagctggagttcttcatccgcgaggcgccggagcggatgaagtcgatgagcacggggctcttcctggtgacgctgtccatggggttcttcctcagcagcttcctcgtcttcgccgtcgacgccgccacgcgggggGcgtggatacggaacgacctcgacgccggcaggctggacctcttctactggatgctggccgtgctcggggtggccaacttcgccgtgttcctcgtgttcgcgaggcgccacgagtacaagcagcccgccggcacggccgccgtggtggtggcgcccgccgctgccaaggacggcggcgccggcgaggagaaggagatggacgacttcgtcgtggtcaaggaggccgtagaagggatggatgtgtag More
Protein seq	MVAAGGGHGGGADDGMVVDYRGNPVDKSKTGGWLGAGLILGTELAERVCVMGISMNLVTYLVGDLHLSNAKSANIVTNFMGTLNLLALVGGFLADAKLGRYLTIAISATIAATVRSRSRTHRTTHLRSSSRGAGISLRSAAMQGVSLLTVDTMVPGMRPPPCADARGAGAHLRCESARGGQLAMLYAALYTVAAGAGGLKANVSGFGSDQFDGGDPREERAMVFFFNRFYFCISLGSLFAVTVLVYVQDNVGRGWGYGVSAVAMVLAVAVLVAGTPKYRYRRPEGSPLTVIGRILGSVHTLLTGFLPCRCLDRAAIMEADLAASPAKTNQTSAAPAATVTEVEEVKMVVKLLPIWSTCILFWTVYSQMTTFSVEQATRMDRHLRPGAAPGGFAIPAGSLSVFLFLSILLFTSLNERVLVPAARRLTRRPQGLTSLQRVGAGLVLATVAMATSALVEKKRRDAANDGGGGGMISAFWLVPQFFLVGAGEAFAYVGQLEFFIREAPERMKSMSTGLFLVTLSMGFFLSSFLVFAVDAATRGAWIRNDLDAGRLDLFYWMLAVLGVANFAVFLVFARRHEYKQPAGTAAVVVAPAAAKDGGAGEEKEMDDFVVVKEAVEGMDV More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNaBo_02g0022440	OsNaBo_02g0022440.02	Chr02	24022152	24026605	-	IsoSeq
CDS seq	cctcactgcacaaacgttttctctcctcactatcctgtgcctgctgccttctcttctcatctgcttgcagcagcggtagacagagtgcagctcagcagcagaagaaaatggttgctgccggaggaggtcatggtggtggcgccgacgacggcatggttgtcgactaccggggtaacccggtggacaagtccaagaccgggggatggctcggcgccgggctta More
Protein seq	PHCTNVFSPHYPVPAAFSSHLLAAAVDRVQLSSRRKWLLPEEVMVVAPTTAWLSTTGVTRWTSPRPGDGSAPGL

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.771992	4.841676	4.196541

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_02g0580900	RBH	2.524133	3.092240	3.281504
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os02g48570	SBH	0.037693	0.0	0.782620
Nipponbare \| IRGSP 1.0 \| RAP-db	Os02g0580900	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_02g0022540	RBH	2.144648	20.759377	9.021498
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_02g0022650	RBH	0.711273	2.032275	2.361794
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_02g0022640	RBH	2.004732	5.031969	6.771778
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_02g0022340	RBH	0.269353	0.087597	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_02g0022280	RBH	7.545002	0.000000	7.586216
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_02G0460100	SBH	2.2023115	55.3580745	3.9440735
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_02g0022020	RBH	0.217877	0.0	0.640289
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_02G0394500	RBH	16.6316615	4.3428335	0.1382065
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_02g0022450	RBH	0.070777	0.000000	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_02g0022190	RBH	0.155898	1.291044	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_02g0022670	RBH	0.000000	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_02g0022350	RBH	0.098492	0.0	2.075936
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_02g0022150	RBH	0.436558	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_02G022600	RBH	0.261783	0.0	3.536507
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_04g0015740	RBH	0.0	0.0	0.000000

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.