Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0022640 | OGI:02063720 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:22588928-22593435 | ||||||||
| Gene Symbol | NRT1.5B, OsNRT1.5B | ||||||||||
| DNA seq | agtgaaaaccgatcagttttattaacattgacaatgtgttttcatagaagtagttctgaaagcaaaattgaaagctctgggaaatttacaacactttttttttttcaaaatatcttcacttggcaaacattacctcagctcatctatctccattaacatttttcaggagattgaagctagcatcatatcatatcatacactgcactctgcacgaaaactgctacgcacactacctcaaaaacccaaacctctatactacgattgcacactaacattcgtacacactacacgtctacacatccatcccttctacggcctccttgaccacgacgaagtcgtccatctccttctcctcgccggcgccgccgtccttggcagcggcgggcgccaccaccacggcggccgtgccggcgggctgcttgtactcgtggcgcctcgcgaacacgaggaacacggcgaagttggccaccccgagcacggccagcatccagtagaagaggtccagcctgccggcgtcgaggtcgttccgtatccacgccccccgcgtggcggcgtcgacggcgaagacgaggaagctgctgaggaagaatcccatggacagcgtcaccaggaagagccccgtgctcatcgacttcatccgctccggcgcctcgcggatgaagaactccagctgcccgacgtacgcgaacgcctcgccggcgcccaccaggaagaactgcggcaccagccagaacgcgctgatcatgccgccgccgccgccgtcgttggcggcgtcgcgccgcttcttctcgacgagcgcggaggtggccatggcgacggtggcgaggacgaggcccgcgccgacgcgctggagcgaggtgaggccctgggggcggcgggtgaggcggcgggccgccggcacgaggacgcgctcgttgagggaggtgaagaggaggatggagaggaagaggaagacggagagggagcccgccgggatggcgaacccgccgggggcggcgcccgggcggaggtggcggtccatgcgggtggcctgctcgacggagaaggtggtcatctgggagtacaccgtccagaagaggatgcaggtcgaccagatgggcagcagcttcaccaccatcttcacctcctccacctccgtcaccgtcgccgccggcgccgccgatgtctggttcgtcttcgccggcgacgctgccaggtccgcctccatgatggccgccctgtccaggcacctgcatggcaaaaacccagtcagcaacgtatgtacggatccaagtatctaacaagctaggtagcaagtaaaaaaaaattgacacgtgtgtacatatatatacgacagagatcatcagatgattttcagttgtgttcgtgttagcaaaacgcagatgccagatggatgtgaataagtgattttcagatggagatttaacaatagaatcgttcttttgataagtgtctctctcttcttcgatggtggccggattttatccattatacaaaaaaagatggatgtgaatgattgggcatcttttgtgatcaaaatgaagcgaattctttaaggatctgaacttctctagcaatgcacgtataggccggccggtgcaccaatctgactgtttcagatatgcatctcgagcctcagttaatgcaatttgtgttgtgtacacaacacatccctgtgtcaccaccccacatatgctcgcgggcacaatgtcaaatttattctttttatttgcatatatgaaatttggtttacatgcttattaagtgaatatatcatactaatacatcttgtattttttttatatatttttacttttaggtgacggaaataaacgacaaaaaatccacctctagactactgaattcacggctcgtcactctacttgtgatctgcttcgtccatcagccggccgcccaatttggtgaatgttatctctaattaattgggtgtctcacatactaattgggtgttctaatcaattcgatgtctcactcactttgaccactcattcatttcatctagtaccatgcatgatttgctcttgcgtgctgtgttagcaagagggcgaactgagttgtcgtcctcagcttcttctctatagctcgtgtccatctcagccttgacagtgacctaaccggtgaagccaattaagtaccgtgctaataatagattatagacttgtgatcgatagctagattaaccctcatgcctaggtagaagtacatactactagctagcaagctctaccagttcacatcctattggcaccagttgatactaaccatggaaaggctatgtggctagagctgaaaaaacggagtgttttgaaagctcagttctgccatgtattttcaaacgatacgatcgattgatagaatttaaatagcaagcaaatgttttggcaaaatcagcagccacaagaatccaatcctgaaatctgaaccctgatctcctatatgcaccggttgacagcagcagtattgtactatcagcagagcacatcgtgtcacgtaaactctgaagaaataacattcatccatgtctacttagcaatataatgcattttgcatcccaaccaaaacatgtttcttccagctatatattaatcaatcaacaaagctaggacagcaacgagttaactaacggatgatgcctgatgacaaccacgagtgtatgatctgaagctaattttctatagtcgaggggatcatatatctaactgaactttgtatattattaggagaaaagagaaccacgtggcgattatacattctacggtttgagactgaggtggtattcttttcttctgaagatgaatattaagttttttttacgtaaaacgagatgatattaacatataattgattttgagttttaattatttcaaatttaaaaaataaattaatatgatattttaaagcaactttcatatagaaagttttcacacagaacacaccatttagcagtttgaaaaacgtgtcacgaaaatattaatctccattcaactcttgtgggagaaaagagcgggatctcccctcatgaaagattgtgcgttgattacctgaggcggtcggtgtaggcaaccttggatgtgtggtagccgtggagctcgccggcgtcggcggggagcggcaggcggcgcttcctccacgccgttgccagcacccgcccgatcacggtgagcgggctcccctcggggcggcggtaccggtacttgggcgtgccggcgacgaggacggcgacggcgaggaccatggcgacggcggagacgccgtagccccagccccggccgacgttgtcctggacgtacaccagcacggtgaccgcgaagagggagccgaggctgatgcagaagtagaagcggttgaagaagaacaccatggcgcgctcctcccgcgggtcgccgccgtcgaactggtcggagccgaacccggacacgttcgccttgagcccccccgcgcccgccgcgaccgtgtacagcgccgcgtacagcatcgccagctgccccccgcgcgccggctcgcaccgcaggtgcgccccggcgccgcgcgcgtccgcgcacggcggcggccgcatccccggcaccatcgtgtccaccgtcagcaagctcaccccctgcatggcagcagatcgtagtgagattcctgcaccgcgcgaggatgatcgaagatgtgttgttctgtgtgtgcgagagcgagagcgtacggtggcggcgatggtggcggagatggcgatggtgaggtagcggccgagcttggcgtcggcgaggaagccgccgacgagggcgaggaggttgagggtgcccatgaagttggtgacgatgttggcggacttggcgttggagaggtgcaggtcgccgacgaggtacgtcaccaggttcatcgagatgcccatcacgcacacccgctccgccagctccgtccctgcaaattaacaaccaccgccgccgccatggcatgtcatctcgagctcaaatcaaccaaactttttcccacgatcgaactcgcgagtcgcgaccagcagtgaagacgacgcgtacctaggataagcccggcgccgagccatcccccggtcttggacttgtccaccgggttaccccggtagtcgacaaccatgccgtcgtcggcgccaccaccatgacctcctccggcagcaacctgcacaaacatacatccagcttaacaactcaatcaccaaaccaaaccaccaatgaaaacatgcatgcactgtcggtgtgtgcgtggtggtatattttttttttctagttacggctttataggcttacaggattgtaatcttgttatttttttcctgctctaatagaacttcgtataaaaaaaatacatgcatcctgctgcatgcacagatacagcacaagcaagcattgtttatgttaccattttcttctgctgctgagatgcactgtctaccgctgctgcaagcagatgagaagagaaggcagcaggcacaggatagtgaggagagaaaacgtttgtgcagtgaggat
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| CDS seq | atggttgctgccggaggaggtcatggtggtggcgccgacgacggcatggttgtcgactaccggggtaacccggtggacaagtccaagaccgggggatggctcggcgccgggcttatcctagggacggagctggcggagcgggtgtgcgtgatgggcatctcgatgaacctggtgacgtacctcgtcggcgacctgcacctctccaacgccaagtccgccaacatcgtcaccaacttcatgggcaccctcaacctcctcgccctcgtcggcggcttcctcgccgacgccaagctcggccgctacctcaccatcgccatctccgccaccatcgccgccaccggggtgagcttgctgacggtggacacgatggtgccggggatgcggccgccgccgtgcgcggacgcgcgcggcgccggggcgcacctgcggtgcgagccggcgcgcggggggcagctggcgatgctgtacgcggcgctgtacacggtcgcggcgggcgcgggggggctcaaggcgaacgtgtccgggttcggctccgaccagttcgacggcggcgacccgcgggaggagcgcgccatggtgttcttcttcaaccgcttctacttctgcatcagcctcggctccctcttcgcggtcaccgtgctggtgtacgtccaggacaacgtcggccggggctggggctacggcgtctccgccgtcgccatggtcctcgccgtcgccgtcctcgtcgccggcacgcccaagtaccggtaccgccgccccgaggggagcccgctcaccgtgatcgggcgggtgctggcaacggcgtggaggaagcgccgcctgccgctccccgccgacgccggcgagctccacggctaccacacatccaaggtcactgtcaaggctgagatggacacgagctatagagaagaagctgaggacgacaactcagttcgccctcttgctaacacagcacgcaagagcaaatcatgcatggtactagatgaaatgaatgagtggtcaaagtgcctggacagggcggccatcatggaggcggacctggcagcgtcgccggcgaagacgaaccagacatcggcggcgccggcggcgacggtgacggaggtggaggaggtgaagatggtggtgaagctgctgcccatctggtcgacctgcatcctcttctggacggtgtactcccagatgaccaccttctccgtcgagcaggccacccgcatggaccgccacctccgcccgggcgccgcccccggcgggttcgccatcccggcgggctccctctccgtcttcctcttcctctccatcctcctcttcacctccctcaacgagcgcgtcctcgtgccggcggcccgccgcctcacccgccgcccccagggcctcacctcgctccagcgcgtcggcgcgggcctcgtcctcgccaccgtcgccatggccacctccgcgctcgtcgagaagaagcggcgcgacgccgccaacgacggcggcggcggcggcatgatcagcgcgttctggctggtgccgcagttcttcctggtgggcgccggcgaggcgttcgcgtacgtcgggcagctggagttcttcatccgcgaggcgccggagcggatgaagtcgatgagcacggggctcttcctggtgacgctgtccatgggattcttcctcagcagcttcctcgtcttcgccgtcgacgccgccacgcggggggcgtggatacggaacgacctcgacgccggcaggctggacctcttctactggatgctggccgtgctcggggtggccaacttcgccgtgttcctcgtgttcgcgaggcgccacgagtacaagcagcccgccggcacggccgccgtggtggtggcgcccgccgctgccaaggacggcggcgccggcgaggagaaggagatggacgacttcgtcgtggtcaaggaggccgtagaagggatggatgtgtag
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| Protein seq | MVAAGGGHGGGADDGMVVDYRGNPVDKSKTGGWLGAGLILGTELAERVCVMGISMNLVTYLVGDLHLSNAKSANIVTNFMGTLNLLALVGGFLADAKLGRYLTIAISATIAATGVSLLTVDTMVPGMRPPPCADARGAGAHLRCEPARGGQLAMLYAALYTVAAGAGGLKANVSGFGSDQFDGGDPREERAMVFFFNRFYFCISLGSLFAVTVLVYVQDNVGRGWGYGVSAVAMVLAVAVLVAGTPKYRYRRPEGSPLTVIGRVLATAWRKRRLPLPADAGELHGYHTSKVTVKAEMDTSYREEAEDDNSVRPLANTARKSKSCMVLDEMNEWSKCLDRAAIMEADLAASPAKTNQTSAAPAATVTEVEEVKMVVKLLPIWSTCILFWTVYSQMTTFSVEQATRMDRHLRPGAAPGGFAIPAGSLSVFLFLSILLFTSLNERVLVPAARRLTRRPQGLTSLQRVGAGLVLATVAMATSALVEKKRRDAANDGGGGGMISAFWLVPQFFLVGAGEAFAYVGQLEFFIREAPERMKSMSTGLFLVTLSMGFFLSSFLVFAVDAATRGAWIRNDLDAGRLDLFYWMLAVLGVANFAVFLVFARRHEYKQPAGTAAVVVAPAAAKDGGAGEEKEMDDFVVVKEAVEGMDV |
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| Function | Protein NRT1/ PTR FAMILY 6.4 [UniProtKB/Swiss-Prot:Q9LVE0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0022640 | OsCMeo_02g0022640.01 | Chr02 | 22588928 | 22593435 | - | NAM | ||
| CDS seq | atggttgctgccggaggaggtcatggtggtggcgccgacgacggcatggttgtcgactaccggggtaacccggtggacaagtccaagaccgggggatggctcggcgccgggcttatcctagggacggagctggcggagcgggtgtgcgtgatgggcatctcgatgaacctggtgacgtacctcgtcggcgacctgcacctctccaacgccaagtccgccaacatcgtcaccaacttcatgggcaccctcaacctcctcgccctcgtcggcggcttcctcgccgacgccaagctcggccgctacctcaccatcgccatctccgccaccatcgccgccaccggggtgagcttgctgacggtggacacgatggtgccggggatgcggccgccgccgtgcgcggacgcgcgcggcgccggggcgcacctgcggtgcgagccggcgcgcggggggcagctggcgatgctgtacgcggcgctgtacacggtcgcggcgggcgcgggggggctcaaggcgaacgtgtccgggttcggctccgaccagttcgacggcggcgacccgcgggaggagcgcgccatggtgttcttcttcaaccgcttctacttctgcatcagcctcggctccctcttcgcggtcaccgtgctggtgtacgtccaggacaacgtcggccggggctggggctacggcgtctccgccgtcgccatggtcctcgccgtcgccgtcctcgtcgccggcacgcccaagtaccggtaccgccgccccgaggggagcccgctcaccgtgatcgggcgggtgctggcaacggcgtggaggaagcgccgcctgccgctccccgccgacgccggcgagctccacggctaccacacatccaaggtcactgtcaaggctgagatggacacgagctatagagaagaagctgaggacgacaactcagttcgccctcttgctaacacagcacgcaagagcaaatcatgcatggtactagatgaaatgaatgagtggtcaaagtgcctggacagggcggccatcatggaggcggacctggcagcgtcgccggcgaagacgaaccagacatcggcggcgccggcggcgacggtgacggaggtggaggaggtgaagatggtggtgaagctgctgcccatctggtcgacctgcatcctcttctggacggtgtactcccagatgaccaccttctccgtcgagcaggccacccgcatggaccgccacctccgcccgggcgccgcccccggcgggttcgccatcccggcgggctccctctccgtcttcctcttcctctccatcctcctcttcacctccctcaacgagcgcgtcctcgtgccggcggcccgccgcctcacccgccgcccccagggcctcacctcgctccagcgcgtcggcgcgggcctcgtcctcgccaccgtcgccatggccacctccgcgctcgtcgagaagaagcggcgcgacgccgccaacgacggcggcggcggcggcatgatcagcgcgttctggctggtgccgcagttcttcctggtgggcgccggcgaggcgttcgcgtacgtcgggcagctggagttcttcatccgcgaggcgccggagcggatgaagtcgatgagcacggggctcttcctggtgacgctgtccatgggattcttcctcagcagcttcctcgtcttcgccgtcgacgccgccacgcggggggcgtggatacggaacgacctcgacgccggcaggctggacctcttctactggatgctggccgtgctcggggtggccaacttcgccgtgttcctcgtgttcgcgaggcgccacgagtacaagcagcccgccggcacggccgccgtggtggtggcgcccgccgctgccaaggacggcggcgccggcgaggagaaggagatggacgacttcgtcgtggtcaaggaggccgtagaagggatggatgtgtag
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| Protein seq | MVAAGGGHGGGADDGMVVDYRGNPVDKSKTGGWLGAGLILGTELAERVCVMGISMNLVTYLVGDLHLSNAKSANIVTNFMGTLNLLALVGGFLADAKLGRYLTIAISATIAATGVSLLTVDTMVPGMRPPPCADARGAGAHLRCEPARGGQLAMLYAALYTVAAGAGGLKANVSGFGSDQFDGGDPREERAMVFFFNRFYFCISLGSLFAVTVLVYVQDNVGRGWGYGVSAVAMVLAVAVLVAGTPKYRYRRPEGSPLTVIGRVLATAWRKRRLPLPADAGELHGYHTSKVTVKAEMDTSYREEAEDDNSVRPLANTARKSKSCMVLDEMNEWSKCLDRAAIMEADLAASPAKTNQTSAAPAATVTEVEEVKMVVKLLPIWSTCILFWTVYSQMTTFSVEQATRMDRHLRPGAAPGGFAIPAGSLSVFLFLSILLFTSLNERVLVPAARRLTRRPQGLTSLQRVGAGLVLATVAMATSALVEKKRRDAANDGGGGGMISAFWLVPQFFLVGAGEAFAYVGQLEFFIREAPERMKSMSTGLFLVTLSMGFFLSSFLVFAVDAATRGAWIRNDLDAGRLDLFYWMLAVLGVANFAVFLVFARRHEYKQPAGTAAVVVAPAAAKDGGAGEEKEMDDFVVVKEAVEGMDV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0022640 | OsCMeo_02g0022640.02 | Chr02 | 22588974 | 22593435 | - | IsoSeq | ||
| CDS seq | tcctcactgcacaaacgttttctctcctcactatcctgtgcctgctgccttctcttctcatctgcttgcagcagcggtagacagtgcatctcagcagcagaagaaaatggttgctgccggaggaggtcatggtggtggcgccgacgacggcatggttgtcgactaccg |
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| Protein seq | SSLHKRFLSSLSCACCLLFSSACSSGRQCISAAEENGCCRRRSWWWRRRRHGCRLP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.004732 | 5.031969 | 6.771778 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0580900 | RBH | 2.524133 | 3.092240 | 3.281504 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g48570 | SBH | 0.037693 | 0.0 | 0.782620 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0580900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0022540 | RBH | 2.144648 | 20.759377 | 9.021498 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0022650 | RBH | 0.711273 | 2.032275 | 2.361794 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0016690 | RBH | 0.0 | 0.0 | 0.640865 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0022340 | RBH | 0.269353 | 0.087597 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0022280 | RBH | 7.545002 | 0.000000 | 7.586216 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0484900 | SBH | 4.1437445 | 0.206135 | 2.06368 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0022020 | RBH | 0.217877 | 0.0 | 0.640289 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0394500 | RBH | 16.6316615 | 4.3428335 | 0.1382065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0022450 | RBH | 0.070777 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0022190 | RBH | 0.155898 | 1.291044 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0022670 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0022350 | RBH | 0.098492 | 0.0 | 2.075936 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0022150 | RBH | 0.436558 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G022600 | RBH | 0.261783 | 0.0 | 3.536507 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0022440 | RBH | 0.771992 | 4.841676 | 4.196541 |
