Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0016540 | OGI:02046650 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:17415467-17419196 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cgaattccttttagacttgatcatatttcttggctgtataaacttacattaggttgcatatggctaaaaattaagtagacattattctgtgtatatatgatttctagaagccagctgttacaaaattaagtttatttaccagggttcgagtttcttgatgtggatcgggggaatttgaaggccacatcaggattaaccgaacaggctcttattgtttctcattaactgatgaggtcgttggcacaccttgatcttactaccggctggttaatgaactgctaccaagtgaaagttgagattgatactgagtgctccattgtcatacccatgaccatgacaagttcatacacaaaaaatctgcacaataaagtagaaacaagtaaaaacaaatccagaattatgcgtcgtagcttaataaacattgactgctggatattatgagaagataaaaaggaatgtgcatttgatttattgatacttcagcaaagagttagagcaaagcgcgcgcacacaccagagcacagcgtacaggtggcactggcaacataattctagatagcattaaaaatgtaaatgaactgggagtgagcaagtattggagaaacacctcttttttcagatatttaggtgtattggctcaaaaggtcccatgtttcttaccaagggaaataacaatactacatattttccgttcctgcatgcaatagtcaatactcaatagacacagttacaccatttatctttatctaacaaaggcgttaattataacagcaaaaccgagtcattatttattggaataaactgtgtcccgtactcaaatacttagagcaaaagagtgagccaaaatgctacacgttatattctgagttgaatcaatgctAaaaaactaagataagcaagaaaaagcggtgattgttctgcaacagtatcggacaacatatacctctggatttttctccaaacttgtaatgagaagttgataacattcattgaagacttgaacatttgaagttctgacagattgacaaaacctaagatcttgcatgttgcactcatattaaggtattgttgtcaagcaacaaaccaaggaactgcaagtctgcaacagcaacaccacggttcccaaatttagcacatggcatttagtaagatagagcacaaatgctatatatatgaaaacaacattcgatcaattcaaatgtgtaatgaaaagcagaagtcaaaacttacatggcatgtgtctcagcccaaaatgggctaaaatatgcttggtctttgtcctacggctgaactatgcactgtaccaagacaatatatggcgtggtactagaaatattagccaaataatttaacaacaaagtactgaaatggaactgtttttcccgaaattagaatattccttgaatgatatacaaaatgctggacaagatctttgctttcatactgctctctaggaatcctgagaagaacaaaaatttaacttgttttgaccaaaacaattcctcaacatgattcctccgaaaatcatttgcagtcattatcatccttcaggaaaccgttttcaatcacccctttcatcccttatcaaaattataagctctcaaattcctcttgcttatttttaaacaaagccttcaatgcggcgtaatagcagaatctgtcagtactgtacagctgtgctgcttcagacttcagggaatagtccacaaccataggaaaatgtcattggtgagaccagtgtaccactccacgtggaagaagtgttacatacattttacagtcaaccagccctgttaggcataagtaaatgattagcatacttgaatgttacttcatttggagtgcacttattcctaagcatctcagctacaagctcctctgcatcctgccaccgctcagctctacacaaacccttcaatgtagagttataagaaatagcatcaggcttacatgacatggtgctcaataacttgagggcatcgtccaaacggccttgttcagaaaagccattgataagggcgttatatgtaaaaatatcaggtgtacttccatagtttggcatttgctcaagaacctcaattgcacgatcaaccagccctttttggcacaaggaattgattaatatattgaacgttacttcatttgggggacaatcctttccaaccatctcagctataagctccccagcatcttcccatcgtgcagctctgcacaaacccttcaacacagcattgtagctaaagatatcaggcttgcacggcatgcttctaaataactgaatggcaacctctacaagaccttgttcagaaaagccattaagaagactgctgtatgtgacaatgtcaggcgtacatctgtaccttggcatttgctcaaacacttgggttgcatagttgaccagaccattttggcaaagcgtgtcaatcagtatattaaaggtcatttcaattagagggcaatcatccctaaacatctgagcaataagctcactagcatcatgccatcgttcagctctacaaaagcccttcaacacagcattaaaaccaagggcatcaggcttacacaccatgctgttcagcaacctgagggcatcatccacgcgccctcgttcagacaaggaattgatgattatattgtaattgacggtgtcaggctcacacccgtacttctccatttgctcaagaacttcgactgcgctgtccactaaattattttggcacaaggaactgatcagcatgctgaatgtagcttcgtttggcgagcaacccttcctaaccatctcagccatcagctcaccgatatcctcccatcgctcggcgatgcataaacccttcaacgcagcattgtagcaaacggtgttgggcttgcatagcatagtgttgagaaggtcgagggcttggtcgacatgcccttgctctgagaatccattgataagggtgctgtaaatgacaacgtcaggagtgcatccatacctaggcatttggtcgagcagttggacggcgcggtcgagcaacccgttctggcagaaagaacggatctgcgtggcgaatgtcacctcgttgggagggcaacggttcctgatcatctctgccatgagctcctcggcctcctcccacttcttggcgatgcacaagcccttgagcacggtgttgtaggtgtaggtgtcgggcgccacgggcatggaggcgatgaggcggagcgcgtcgtcgaggcggccggagcggcagtacccgtcgatgagcgcggtgtaggtgacgacgttggccgcgccggtcgccctggccgcgccgagcacgcgctccgcgtcggcgaggcggccgtcgcggcagtagcccgcgacgagggtgttgtgcgagacggcgtccgcggcggcggccgccttgagcgcgtcgagcacgcgctccgcgtcggcgaggcggcgggtggcgcagagcttcttgatgagtatgttgcaggagatgagggcggcggcgggggcgggcagcgcgccggggaggaggaggaggcggagcgcggcgtcgaggtccccgagctggacgaggcggcgcagcgtctggccggggcggggcggcgcggccgggttgacccatatggaggagctggccctgcggttcgcccacctggaggaggcggcggcgaggcgggggcgcccgtgttgcttggcgcggcgagggaaagagaaggggtggtgggcggcgggcggcgaggaggaggaggaggtgatggccat
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| CDS seq | atggccatcacctcctcctcctcctcgccgcccgccgcccaccaccccttctctttccctcgccgcgccaagcaacacgggcgcccccgcctcgccgccgcctcctccaggtgggcgaaccgcagggccagctcctccatatgggtcaacccggccgcgccgccccgccccggccagacgctgcgccgcctcgtccagctcggggacctcgacgccgcgctccgcctcctcctcctccccggcgcgctgcccgcccccgccgccgccctcatctcctgcaacatactcatcaagaagctctgcgccacccgccgcctcgccgacgcggagcgcgtgctcgacgcgctcaaggcggccgccgccgcggacgccgtctcgcacaacaccctcgtcgcgggctactgccgcgacggccgcctcgccgacgcggagcgcgtgctcggcgcggccagggcgaccggcgcggccaacgtcgtcacctacaccgcgctcatcgacgggtactgccgctccggccgcctcgacgacgcgctccgcctcatcgcctccatgcccgtggcgcccgacacctacacctacaacaccgtgctcaagggcttgtgcatcgccaagaagtgggaggaggccgaggagctcatggcagagatgatcaggaaccgttgccctcccaacgaggtgacattcgccacgcagatccgttctttctgccagaacgggttgctcgaccgcgccgtccaactgctcgaccaaatgcctaggtatggatgcactcctgacgttgtcatttacagcacccttatcaatggattctcagagcaagggcatgtcgaccaagccctcgaccttctcaacactatgctatgcaagcccaacaccgtttgctacaatgctgcgttgaagggtttatgcatcgccgagcgatgggaggatatcggtgagctgatggctgagatggttaggaagggttgctcgccaaacgaagctacattcagcatgctgatcagttccttgtgccaaaataatttagtggacagcgcagtcgaagttcttgagcaaatggagaagtacgggtgtgagcctgacaccgtcaattacaatataatcatcaattccttgtctgaacgagggcgcgtggatgatgccctcaggttgctgaacagcatggtgtgtaagcctgatgcccttggttttaatgctgtgttgaagggcttttgtagagctgaacgatggcatgatgctagtgagcttattgctcagatgtttagggatgattgccctctaattgaaatgacctttaatatactgattgacacgctttgccaaaatggtctggtcaactatgcaacccaagtgtttgagcaaatgccaaggtacagatgtacgcctgacattgtcacatacagcagtcttcttaatggcttttctgaacaaggtcttgtagaggttgccattcagttatttagaagcatgccgtgcaagcctgatatctttagctacaatgctgtgttgaagggtttgtgcagagctgcacgatgggaagatgctggggagcttatagctgagatggttggaaaggattgtcccccaaatgaagtaacgttcaatatattaatcaattccttgtgccaaaaagggctggttgatcgtgcaattgaggttcttgagcaaatgccaaactatggaagtacacctgatatttttacatataacgcccttatcaatggcttttctgaacaaggccgtttggacgatgccctcaagttattgagcaccatgtcatgtaagcctgatgctatttcttataactctacattgaagggtttgtgtagagctgagcggtggcaggatgcagaggagcttgtagctgagatgcttaggaataagtgcactccaaatgaagtaacattcaagtatgctaatcatttacttatgcctaacagggctggttga
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| Protein seq | MAITSSSSSPPAAHHPFSFPRRAKQHGRPRLAAASSRWANRRASSSIWVNPAAPPRPGQTLRRLVQLGDLDAALRLLLLPGALPAPAAALISCNILIKKLCATRRLADAERVLDALKAAAAADAVSHNTLVAGYCRDGRLADAERVLGAARATGAANVVTYTALIDGYCRSGRLDDALRLIASMPVAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSMVCKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTMSCKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTFKYANHLLMPNRAG |
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| Function | Pentatricopeptide repeat-containing protein At1g09900 [UniProtKB/Swiss-Prot:Q3EDF8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0016540 | OsNaBo_02g0016540.01 | Chr02 | 17415467 | 17419196 | - | NAM | ||
| CDS seq | atggccatcacctcctcctcctcctcgccgcccgccgcccaccaccccttctctttccctcgccgcgccaagcaacacgggcgcccccgcctcgccgccgcctcctccaggtgggcgaaccgcagggccagctcctccatatgggtcaacccggccgcgccgccccgccccggccagacgctgcgccgcctcgtccagctcggggacctcgacgccgcgctccgcctcctcctcctccccggcgcgctgcccgcccccgccgccgccctcatctcctgcaacatactcatcaagaagctctgcgccacccgccgcctcgccgacgcggagcgcgtgctcgacgcgctcaaggcggccgccgccgcggacgccgtctcgcacaacaccctcgtcgcgggctactgccgcgacggccgcctcgccgacgcggagcgcgtgctcggcgcggccagggcgaccggcgcggccaacgtcgtcacctacaccgcgctcatcgacgggtactgccgctccggccgcctcgacgacgcgctccgcctcatcgcctccatgcccgtggcgcccgacacctacacctacaacaccgtgctcaagggcttgtgcatcgccaagaagtgggaggaggccgaggagctcatggcagagatgatcaggaaccgttgccctcccaacgaggtgacattcgccacgcagatccgttctttctgccagaacgggttgctcgaccgcgccgtccaactgctcgaccaaatgcctaggtatggatgcactcctgacgttgtcatttacagcacccttatcaatggattctcagagcaagggcatgtcgaccaagccctcgaccttctcaacactatgctatgcaagcccaacaccgtttgctacaatgctgcgttgaagggtttatgcatcgccgagcgatgggaggatatcggtgagctgatggctgagatggttaggaagggttgctcgccaaacgaagctacattcagcatgctgatcagttccttgtgccaaaataatttagtggacagcgcagtcgaagttcttgagcaaatggagaagtacgggtgtgagcctgacaccgtcaattacaatataatcatcaattccttgtctgaacgagggcgcgtggatgatgccctcaggttgctgaacagcatggtgtgtaagcctgatgcccttggttttaatgctgtgttgaagggcttttgtagagctgaacgatggcatgatgctagtgagcttattgctcagatgtttagggatgattgccctctaattgaaatgacctttaatatactgattgacacgctttgccaaaatggtctggtcaactatgcaacccaagtgtttgagcaaatgccaaggtacagatgtacgcctgacattgtcacatacagcagtcttcttaatggcttttctgaacaaggtcttgtagaggttgccattcagttatttagaagcatgccgtgcaagcctgatatctttagctacaatgctgtgttgaagggtttgtgcagagctgcacgatgggaagatgctggggagcttatagctgagatggttggaaaggattgtcccccaaatgaagtaacgttcaatatattaatcaattccttgtgccaaaaagggctggttgatcgtgcaattgaggttcttgagcaaatgccaaactatggaagtacacctgatatttttacatataacgcccttatcaatggcttttctgaacaaggccgtttggacgatgccctcaagttattgagcaccatgtcatgtaagcctgatgctatttcttataactctacattgaagggtttgtgtagagctgagcggtggcaggatgcagaggagcttgtagctgagatgcttaggaataagtgcactccaaatgaagtaacattcaagtatgctaatcatttacttatgcctaacagggctggttga
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| Protein seq | MAITSSSSSPPAAHHPFSFPRRAKQHGRPRLAAASSRWANRRASSSIWVNPAAPPRPGQTLRRLVQLGDLDAALRLLLLPGALPAPAAALISCNILIKKLCATRRLADAERVLDALKAAAAADAVSHNTLVAGYCRDGRLADAERVLGAARATGAANVVTYTALIDGYCRSGRLDDALRLIASMPVAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSMVCKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTMSCKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTFKYANHLLMPNRAG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0016540 | OsNaBo_02g0016540.02 | Chr02 | 17416291 | 17419196 | - | NAM | ||
| CDS seq | atggccatcacctcctcctcctcctcgccgcccgccgcccaccaccccttctctttccctcgccgcgccaagcaacacgggcgcccccgcctcgccgccgcctcctccaggtgggcgaaccgcagggccagctcctccatatgggtcaacccggccgcgccgccccgccccggccagacgctgcgccgcctcgtccagctcggggacctcgacgccgcgctccgcctcctcctcctccccggcgcgctgcccgcccccgccgccgccctcatctcctgcaacatactcatcaagaagctctgcgccacccgccgcctcgccgacgcggagcgcgtgctcgacgcgctcaaggcggccgccgccgcggacgccgtctcgcacaacaccctcgtcgcgggctactgccgcgacggccgcctcgccgacgcggagcgcgtgctcggcgcggccagggcgaccggcgcggccaacgtcgtcacctacaccgcgctcatcgacgggtactgccgctccggccgcctcgacgacgcgctccgcctcatcgcctccatgcccgtggcgcccgacacctacacctacaacaccgtgctcaagggcttgtgcatcgccaagaagtgggaggaggccgaggagctcatggcagagatgatcaggaaccgttgccctcccaacgaggtgacattcgccacgcagatccgttctttctgccagaacgggttgctcgaccgcgccgtccaactgctcgaccaaatgcctaggtatggatgcactcctgacgttgtcatttacagcacccttatcaatggattctcagagcaagggcatgtcgaccaagccctcgaccttctcaacactatgctatgcaagcccaacaccgtttgctacaatgctgcgttgaagggtttatgcatcgccgagcgatgggaggatatcggtgagctgatggctgagatggttaggaagggttgctcgccaaacgaagctacattcagcatgctgatcagttccttgtgccaaaataatttagtggacagcgcagtcgaagttcttgagcaaatggagaagtacgggtgtgagcctgacaccgtcaattacaatataatcatcaattccttgtctgaacgagggcgcgtggatgatgccctcaggttgctgaacagcatggtgtgtaagcctgatgcccttggttttaatgctgtgttgaagggcttttgtagagctgaacgatggcatgatgctagtgagcttattgctcagatgtttagggatgattgccctctaattgaaatgacctttaatatactgattgacacgctttgccaaaatggtctggtcaactatgcaacccaagtgtttgagcaaatgccaaggtacagatgtacgcctgacattgtcacatacagcagtcttcttaatggcttttctgaacaaggtcttgtagaggttgccattcagttatttagaagcatgccgtgcaagcctgatatctttagctacaatgctgtgttgaagggtttgtgcagagctgcacgatgggaagatgctggggagcttatagctgagatggttggaaaggattgtcccccaaatgaagtaacgttcaatatattaatcaattccttgtgccaaaaagggctggttgatcgtgcaattgaggttcttgagcaaatgccaaactatggaagtacacctgatatttttacatataacgcccttatcaatggcttttctgaacaaggccgtttggacgatgccctcaagttattgagcaccatgtcatgtaagcctgatgctatttcttataactctacattgaagggtttgtgtagagctgagcggtggcaggatgcagaggagcttgtagctgagatgcttaggaataagtgcactccaaatgaagtaacattcaagtatgctaatcatttacttatgcctaacagggctggttga
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| Protein seq | MAITSSSSSPPAAHHPFSFPRRAKQHGRPRLAAASSRWANRRASSSIWVNPAAPPRPGQTLRRLVQLGDLDAALRLLLLPGALPAPAAALISCNILIKKLCATRRLADAERVLDALKAAAAADAVSHNTLVAGYCRDGRLADAERVLGAARATGAANVVTYTALIDGYCRSGRLDDALRLIASMPVAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSMVCKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTMSCKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTFKYANHLLMPNRAG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.442466 | 0.000000 | 1.875720 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0470000 | RBH | 1.789819 | 1.541013 | 1.203457 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g27070 | RBH | 1.237403 | 1.164744 | 0.403436 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0470000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0016670 | RBH | 0.855444 | 4.775733 | 1.922789 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0016790 | RBH | 0.170548 | 0.000000 | 0.622693 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0016680 | RBH | 1.369899 | 0.739701 | 2.086904 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0016560 | RBH | 0.170675 | 0.039168 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0016480 | RBH | 4.289032 | 0.0 | 6.488090 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0266800 | RBH | 4.643378 | 3.530575 | 0.6375225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0016240 | RBH | 0.518569 | 0.160331 | 0.513170 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0287600 | RBH | 5.3348105 | 3.8913525 | 3.041928 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0016790 | RBH | 0.255399 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0016340 | RBH | 0.238493 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0016870 | RBH | 14.063884 | 4.519767 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0016660 | RBH | 1.101206 | 0.076910 | 0.633193 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0016410 | RBH | 0.476081 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G016840 | RBH | 0.485936 | 0.000000 | 0.702869 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
