Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0045470 | OGI:01121260 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:41642557-41645307 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgctacgccggactccccgactgctcgccgccgtgaaccccgccaccgcggttcgctccacagccgcgctcgtccagatcgcctCccctctcgaccccttcctcctCCAccacctcacagctcgctttcaccatgcaccggcggatgcccaccacctgctcgacgaaacgccgcgcagagccagctccatcgtgcgcgcgctcggcgcatgcaggggcgcgtcacgcgaggaagcggacggcgtcgcggccctccactgcgcggctctcaagtccgcggccgtgctggatccgccagtgcgcacgtccgtcatcacggcctactcccgggtgcgtgacgtgtgctccgctctgcaggtgttcgacgaggccgctgcaccggacttgatcctgtggaatgccgcgatcagtgctttgacgttgaactgccgttatggcgatgctgtggtccttttccggtggatggtggacgtgcttggtgtgtttgattcgacgtcgatggtcattatgctgtcgggggcgtcccgtgcaaggagcttggagcatgggattgcctttcatggaatggcactgaagagacgcctagacaccgatctgagcctttggaatactctcatggacatgtatgcaaagtgtggggatttttactcttcggaggttgtgtttcagaggatgccatatagggacactacatcatggaattctatggtaagtggaagcttatttaatggacttgctgagatttcagcatattacttcaaggaaatggtccgttccagttttcaggcagatgaggtgagcctgtcttgtgtcctttcagcttgctctcatctcaaggacctgttctcctttggggagtctgtccatagctctgtgatcaaactcggttacgaagacactaccagttcggtggaaaattccctgataacattctattatgagcttgggtttccagaggctgcagaggaggtatttctaagcacttccaacaaaaatttggtaacatggaatgctatgatcaaggggctggtagagaatgatagagttaatgaagccatgtgtatgttccaagaaatgagatcaaagaaccagccagatgttgccactttagtgactataatttcagcttgtggtgatcgtggcctacttcctgaagggaaagaagtccatggatacataataaaaaaaggacatatttacgaggagtgttctgtaggaaatagcttacttgatttgtatatgaaatgcaatgacccatctacagcacgcattttgttcaggacaatgccaatgagagacctgatctcatggaacacaatgatttctggttactcaagaaacgattcacttggagaagaggctaaagctatgttcaaaggactactatctgaaggcctaagctgcaccttgagcactgtggtagctgttataccttcatgTttttgtccacaagaccttaactttggcaagtctgttcactctttcatcctgaagtatgggtttctgactggagtttcagctgctaactctctgatacacatgtatatatgctgtggtgactctctggccgccttttcactgctggaaagcataactcccatgtcagatattatttcatggaatacagcaattgtgggctgtgtacaaaatggactctacggaaatgcgttagaagcctttcagtttatgcattcaacgttaacactaaatcctgatagcattacattagtcagtgttttatcagtatgtggaaacctgaaactgcagtcccttgggaagtccatccactgcatggcgctaaagcgcttgattgaattcaatttaagggtaaagaatgccctgcttaccatgtacttccgatttggagatactgaaagtgctgagttaattttctctagtctcgttggtagaaatctgtgctcctggaattgcatgatctctggttttgcacagaataacgaaggcttgagggcattgcagttctacaagaagatggagtattttgaacccaatgaaatatctattgtcggcattatctgtgcttgcactcaacttggggatcttaggcaaggaaagaacattcatgggcatgtggtcaggtttggtctgcaaactaacgtttttatttcagcatcacttgttgatatgtatagtaagtgcggaagactggacatttcgatcagagtatttgaatctTCtgctgaaaaatcgattgcttgctggaattccatgatatcagcttttggattccatgggcttgggttgaaatcgattgaaattttctggaagatgaataattctggagtgaaagctacaagaagtacTTttattgctctgttgtcagcttgcagtcactctggacttactgatgaaggattgaagtactaccatcttatgatagaacattttgggattatcccaaccccagaacaccatgtctgtgttgtagacatgcttgggcgtgctggtcggctgcaggaagcacataagtttgtggagagtttaccatcgaaacaagcacatggagtctggggtgcgctgttaagtgcttgcagcaagaaatctgaactgaagatgtgtgaatccgttgccaagcatttgctctgtctggagcctgaaaatagtggatattatgtgaccatgtctaacctgtacgcgtatcaagacatgtggagtggcgcagtgcaagtcagggacattttgcaagataaaggattgatgaagccccgtggccgcagcatcatcggttaa
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| CDS seq | atgctacgccggactccccgactgctcgccgccgtgaaccccgccaccgcggttcgctccacagccgcgctcgtccagatcgcctCccctctcgaccccttcctcctCCAccacctcacagctcgctttcaccatgcaccggcggatgcccaccacctgctcgacgaaacgccgcgcagagccagctccatcgtgcgcgcgctcggcgcatgcaggggcgcgtcacgcgaggaagcggacggcgtcgcggccctccactgcgcggctctcaagtccgcggccgtgctggatccgccagtgcgcacgtccgtcatcacggcctactcccgggtgcgtgacgtgtgctccgctctgcaggtgttcgacgaggccgctgcaccggacttgatcctgtggaatgccgcgatcagtgctttgacgttgaactgccgttatggcgatgctgtggtccttttccggtggatggtggacgtgcttggtgtgtttgattcgacgtcgatggtcattatgctgtcgggggcgtcccgtgcaaggagcttggagcatgggattgcctttcatggaatggcactgaagagacgcctagacaccgatctgagcctttggaatactctcatggacatgtatgcaaagtgtggggatttttactcttcggaggttgtgtttcagaggatgccatatagggacactacatcatggaattctatggtaagtggaagcttatttaatggacttgctgagatttcagcatattacttcaaggaaatggtccgttccagttttcaggcagatgaggtgagcctgtcttgtgtcctttcagcttgctctcatctcaaggacctgttctcctttggggagtctgtccatagctctgtgatcaaactcggttacgaagacactaccagttcggtggaaaattccctgataacattctattatgagcttgggtttccagaggctgcagaggaggtatttctaagcacttccaacaaaaatttggtaacatggaatgctatgatcaaggggctggtagagaatgatagagttaatgaagccatgtgtatgttccaagaaatgagatcaaagaaccagccagatgttgccactttagtgactataatttcagcttgtggtgatcgtggcctacttcctgaagggaaagaagtccatggatacataataaaaaaaggacatatttacgaggagtgttctgtaggaaatagcttacttgatttgtatatgaaatgcaatgacccatctacagcacgcattttgttcaggacaatgccaatgagagacctgatctcatggaacacaatgatttctggttactcaagaaacgattcacttggagaagaggctaaagctatgttcaaaggactactatctgaaggcctaagctgcaccttgagcactgtggtagctgttataccttcatgTttttgtccacaagaccttaactttggcaagtctgttcactctttcatcctgaagtatgggtttctgactggagtttcagctgctaactctctgatacacatgtatatatgctgtggtgactctctggccgccttttcactgctggaaagcataactcccatgtcagatattatttcatggaatacagcaattgtgggctgtgtacaaaatggactctacggaaatgcgttagaagcctttcagtttatgcattcaacgttaacactaaatcctgatagcattacattagtcagtgttttatcagtatgtggaaacctgaaactgcagtcccttgggaagtccatccactgcatggcgctaaagcgcttgattgaattcaatttaagggtaaagaatgccctgcttaccatgtacttccgatttggagatactgaaagtgctgagttaattttctctagtctcgttggtagaaatctgtgctcctggaattgcatgatctctggttttgcacagaataacgaaggcttgagggcattgcagttctacaagaagatggagtattttgaacccaatgaaatatctattgtcggcattatctgtgcttgcactcaacttggggatcttaggcaaggaaagaacattcatgggcatgtggtcaggtttggtctgcaaactaacgtttttatttcagcatcacttgttgatatgtatagtaagtgcggaagactggacatttcgatcagagtatttgaatctTCtgctgaaaaatcgattgcttgctggaattccatgatatcagcttttggattccatgggcttgggttgaaatcgattgaaattttctggaagatgaataattctggagtgaaagctacaagaagtacTTttattgctctgttgtcagcttgcagtcactctggacttactgatgaaggattgaagtactaccatcttatgatagaacattttgggattatcccaaccccagaacaccatgtctgtgttgtagacatgcttgggcgtgctggtcggctgcaggaagcacataagtttgtggagagtttaccatcgaaacaagcacatggagtctggggtgcgctgttaagtgcttgcagcaagaaatctgaactgaagatgtgtgaatccgttgccaagcatttgctctgtctggagcctgaaaatagtggatattatgtgaccatgtctaacctgtacgcgtatcaagacatgtggagtggcgcagtgcaagtcagggacattttgcaagataaaggattgatgaagccccgtggccgcagcatcatcggttaa
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| Protein seq | MLRRTPRLLAAVNPATAVRSTAALVQIASPLDPFLLHHLTARFHHAPADAHHLLDETPRRASSIVRALGACRGASREEADGVAALHCAALKSAAVLDPPVRTSVITAYSRVRDVCSALQVFDEAAAPDLILWNAAISALTLNCRYGDAVVLFRWMVDVLGVFDSTSMVIMLSGASRARSLEHGIAFHGMALKRRLDTDLSLWNTLMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQADEVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVENSLITFYYELGFPEAAEEVFLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMRSKNQPDVATLVTIISACGDRGLLPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTARILFRTMPMRDLISWNTMISGYSRNDSLGEEAKAMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHMYICCGDSLAAFSLLESITPMSDIISWNTAIVGCVQNGLYGNALEAFQFMHSTLTLNPDSITLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALLTMYFRFGDTESAELIFSSLVGRNLCSWNCMISGFAQNNEGLRALQFYKKMEYFEPNEISIVGIICACTQLGDLRQGKNIHGHVVRFGLQTNVFISASLVDMYSKCGRLDISIRVFESSAEKSIACWNSMISAFGFHGLGLKSIEIFWKMNNSGVKATRSTFIALLSACSHSGLTDEGLKYYHLMIEHFGIIPTPEHHVCVVDMLGRAGRLQEAHKFVESLPSKQAHGVWGALLSACSKKSELKMCESVAKHLLCLEPENSGYYVTMSNLYAYQDMWSGAVQVRDILQDKGLMKPRGRSIIG |
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| Function | Pentatricopeptide repeat-containing protein At4g19220, mitochondrial [UniProtKB/Swiss-Prot:O49680] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0045470 | OsNaBo_01g0045470.01 | Chr01 | 41642557 | 41645307 | + | NAM | ||
| CDS seq | atgctacgccggactccccgactgctcgccgccgtgaaccccgccaccgcggttcgctccacagccgcgctcgtccagatcgcctCccctctcgaccccttcctcctCCAccacctcacagctcgctttcaccatgcaccggcggatgcccaccacctgctcgacgaaacgccgcgcagagccagctccatcgtgcgcgcgctcggcgcatgcaggggcgcgtcacgcgaggaagcggacggcgtcgcggccctccactgcgcggctctcaagtccgcggccgtgctggatccgccagtgcgcacgtccgtcatcacggcctactcccgggtgcgtgacgtgtgctccgctctgcaggtgttcgacgaggccgctgcaccggacttgatcctgtggaatgccgcgatcagtgctttgacgttgaactgccgttatggcgatgctgtggtccttttccggtggatggtggacgtgcttggtgtgtttgattcgacgtcgatggtcattatgctgtcgggggcgtcccgtgcaaggagcttggagcatgggattgcctttcatggaatggcactgaagagacgcctagacaccgatctgagcctttggaatactctcatggacatgtatgcaaagtgtggggatttttactcttcggaggttgtgtttcagaggatgccatatagggacactacatcatggaattctatggtaagtggaagcttatttaatggacttgctgagatttcagcatattacttcaaggaaatggtccgttccagttttcaggcagatgaggtgagcctgtcttgtgtcctttcagcttgctctcatctcaaggacctgttctcctttggggagtctgtccatagctctgtgatcaaactcggttacgaagacactaccagttcggtggaaaattccctgataacattctattatgagcttgggtttccagaggctgcagaggaggtatttctaagcacttccaacaaaaatttggtaacatggaatgctatgatcaaggggctggtagagaatgatagagttaatgaagccatgtgtatgttccaagaaatgagatcaaagaaccagccagatgttgccactttagtgactataatttcagcttgtggtgatcgtggcctacttcctgaagggaaagaagtccatggatacataataaaaaaaggacatatttacgaggagtgttctgtaggaaatagcttacttgatttgtatatgaaatgcaatgacccatctacagcacgcattttgttcaggacaatgccaatgagagacctgatctcatggaacacaatgatttctggttactcaagaaacgattcacttggagaagaggctaaagctatgttcaaaggactactatctgaaggcctaagctgcaccttgagcactgtggtagctgttataccttcatgTttttgtccacaagaccttaactttggcaagtctgttcactctttcatcctgaagtatgggtttctgactggagtttcagctgctaactctctgatacacatgtatatatgctgtggtgactctctggccgccttttcactgctggaaagcataactcccatgtcagatattatttcatggaatacagcaattgtgggctgtgtacaaaatggactctacggaaatgcgttagaagcctttcagtttatgcattcaacgttaacactaaatcctgatagcattacattagtcagtgttttatcagtatgtggaaacctgaaactgcagtcccttgggaagtccatccactgcatggcgctaaagcgcttgattgaattcaatttaagggtaaagaatgccctgcttaccatgtacttccgatttggagatactgaaagtgctgagttaattttctctagtctcgttggtagaaatctgtgctcctggaattgcatgatctctggttttgcacagaataacgaaggcttgagggcattgcagttctacaagaagatggagtattttgaacccaatgaaatatctattgtcggcattatctgtgcttgcactcaacttggggatcttaggcaaggaaagaacattcatgggcatgtggtcaggtttggtctgcaaactaacgtttttatttcagcatcacttgttgatatgtatagtaagtgcggaagactggacatttcgatcagagtatttgaatctTCtgctgaaaaatcgattgcttgctggaattccatgatatcagcttttggattccatgggcttgggttgaaatcgattgaaattttctggaagatgaataattctggagtgaaagctacaagaagtacTTttattgctctgttgtcagcttgcagtcactctggacttactgatgaaggattgaagtactaccatcttatgatagaacattttgggattatcccaaccccagaacaccatgtctgtgttgtagacatgcttgggcgtgctggtcggctgcaggaagcacataagtttgtggagagtttaccatcgaaacaagcacatggagtctggggtgcgctgttaagtgcttgcagcaagaaatctgaactgaagatgtgtgaatccgttgccaagcatttgctctgtctggagcctgaaaatagtggatattatgtgaccatgtctaacctgtacgcgtatcaagacatgtggagtggcgcagtgcaagtcagggacattttgcaagataaaggattgatgaagccccgtggccgcagcatcatcggttaa
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| Protein seq | MLRRTPRLLAAVNPATAVRSTAALVQIASPLDPFLLHHLTARFHHAPADAHHLLDETPRRASSIVRALGACRGASREEADGVAALHCAALKSAAVLDPPVRTSVITAYSRVRDVCSALQVFDEAAAPDLILWNAAISALTLNCRYGDAVVLFRWMVDVLGVFDSTSMVIMLSGASRARSLEHGIAFHGMALKRRLDTDLSLWNTLMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQADEVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVENSLITFYYELGFPEAAEEVFLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMRSKNQPDVATLVTIISACGDRGLLPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTARILFRTMPMRDLISWNTMISGYSRNDSLGEEAKAMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHMYICCGDSLAAFSLLESITPMSDIISWNTAIVGCVQNGLYGNALEAFQFMHSTLTLNPDSITLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALLTMYFRFGDTESAELIFSSLVGRNLCSWNCMISGFAQNNEGLRALQFYKKMEYFEPNEISIVGIICACTQLGDLRQGKNIHGHVVRFGLQTNVFISASLVDMYSKCGRLDISIRVFESSAEKSIACWNSMISAFGFHGLGLKSIEIFWKMNNSGVKATRSTFIALLSACSHSGLTDEGLKYYHLMIEHFGIIPTPEHHVCVVDMLGRAGRLQEAHKFVESLPSKQAHGVWGALLSACSKKSELKMCESVAKHLLCLEPENSGYYVTMSNLYAYQDMWSGAVQVRDILQDKGLMKPRGRSIIG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 4.310854 | 0.285319 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0839400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71180 | RBH | 0.415737 | 0.183235 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0839400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046420 | RBH | 0.103585 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0045930 | RBH | 0.093396 | 0.0 | 0.231562 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046320 | RBH | 0.0 | 0.0 | 1.248802 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0045880 | RBH | 0.0 | 0.021229 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045430 | RBH | 0.380528 | 1.255212 | 1.027589 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0678000 | RBH | 0.771244 | 1.6583085 | 0.3754935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0044970 | RBH | 0.035171 | 0.0 | 0.018098 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0680000 | RBH | 0.8985525 | 1.8825825 | 3.4929835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045450 | RBH | 0.060129 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045360 | RBH | 0.132607 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0045690 | RBH | 0.856316 | 2.295250 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045690 | RBH | 0.049254 | 0.243956 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045430 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G045750 | RBH | 0.113983 | 0.538495 | 0.128987 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0014360 | RBH | 0.0 | 0.000000 | 0.501865 |
