Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0839400 | OGI:01107590 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:36011627-36013033 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCGCCCACAATCTGCTCGACGAAATGCCGCACCGGGACGTCGTCTCGGCCACGGCGGCCATTGGCGCGCTCACCCGCAGCGGCCGGCACCGGGACGCGGTCGCCCTCTTCTCCGGCATTCTTGGGGACGGCATCGTGCCCAACGAGTTCACCTTCGGCACCATCCTGCAGTCGGCGAGCGCGCTGCGCGACCTTCGCGTCGGTGCGCAGCTCCACGCCTGCGTCGCCAAGCTTGGCCTCTGTTCCAACGTCTTCGTCGGCAGCGCTCTCGTCGACCACTACGCCAAGATGGGCTCCGTGAGGGAAGCCCAGGGCGCGCTGCAGGACACCCGCGAGCCGAACGTCGTCTCTTACACCGCGCTCATTGCGGGGTTTCTGAAGAATGGGATGTCTGGGGATGCAGCCCGGCTGTTCCGGTGCATGCCGGAGAGGAATGTGATTTCTTGGAACGCCATGATCGGCGGATCCAGCAAGGCAGGACTCAACGAGGAGGCAGTCAATCTGTTCCTGGAGATGTGTCGGGAAGGCGTCAGGCCGAACGAGAGCACGTTTCCCTGCTTGCTCACATCCGTTGCCAATGCAGGGGCGCTCGGCGTTGGCAGAAGCATCCATGCTTCTGCTATCAAGTTCTTGGGTAAGCTTGATGTTTTTGCGGGCAATTCTCTTGTCAGCTTCTATGCTAGATGTGGCAGTTTGGATGACAGCGTCCTGGCGTTCAAAAAGATCAAGAACAAGAACGTGGTGTCCTGGAACGCGTTGATCTGCGGATATGCGCAAAATGGGAGGGGGGAGGAGGCTTTGGATGCCTTCAGGAGGATGAAAGCTACAGGCTTGAAGCTGGATCGTGTTACTCTTCTTGGCTTGCTGTTTGGTTGCAACCATGCTGGTCTGGTTGATGAAGGTTACTCATTGTTCAGGACTGCCGAGATGGAGCAGCCGGGTGTATTGAGACCTGAGCACTATGCTTGTGTGGTTGATCTCTTCTCCAGGGCTAAGCGATTTGATGATGCCAAGCGGTTTCTTGAGAACCTTCCCTTCGAGCCAGGCATTGGATTCTGGAAGTCGTTGATAGGAGGGTGCCAGATTCACTGGAATAGGGAGCTGGCTAAGAGTGTCGCGAAGCATATTCATGCACTGGATCCTAAGGATACTTCTTCATACATCCTTCTATCTAATGTTTACTCTGCAGCAGGAAGCTGGCAGGATGTGTCAATGATCAGAAGGGAAATTAAAGAAAAGGGACTGAAGAGGATCACTGGTTGCAGTTGGATTGAGGTCCAGAACCAGGTTCATGTCTTCTTCAATGGAGACCGCAGACATCCAAAGAGTGATGATATTTACATGATGCTTGAATCTTGTCTGAATAGCGAGGAAGATGAGGACTGCCTTGTATGATTATCAGACACCA
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| CDS seq | ATGCCGCACCGGGACGTCGTCTCGGCCACGGCGGCCATTGGCGCGCTCACCCGCAGCGGCCGGCACCGGGACGCGGTCGCCCTCTTCTCCGGCATTCTTGGGGACGGCATCGTGCCCAACGAGTTCACCTTCGGCACCATCCTGCAGTCGGCGAGCGCGCTGCGCGACCTTCGCGTCGGTGCGCAGCTCCACGCCTGCGTCGCCAAGCTTGGCCTCTGTTCCAACGTCTTCGTCGGCAGCGCTCTCGTCGACCACTACGCCAAGATGGGCTCCGTGAGGGAAGCCCAGGGCGCGCTGCAGGACACCCGCGAGCCGAACGTCGTCTCTTACACCGCGCTCATTGCGGGGTTTCTGAAGAATGGGATGTCTGGGGATGCAGCCCGGCTGTTCCGGTGCATGCCGGAGAGGAATGTGATTTCTTGGAACGCCATGATCGGCGGATCCAGCAAGGCAGGACTCAACGAGGAGGCAGTCAATCTGTTCCTGGAGATGTGTCGGGAAGGCGTCAGGCCGAACGAGAGCACGTTTCCCTGCTTGCTCACATCCGTTGCCAATGCAGGGGCGCTCGGCGTTGGCAGAAGCATCCATGCTTCTGCTATCAAGTTCTTGGGTAAGCTTGATGTTTTTGCGGGCAATTCTCTTGTCAGCTTCTATGCTAGATGTGGCAGTTTGGATGACAGCGTCCTGGCGTTCAAAAAGATCAAGAACAAGAACGTGGTGTCCTGGAACGCGTTGATCTGCGGATATGCGCAAAATGGGAGGGGGGAGGAGGCTTTGGATGCCTTCAGGAGGATGAAAGCTACAGGCTTGAAGCTGGATCGTGTTACTCTTCTTGGCTTGCTGTTTGGTTGCAACCATGCTGGTCTGGTTGATGAAGGTTACTCATTGTTCAGGACTGCCGAGATGGAGCAGCCGGGTGTATTGAGACCTGAGCACTATGCTTGTGTGGTTGATCTCTTCTCCAGGGCTAAGCGATTTGATGATGCCAAGCGGTTTCTTGAGAACCTTCCCTTCGAGCCAGGCATTGGATTCTGGAAGTCGTTGATAGGAGGGTGCCAGATTCACTGGAATAGGGAGCTGGCTAAGAGTGTCGCGAAGCATATTCATGCACTGGATCCTAAGGATACTTCTTCATACATCCTTCTATCTAATGTTTACTCTGCAGCAGGAAGCTGGCAGGATGTGTCAATGATCAGAAGGGAAATTAAAGAAAAGGGACTGAAGAGGATCACTGGTTGCAGTTGGATTGAGGTCCAGAACCAGGTTCATGTCTTCTTCAATGGAGACCGCAGACATCCAAAGAGTGATGATATTTACATGATGCTTGAATCTTGTCTGAATAGCGAGGAAGATGAGGACTGCCTTGTATGA
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| Protein seq | MPHRDVVSATAAIGALTRSGRHRDAVALFSGILGDGIVPNEFTFGTILQSASALRDLRVGAQLHACVAKLGLCSNVFVGSALVDHYAKMGSVREAQGALQDTREPNVVSYTALIAGFLKNGMSGDAARLFRCMPERNVISWNAMIGGSSKAGLNEEAVNLFLEMCREGVRPNESTFPCLLTSVANAGALGVGRSIHASAIKFLGKLDVFAGNSLVSFYARCGSLDDSVLAFKKIKNKNVVSWNALICGYAQNGRGEEALDAFRRMKATGLKLDRVTLLGLLFGCNHAGLVDEGYSLFRTAEMEQPGVLRPEHYACVVDLFSRAKRFDDAKRFLENLPFEPGIGFWKSLIGGCQIHWNRELAKSVAKHIHALDPKDTSSYILLSNVYSAAGSWQDVSMIRREIKEKGLKRITGCSWIEVQNQVHVFFNGDRRHPKSDDIYMMLESCLNSEEDEDCLV |
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| Function | Pentatricopeptide repeat-containing protein At5g42450, mitochondrial [UniProtKB/Swiss-Prot:Q9FIH2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0839400 | OsNip_01t0839400-00 | Chr01 | 36011627 | 36013033 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCGCACCGGGACGTCGTCTCGGCCACGGCGGCCATTGGCGCGCTCACCCGCAGCGGCCGGCACCGGGACGCGGTCGCCCTCTTCTCCGGCATTCTTGGGGACGGCATCGTGCCCAACGAGTTCACCTTCGGCACCATCCTGCAGTCGGCGAGCGCGCTGCGCGACCTTCGCGTCGGTGCGCAGCTCCACGCCTGCGTCGCCAAGCTTGGCCTCTGTTCCAACGTCTTCGTCGGCAGCGCTCTCGTCGACCACTACGCCAAGATGGGCTCCGTGAGGGAAGCCCAGGGCGCGCTGCAGGACACCCGCGAGCCGAACGTCGTCTCTTACACCGCGCTCATTGCGGGGTTTCTGAAGAATGGGATGTCTGGGGATGCAGCCCGGCTGTTCCGGTGCATGCCGGAGAGGAATGTGATTTCTTGGAACGCCATGATCGGCGGATCCAGCAAGGCAGGACTCAACGAGGAGGCAGTCAATCTGTTCCTGGAGATGTGTCGGGAAGGCGTCAGGCCGAACGAGAGCACGTTTCCCTGCTTGCTCACATCCGTTGCCAATGCAGGGGCGCTCGGCGTTGGCAGAAGCATCCATGCTTCTGCTATCAAGTTCTTGGGTAAGCTTGATGTTTTTGCGGGCAATTCTCTTGTCAGCTTCTATGCTAGATGTGGCAGTTTGGATGACAGCGTCCTGGCGTTCAAAAAGATCAAGAACAAGAACGTGGTGTCCTGGAACGCGTTGATCTGCGGATATGCGCAAAATGGGAGGGGGGAGGAGGCTTTGGATGCCTTCAGGAGGATGAAAGCTACAGGCTTGAAGCTGGATCGTGTTACTCTTCTTGGCTTGCTGTTTGGTTGCAACCATGCTGGTCTGGTTGATGAAGGTTACTCATTGTTCAGGACTGCCGAGATGGAGCAGCCGGGTGTATTGAGACCTGAGCACTATGCTTGTGTGGTTGATCTCTTCTCCAGGGCTAAGCGATTTGATGATGCCAAGCGGTTTCTTGAGAACCTTCCCTTCGAGCCAGGCATTGGATTCTGGAAGTCGTTGATAGGAGGGTGCCAGATTCACTGGAATAGGGAGCTGGCTAAGAGTGTCGCGAAGCATATTCATGCACTGGATCCTAAGGATACTTCTTCATACATCCTTCTATCTAATGTTTACTCTGCAGCAGGAAGCTGGCAGGATGTGTCAATGATCAGAAGGGAAATTAAAGAAAAGGGACTGAAGAGGATCACTGGTTGCAGTTGGATTGAGGTCCAGAACCAGGTTCATGTCTTCTTCAATGGAGACCGCAGACATCCAAAGAGTGATGATATTTACATGATGCTTGAATCTTGTCTGAATAGCGAGGAAGATGAGGACTGCCTTGTATGA
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| Protein seq | MPHRDVVSATAAIGALTRSGRHRDAVALFSGILGDGIVPNEFTFGTILQSASALRDLRVGAQLHACVAKLGLCSNVFVGSALVDHYAKMGSVREAQGALQDTREPNVVSYTALIAGFLKNGMSGDAARLFRCMPERNVISWNAMIGGSSKAGLNEEAVNLFLEMCREGVRPNESTFPCLLTSVANAGALGVGRSIHASAIKFLGKLDVFAGNSLVSFYARCGSLDDSVLAFKKIKNKNVVSWNALICGYAQNGRGEEALDAFRRMKATGLKLDRVTLLGLLFGCNHAGLVDEGYSLFRTAEMEQPGVLRPEHYACVVDLFSRAKRFDDAKRFLENLPFEPGIGFWKSLIGGCQIHWNRELAKSVAKHIHALDPKDTSSYILLSNVYSAAGSWQDVSMIRREIKEKGLKRITGCSWIEVQNQVHVFFNGDRRHPKSDDIYMMLESCLNSEEDEDCLV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0455900 | RBH | 0.115108 | 0.088534 | 0.281338 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g62220 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0839400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0039690 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0039160 | RBH | 0.0 | 0.0 | 0.657282 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0039580 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039040 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0038620 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0595600 | RBH | 0.1911865 | 0.2059415 | 0.182068 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0038300 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0592700 | RBH | 0.2610915 | 0.1652275 | 1.778708 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0038640 | RBH | 0.060426 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0038600 | RBH | 0.078415 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0038820 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0038840 | RBH | 0.134446 | 0.087064 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0038660 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G039170 | RBH | 0.0 | 0.0 | 0.258820 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0038860 | RBH | 1.088424 | 25.327080 | 19.153482 |
