Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0042790 | OGI:01033530 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:39562830-39565036 | ||||||||
| Gene Symbol | PLT5, OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1 | ||||||||||
| DNA seq | ttaattaccttgggggatgttgaagcagacgtcgccggcggaggagtcgccggcggtggtggtggtggcggcggcggagatgagagtggagttggcctgagacggcgggagctgatcctgcggggagagggagaaggccagccagttgttcatggtggccatggttgatgattcacactgaacaagacaagattcaatgcgaattaagctatggttatatgtatgatttgctacttggttaagctctgttagatcaagtcgccattgttgtggtgagctcaaggttaggggaagcttaagctaagctaactgagaagaagaagaggtcaagagaggtttggagcactaagcaacagtatcactggtagatatttatataagatagatatgcatgctgctaattgctaagttagtagtactactactaatggaagtactcccttatgtaggagaaggcagcaaggaggtctagcttttgtgcacttttgtttttaaaaaaaaaATgaatttgtaacctgtgtgtgcatgcaatacaaaaacattgggcatggtttaactgaacagaaaccactttctgcttctgctttctggggggtgagtccaccatattttgtctcattttcctgtgaatatttaagcccgtctatatgcatgaaacctacatgatctcaatactactagtagtatactacTACAAaacagtgtatgcagtagctttgtatatAaagcaatggccttgggctcgataatagtataaaatatcatcttcttttttcactgccctttgactgaaaagttggtagtagtagtaAGagagggataaataatataatcaaggttgcaaaaaagaaatgagagcaagatctaagagtcattctatttgtccaggatctcAattcatgagcagatgttcctgtatctctctctttttcaaatgcaggaatgcacatgcaaactgcacggttgggttttccttggccatacatgcatgcagttgacatatgcgtgtatatgcatccaaactatatagtgccaaaacaaagttctgcaagactggtgaatttatataattaatcagcatatatgaatagagtgaagataggcttggtttggcctggacctgatctcctcaaaccctaaaaccactcacacagctcaatcacctgcagaagctgaatccctgacaaggttgTttacatgccccaaggcacacctctccttcctccctctgacacagacacacatttagagcaagtactataataaggccctagatagctctttggttaaTttgctctggaaacatagagagatcaaagagaggaatcgtacttgtttttttttaacggagcgcaaaagactcgccggatatattagaaggaataaaattcaaaaacataaccttctctaaaaaaagaagaggataagaaaaaacaacaacagcatgaaggggtgtatttggttgtcagccacacattaccacaactaagattatgcacgttgcagcagtcacaaaagtgtggtagctagacaaattactagtcacaaagtgtgataaagttgataagaaaatatttgagctatggtatatggacattctattgaactaaacacatggctaacaaattgtgacaactaaaagtgtggtgtggcaaaatacagtcgtgaatcaaacacccccgtagtatgtgttccttgttgctttattaagtataatacaagagtttccacaaggttataatccaaacgatcatatgtatacacgtctttcaacatcagaatttaggatctgtttttactgaatatcaagaagagtagatttaaatggagagaaaaaaaagactcataaacgtcttgttttttttcctactactatagtatatgccatgatgctgcctgcccaccacagccattttcagttgaccattagaaatgtaatctgagaatatatcatgcagtgtacgtaaagcaaacaataacatcatagaagatcattttgctggagAaaatatacggaactcttttggtttgaaacaccaaagaagatcaaggacaggcaagcagaaaacctgaaaacaaattaaaacggctagtagctgctagtatagctctgtcaaatattcatgtattcatatacggaattgcagtagaggatgatgtgctacctgcaccctagaagaggacacgaacccttgtcttccggccat
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| CDS seq | atggccggaagacaagggttcgtgtcctcttctagggtgcagtgtgaatcatcaaccatggccaccatgaacaactggctggccttctccctctccccgcaggatcagctcccgccgtctcaggccaactccactctcatctccgccgccgccaccaccaccaccgccggcgactcctccgccggcgacgtctgcttcaacatcccccaaggtaattaa |
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| Protein seq | MAGRQGFVSSSRVQCESSTMATMNNWLAFSLSPQDQLPPSQANSTLISAAATTTTAGDSSAGDVCFNIPQGN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0042790 | OsNaBo_01g0042790.01 | Chr01 | 39562830 | 39565036 | - | NAM | ||
| CDS seq | atggccggaagacaagggttcgtgtcctcttctagggtgcagtgtgaatcatcaaccatggccaccatgaacaactggctggccttctccctctccccgcaggatcagctcccgccgtctcaggccaactccactctcatctccgccgccgccaccaccaccaccgccggcgactcctccgccggcgacgtctgcttcaacatcccccaaggtaattaa
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| Protein seq | MAGRQGFVSSSRVQCESSTMATMNNWLAFSLSPQDQLPPSQANSTLISAAATTTTAGDSSAGDVCFNIPQGN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0899800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g67410 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0899800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043690 | SBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0043280 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0043640 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0043070 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042680 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0645100 | SBH | 0.0266105 | 1.694068 | 0.00879 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0042320 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0645700 | SBH | 0.0410175 | 0.41309 | 0.00646 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0042650 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0042890 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0042880 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042670 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G043070 | RBH | 0.0 | 1.552001 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
