Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsCMeo_01g0043640 | OGI:01033530 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:40183512-40185727 | ||||||||
Gene Symbol | PLT5, OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1 | ||||||||||
DNA seq | ttaattaccttgggggatgttgaagcagacgtcgccggtggaggagtcgccggcggtggtggtggtggcggcggcggagatgagagtggagttggtctgagacggcgggagctgatcctgcggggagagggagaaggccagccagttgttcatggtggccatggttgatgattcacactgaacaagacaagattcaatgcgaattaagctatggttatatgtatgatttgctacttggttaagctctgttagatcaagtcgccattgttgtggtgagctcaaggttaggggaagcttaagctaagctaactgagaagaagaagaagaggtcaagagaggtttggagcactaagcaacagtatcactggtagatatttatataagatagatatgcatgatgctaattgctaagttagtagtactactactaatggaagtactcccttatgtaggagaaggcagcaaggaggtctagcttttgtgcacttttgtttttttttaaaaaaaatatgaatttgtaacctgtgtgtgcatgcaatacaaaaacattgggcatggtttaactgaacagaaaccactttctgcttctgctttctggggggtgagtccaccatattttgtctcattttcctgtgaatatttaagcctgtctatatgcatgaaacctacatgatctcaatactactagtagtatactactacaatacagtgtatgcagtagctttgtatataaagcaatggccttgggctcgataatagtataaaatatcatcttcttttttcactgccctttgactgaaaagttggtagtagtagtaagagagggataaataatataatcaaggttgcaaaaaagaaatgagagcaagatctaagagtcattctatttgtccaggatctcaattcatgggcagatgttcctgtatctctctctttttcaaatgcaggaatgcacatgcaaactgcacggttgggttttccttggccatacatgcatgcagttgacatatgcgtgtatatgcatccaaactatatagtgccaaaacaaagttcttcaagactggtgaatttatataattaatcagcatatatgaatagagtgaagataggcttggtttggcctggacctgatctcctcaaaccctaaaaccactcacacagctcaatcacctgcagaagctgaatccctgacaaggttgtttacatgccccaaggcacacctctccttcctccctctgacacagacacacatttagagcaagtactataataaggccctagatagctctttggttaatttgctctggaaacatagagagatcaaagagaggaatcgtacttatttttttttaacggagcgcaaaagactcgccggatatattagaaggaataaaattcaaaaacataaccttctctaaaaaaagaagaggataagaaaaaacaacagcagcatgaaggggtgtatttggttgtcagccacacattaccacaactaagattatgcacgttgcagcagtcacaaaagtgtggtagctagacaaattactagtcacaaagtgtgataaagttgataagaaaatatttgagctatggtatatggacattctattgaactaaacacatggctaacaaattgtgacaactaaaagtgtggtgtggcaaaatacagtcgtgaatcaaacacccccatagtatgtgttccttgttgctttattaagtataatacaagagtttccacaaggttataatccaaacgatcatatgtatacacgtctttcaacatcagaatttaggatctgtttttactgaatatcaagaagagtagatttaaatggagagaaaaaaaagactcataaacgtcttgtattttttttcctactactatagtatatgccatgatgctgcctgcccaccacagccattttcagttgaccattagaaatgtaatctgagaatatatcatgcagtgtacgtaaagcaaacaataacatcatagaagatcattttgctggagaaaatatacggaactcttttggtttgaaacaccaaagaagatcaaggacaggcaagcagaaaacctgaaaacaaattaaaacggctagtagctgctagtatagctctgtcaaatattcatgtattcatatacggaattgcagtagaggatgatgtgctacctgcaccctagaagaggacacgaacccttgtcttccggccat
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CDS seq | atggccggaagacaagggttcgtgtcctcttctagggtgcagtgtgaatcatcaaccatggccaccatgaacaactggctggccttctccctctccccgcaggatcagctcccgccgtctcagaccaactccactctcatctccgccgccgccaccaccaccaccgccggcgactcctccaccggcgacgtctgcttcaacatcccccaaggtaattaa |
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Protein seq | MAGRQGFVSSSRVQCESSTMATMNNWLAFSLSPQDQLPPSQTNSTLISAAATTTTAGDSSTGDVCFNIPQGN |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsCMeo_01g0043640 | OsCMeo_01g0043640.01 | Chr01 | 40183512 | 40185727 | - | NAM | ||
CDS seq | atggccggaagacaagggttcgtgtcctcttctagggtgcagtgtgaatcatcaaccatggccaccatgaacaactggctggccttctccctctccccgcaggatcagctcccgccgtctcagaccaactccactctcatctccgccgccgccaccaccaccaccgccggcgactcctccaccggcgacgtctgcttcaacatcccccaaggtaattaa
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Protein seq | MAGRQGFVSSSRVQCESSTMATMNNWLAFSLSPQDQLPPSQTNSTLISAAATTTTAGDSSTGDVCFNIPQGN |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0899800 | SBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g67410 | SBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os01g0899800 | SBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043690 | SBH | 0.0 | 0.000000 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0043280 | RBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0043070 | RBH | 0.0 | 0.000000 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042680 | RBH | 0.0 | 0.000000 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0645100 | SBH | 0.0266105 | 1.694068 | 0.00879 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0042320 | RBH | 0.0 | 0.000000 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0645700 | SBH | 0.0410175 | 0.41309 | 0.00646 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0042650 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042590 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0042890 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0042880 | RBH | 0.0 | 0.000000 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042670 | RBH | 0.0 | 0.000000 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G043070 | RBH | 0.0 | 1.552001 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0042790 | RBH | 0.0 | 0.000000 | 0.000000 |