Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0035590 | OGI:01100520 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:34018496-34020580 | ||||||||
| Gene Symbol | RLCK45, OsRLCK45 | ||||||||||
| DNA seq | cccccgcggatcggctcgagggtgtttccccactctcgcgtcgattcgcgcgatggacctgttgacatcggcgatgaagagatgctgcaacggcaagacgctcctccgcggcgcccgcacctgtcgctgctcgtccgccagcgccattggatcttccggtgtccgtggcaaggaggaagcatcgacttcggcgacggactccgagccggataagaagaggtggaggaagaagaggttctggaggaagaagaagaagaaggccaagaaggatcactacggcgacgccgccgccaccgagcacggcagcgagcgcgccagctgcaggcgctacgagaacgacgccgtggccgacctcgtgaacgacatatcgtccaagtcaggtaaacaaacatatatgcaagcaaaatatgcatagagagaaccgatgcttcgtccctcgatatgatcacgctgatcatgcacgagctgttgtgcacgcatggctgcagatgtctgcaacgtgtacgcagccgaggggattctacggatcacccatcagaacatccccagcatggtgctcacgtacaggcagctatgcaacgccaccgactccttcagcccgaacaacctgctcggggaaggcggctttgggagggtgtacagaggccacctcgaagagatcaacgaggtaaggcaccgatcaatatgccacatgtcatgtactcatgtccatgcctgcgctgtaacgcacgcatATGCatgaacaagcagatcgtcgccgtcaAGCagctggacaaggacgggttccaggggaaccgcgagttcctggtggaggtgctgatgctcagtctcctgcaccaccccaacctcgtcaagctgctcggctactgcaccgacatggaccagagaatcctcgtctacgagtgcatgcgaaacggctcgctggaggatcatctcctaggtacgtacgggcggcacagccagcgttggatcgccatgtcgtcgatcaatccgctgatcgatcgagcgtgcgtgcgtgcagatctccctccaaaggcaaagcctctcccgtggcaaacgcggatgaagatcgcggtgggcgcggcgaagggcatcgagtacctgcacgaggtggccaacccgccggtgatctaccgcgacctcaagacgtccaacatcctcctggacgaggacttcaactccaagctgtccgacttcggcctcgccaagctcggccccgtcggcgacaagagccacgtcagcacgcgggtcatgggcacgtacggctactgcgcccccgagtacgccatgaccggcaagctcaccaagacgtcggacatctacagcttcggcgtcgtgctgctggagatcatcaccggcaggcgggcgatcgacacctccaggccgacgcacgagcaggttctcgtccAatgggtgagcaactcacggccctcgtcctacaaaaattaaccgatttcgagctgcattaattaactggcttctctgtgtgtgcaaacacaggcggcacctctcgtcaaggacaagaagagattcgtgagactggctgacccgttgctggaagagaaattccccctcaaggggctttaccaagctctcgcgatcgcctccatgtgcttgcaggaggatgccagcaacaggccgatgatcagcgacgtcgtcgcggcgctctcgtttcttgccgagcagaagtatcatccccaagatggcccggatcaggccgcccggaagagcagagacagggactgtagcaatcctcccaggaagacagacatggtttctgagatcaaggcagatgatgaaatcaagcacaggtgaccatagaggagtaacagcctagcaGggaagggaggagctgcaggactgtctgctctcttgaatttcttgtgtaatgtacaccacctaggcaggatgtaacagcaacaagtcgatcttgactggtacttggtctgttcgtcaggattcattaccagattattggagctcgcaggactgtctgctctcttgcagtcccaagttattggagctaactatagatacgatgagaatgacaagaatgatgacattaccataagccagttatatcga
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| CDS seq | atggacctgttgacatcggcgatgaagagatgctgcaacggcaagacgctcctccgcggcgcccgcacctgtcgctgctcgtccgccagcgccattggatcttccggtgtccgtggcaaggaggaagcatcgacttcggcgacggactccgagccggataagaagaggtggaggaagaagaggttctggaggaagaagaagaagaaggccaagaaggatcactacggcgacgccgccgccaccgagcacggcagcgagcgcgccagctgcaggcgctacgagaacgacgccgtggccgacctcgtgaacgacatatcgtccaagtcagatgtctgcaacgtgtacgcagccgaggggattctacggatcacccatcagaacatccccagcatggtgctcacgtacaggcagctatgcaacgccaccgactccttcagcccgaacaacctgctcggggaaggcggctttgggagggtgtacagaggccacctcgaagagatcaacgagatcgtcgccgtcaAGCagctggacaaggacgggttccaggggaaccgcgagttcctggtggaggtgctgatgctcagtctcctgcaccaccccaacctcgtcaagctgctcggctactgcaccgacatggaccagagaatcctcgtctacgagtgcatgcgaaacggctcgctggaggatcatctcctagatctccctccaaaggcaaagcctctcccgtggcaaacgcggatgaagatcgcggtgggcgcggcgaagggcatcgagtacctgcacgaggtggccaacccgccggtgatctaccgcgacctcaagacgtccaacatcctcctggacgaggacttcaactccaagctgtccgacttcggcctcgccaagctcggccccgtcggcgacaagagccacgtcagcacgcgggtcatgggcacgtacggctactgcgcccccgagtacgccatgaccggcaagctcaccaagacgtcggacatctacagcttcggcgtcgtgctgctggagatcatcaccggcaggcgggcgatcgacacctccaggccgacgcacgagcaggttctcgtccAatgggcggcacctctcgtcaaggacaagaagagattcgtgagactggctgacccgttgctggaagagaaattccccctcaaggggctttaccaagctctcgcgatcgcctccatgtgcttgcaggaggatgccagcaacaggccgatgatcagcgacgtcgtcgcggcgctctcgtttcttgccgagcagaagtatcatccccaagatggcccggatcaggccgcccggaagagcagagacagggactgtagcaatcctcccaggaagacagacatggtttctgagatcaaggcagatgatgaaatcaagcacaggtga
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| Protein seq | MDLLTSAMKRCCNGKTLLRGARTCRCSSASAIGSSGVRGKEEASTSATDSEPDKKRWRKKRFWRKKKKKAKKDHYGDAAATEHGSERASCRRYENDAVADLVNDISSKSDVCNVYAAEGILRITHQNIPSMVLTYRQLCNATDSFSPNNLLGEGGFGRVYRGHLEEINEIVAVKQLDKDGFQGNREFLVEVLMLSLLHHPNLVKLLGYCTDMDQRILVYECMRNGSLEDHLLDLPPKAKPLPWQTRMKIAVGAAKGIEYLHEVANPPVIYRDLKTSNILLDEDFNSKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGKLTKTSDIYSFGVVLLEIITGRRAIDTSRPTHEQVLVQWAAPLVKDKKRFVRLADPLLEEKFPLKGLYQALAIASMCLQEDASNRPMISDVVAALSFLAEQKYHPQDGPDQAARKSRDRDCSNPPRKTDMVSEIKADDEIKHR |
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| Function | Probable serine/threonine-protein kinase PBL23 [UniProtKB/Swiss-Prot:F4JEQ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0035590 | OsNaBo_01g0035590.01 | Chr01 | 34018496 | 34020580 | + | NAM | ||
| CDS seq | atggacctgttgacatcggcgatgaagagatgctgcaacggcaagacgctcctccgcggcgcccgcacctgtcgctgctcgtccgccagcgccattggatcttccggtgtccgtggcaaggaggaagcatcgacttcggcgacggactccgagccggataagaagaggtggaggaagaagaggttctggaggaagaagaagaagaaggccaagaaggatcactacggcgacgccgccgccaccgagcacggcagcgagcgcgccagctgcaggcgctacgagaacgacgccgtggccgacctcgtgaacgacatatcgtccaagtcagatgtctgcaacgtgtacgcagccgaggggattctacggatcacccatcagaacatccccagcatggtgctcacgtacaggcagctatgcaacgccaccgactccttcagcccgaacaacctgctcggggaaggcggctttgggagggtgtacagaggccacctcgaagagatcaacgagatcgtcgccgtcaAGCagctggacaaggacgggttccaggggaaccgcgagttcctggtggaggtgctgatgctcagtctcctgcaccaccccaacctcgtcaagctgctcggctactgcaccgacatggaccagagaatcctcgtctacgagtgcatgcgaaacggctcgctggaggatcatctcctagatctccctccaaaggcaaagcctctcccgtggcaaacgcggatgaagatcgcggtgggcgcggcgaagggcatcgagtacctgcacgaggtggccaacccgccggtgatctaccgcgacctcaagacgtccaacatcctcctggacgaggacttcaactccaagctgtccgacttcggcctcgccaagctcggccccgtcggcgacaagagccacgtcagcacgcgggtcatgggcacgtacggctactgcgcccccgagtacgccatgaccggcaagctcaccaagacgtcggacatctacagcttcggcgtcgtgctgctggagatcatcaccggcaggcgggcgatcgacacctccaggccgacgcacgagcaggttctcgtccAatgggcggcacctctcgtcaaggacaagaagagattcgtgagactggctgacccgttgctggaagagaaattccccctcaaggggctttaccaagctctcgcgatcgcctccatgtgcttgcaggaggatgccagcaacaggccgatgatcagcgacgtcgtcgcggcgctctcgtttcttgccgagcagaagtatcatccccaagatggcccggatcaggccgcccggaagagcagagacagggactgtagcaatcctcccaggaagacagacatggtttctgagatcaaggcagatgatgaaatcaagcacaggtga
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| Protein seq | MDLLTSAMKRCCNGKTLLRGARTCRCSSASAIGSSGVRGKEEASTSATDSEPDKKRWRKKRFWRKKKKKAKKDHYGDAAATEHGSERASCRRYENDAVADLVNDISSKSDVCNVYAAEGILRITHQNIPSMVLTYRQLCNATDSFSPNNLLGEGGFGRVYRGHLEEINEIVAVKQLDKDGFQGNREFLVEVLMLSLLHHPNLVKLLGYCTDMDQRILVYECMRNGSLEDHLLDLPPKAKPLPWQTRMKIAVGAAKGIEYLHEVANPPVIYRDLKTSNILLDEDFNSKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGKLTKTSDIYSFGVVLLEIITGRRAIDTSRPTHEQVLVQWAAPLVKDKKRFVRLADPLLEEKFPLKGLYQALAIASMCLQEDASNRPMISDVVAALSFLAEQKYHPQDGPDQAARKSRDRDCSNPPRKTDMVSEIKADDEIKHR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0035590 | OsNaBo_01g0035590.02 | Chr01 | 34018502 | 34020564 | + | IsoSeq | ||
| CDS seq | atgtctgcaacgtgtacgcagccgaggggattctacggatcacccatcagaacatccccagcatggtgctcacgtacaggcagctatgcaacgccaccgactccttcagcccgaacaacctgctcggggaaggcggctttgggagggtgtacagaggccacctcgaagagatcaacgagatcgtcgccgtcaAGCagctggacaaggacgggttccaggggaaccgcgagttcctggtggagg
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| Protein seq | MSATCTQPRGFYGSPIRTSPAWCSRTGSYATPPTPSARTTCSGKAALGGCTEATSKRSTRSSPSSSWTRTGSRGTASSWWR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr01 | 34019893 | 34019996 | + | OsNaBo_01g0035590.01 | OsNaBo_01g0035590.02,OsNaBo_01g0035590.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 36.818943 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0789200 | RBH | 0.000000 | 0.000000 | 25.634792 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g57940 | RBH | 0.000000 | 0.000000 | 6.572442 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0789200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036350 | RBH | 0.000000 | 0.000000 | 11.016304 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035850 | RBH | 0.000000 | 0.000000 | 14.251701 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036240 | RBH | 0.000000 | 0.000000 | 34.953472 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035630 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0035380 | RBH | 0.000000 | 0.0 | 23.361301 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0554100 | RBH | 0.041062 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0035120 | RBH | 0.0 | 0.000000 | 10.394098 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0549900 | RBH | 0.018497 | 0 | 0.0045855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0035260 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0035310 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0035550 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0035620 | RBH | 0.0 | 0.0 | 2.660924 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0035440 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G035920 | RBH | 0.0 | 0.0 | 6.443313 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0022160 | RBH | 0.0 | 0.000000 | 3.051026 |
