Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0789200 | OGI:01100520 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:33494608-33496692 | ||||||||
| Gene Symbol | RLCK45, OsRLCK45 | ||||||||||
| DNA seq | GCGGATCGGCTCGAGGGTGTTTCCCCACTCTCGCGTCGATTCGCGCGATGGACCTGTTGACATCGGCGATGAAGAGATGCTGCAACGGCAAGACGCTCCTCCGCGGCGGCCGCACCTGTCGCTGCTCGTCCGCCAGCGCCATTGGATCTTCCGGTGTCCGTGGCAAGGAGGAAGCGTCGACTTCGGCGGCGGACTCCGAGCCGGATAAGAAGAGGTGGAGGAAGAAGAGGTTCTGGAGGAAGAAGAAGAAGAAGGCCAAGAAGGATCACTACGGCGACGCCGCCGCCACCGAGCACGGCAGCGAGCGCGCCAGCTGCAGGCGCTACGAGAACGACGCCGTGGCCGACCTCGTGAACGACATATCGTCCAAGTCAGGTAAACATATATGATATATGCAAGCAAAATATGCATAGAGAGAACCGATGCTTCGTCCCTCGATATGATCACGCTGATCATGCACGAGCTGTTGCGCACGCATGGCTGCAGATGTCTGCAACGTGTACGCAGCCGAGGGGATTCTACGGATCACCCACCAGAACATCCCCAGCATGGTGCTCACGTACAGGCAGCTATGCAACGCCACCGACTCCTTCAGCCCGAACAACCTGCTCGGGGAAGGCGGCTTTGGGAGGGTGTACAGAGGCCACCTCGAAGAGATCAACGAGGTAAGGCACCGATCAATATGCTACATGTCATCATGTACTCATGTCCATGCCTGCGCTGTAACGCACGCATATGCATGAACAAGCAGATCGTCGCCGTCAAGCAGCTGGACAAGGACGGGTTCCAGGGGAACCGCGAGTTCCTGGTGGAGGTGCTGATGCTCAGTCTCCTGCACCACCCCAACCTCGTCAAGCTGCTCGGCTACTGCACCGACATGGACCAGAGAATCCTCGTCTACGAGTGCATGCGGAACGGCTCGCTGGAGGATCATCTCCTAGGTACGTACGGGCGGCACAGCCAGCGTTGGATCGCCATGCCGTCGATTAATCCGCTGATCGATCGAGCGTGCGTGCGTGCAGATCTCCCTCCAAAGGCAAAGCCTCTCCCGTGGCAAACGCGGATGAAGATCGCGGTGGGCGCGGCGAAGGGCATCGAGTACCTGCACGAGGTGGCCAACCCGCCGGTGATCTACCGCGACCTCAAGACGTCCAACATCCTCCTGGACGAGGACTTCAACTCCAAGCTGTCCGACTTCGGCCTCGCCAAGCTCGGCCCCGTCGGCGACAAGAGCCACGTCAGCACGCGGGTCATGGGCACGTACGGCTACTGCGCCCCCGAGTACGCCATGACCGGCAAGCTCACCAAGACGTCGGACATCTACAGCTTCGGCGTCGTGCTGCTGGAGATCATCACCGGCAGGCGGGCGATCGATACCTCCAGGCCGACGCACGAGCAGGTTCTCGTCCAATGGGTGAGCAACTCACTGCCCTCGTCCTACAAAAATTAACCGATTTCGAGCTGCATTAATTAACTGGCTTCTCTGTGTGTGCAAACACAGGCGGCACCTCTCGTCAAGGACAAGAAGAGATTCGTGAGACTGGCTGACCCGTTGCTGGAAGAGAAATTCCCCCTCAAGGGGCTTTACCAAGCTCTCGCGATCGCCTCCATGTGCTTGCAGGAGGATGCCAGCAACAGGCCGATGATCAGCGACGTCGTCGCGGCGCTCTCGTTTCTTGCCGAGCAGAAGTATCATCCCCAAGATGGCCCGGATCAGGCCGCCCGGAAGAGCAGAGACAGGGACTGTAGCAATCCTCCCAGGAAGACAGACATGGTTTCTGAGATCAAGGCAGATGATGAAATCAAGCACAGGTGACCATAGAGGAGTAACAGCCTAGCAGGGAAGGGAGGAGCTGCAGGACTGTCTGCTCTCTTGAATTTCTTGTGTAATGTACACCACCTAGGCAGGATGTAACAGCAACAAGTCGATGTTGACTGGTACTTGGTCTGTTCGTCAGGATTCATTACCAGGTTATTGGAGCTCGCAGGACTGTCTGCTCTCTTGCAGTCCCAAGTTATTGGAGCTAACTATAGATACGATGAGAATGACAAGAATGATGACATTACCATAAGCCAGTTATATCG
More
|
||||||||||
| CDS seq | ATGGACCTGTTGACATCGGCGATGAAGAGATGCTGCAACGGCAAGACGCTCCTCCGCGGCGGCCGCACCTGTCGCTGCTCGTCCGCCAGCGCCATTGGATCTTCCGGTGTCCGTGGCAAGGAGGAAGCGTCGACTTCGGCGGCGGACTCCGAGCCGGATAAGAAGAGGTGGAGGAAGAAGAGGTTCTGGAGGAAGAAGAAGAAGAAGGCCAAGAAGGATCACTACGGCGACGCCGCCGCCACCGAGCACGGCAGCGAGCGCGCCAGCTGCAGGCGCTACGAGAACGACGCCGTGGCCGACCTCGTGAACGACATATCGTCCAAGTCAGATGTCTGCAACGTGTACGCAGCCGAGGGGATTCTACGGATCACCCACCAGAACATCCCCAGCATGGTGCTCACGTACAGGCAGCTATGCAACGCCACCGACTCCTTCAGCCCGAACAACCTGCTCGGGGAAGGCGGCTTTGGGAGGGTGTACAGAGGCCACCTCGAAGAGATCAACGAGATCGTCGCCGTCAAGCAGCTGGACAAGGACGGGTTCCAGGGGAACCGCGAGTTCCTGGTGGAGGTGCTGATGCTCAGTCTCCTGCACCACCCCAACCTCGTCAAGCTGCTCGGCTACTGCACCGACATGGACCAGAGAATCCTCGTCTACGAGTGCATGCGGAACGGCTCGCTGGAGGATCATCTCCTAGATCTCCCTCCAAAGGCAAAGCCTCTCCCGTGGCAAACGCGGATGAAGATCGCGGTGGGCGCGGCGAAGGGCATCGAGTACCTGCACGAGGTGGCCAACCCGCCGGTGATCTACCGCGACCTCAAGACGTCCAACATCCTCCTGGACGAGGACTTCAACTCCAAGCTGTCCGACTTCGGCCTCGCCAAGCTCGGCCCCGTCGGCGACAAGAGCCACGTCAGCACGCGGGTCATGGGCACGTACGGCTACTGCGCCCCCGAGTACGCCATGACCGGCAAGCTCACCAAGACGTCGGACATCTACAGCTTCGGCGTCGTGCTGCTGGAGATCATCACCGGCAGGCGGGCGATCGATACCTCCAGGCCGACGCACGAGCAGGTTCTCGTCCAATGGGCGGCACCTCTCGTCAAGGACAAGAAGAGATTCGTGAGACTGGCTGACCCGTTGCTGGAAGAGAAATTCCCCCTCAAGGGGCTTTACCAAGCTCTCGCGATCGCCTCCATGTGCTTGCAGGAGGATGCCAGCAACAGGCCGATGATCAGCGACGTCGTCGCGGCGCTCTCGTTTCTTGCCGAGCAGAAGTATCATCCCCAAGATGGCCCGGATCAGGCCGCCCGGAAGAGCAGAGACAGGGACTGTAGCAATCCTCCCAGGAAGACAGACATGGTTTCTGAGATCAAGGCAGATGATGAAATCAAGCACAGGTGA
More
|
||||||||||
| Protein seq | MDLLTSAMKRCCNGKTLLRGGRTCRCSSASAIGSSGVRGKEEASTSAADSEPDKKRWRKKRFWRKKKKKAKKDHYGDAAATEHGSERASCRRYENDAVADLVNDISSKSDVCNVYAAEGILRITHQNIPSMVLTYRQLCNATDSFSPNNLLGEGGFGRVYRGHLEEINEIVAVKQLDKDGFQGNREFLVEVLMLSLLHHPNLVKLLGYCTDMDQRILVYECMRNGSLEDHLLDLPPKAKPLPWQTRMKIAVGAAKGIEYLHEVANPPVIYRDLKTSNILLDEDFNSKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGKLTKTSDIYSFGVVLLEIITGRRAIDTSRPTHEQVLVQWAAPLVKDKKRFVRLADPLLEEKFPLKGLYQALAIASMCLQEDASNRPMISDVVAALSFLAEQKYHPQDGPDQAARKSRDRDCSNPPRKTDMVSEIKADDEIKHR |
||||||||||
| Function | Probable serine/threonine-protein kinase PBL23 [UniProtKB/Swiss-Prot:F4JEQ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0789200 | Os01t0789200-01 | Chr01 | 33494608 | 33496692 | + | irgsp1_rep | ||
| CDS seq | ATGGACCTGTTGACATCGGCGATGAAGAGATGCTGCAACGGCAAGACGCTCCTCCGCGGCGGCCGCACCTGTCGCTGCTCGTCCGCCAGCGCCATTGGATCTTCCGGTGTCCGTGGCAAGGAGGAAGCGTCGACTTCGGCGGCGGACTCCGAGCCGGATAAGAAGAGGTGGAGGAAGAAGAGGTTCTGGAGGAAGAAGAAGAAGAAGGCCAAGAAGGATCACTACGGCGACGCCGCCGCCACCGAGCACGGCAGCGAGCGCGCCAGCTGCAGGCGCTACGAGAACGACGCCGTGGCCGACCTCGTGAACGACATATCGTCCAAGTCAGATGTCTGCAACGTGTACGCAGCCGAGGGGATTCTACGGATCACCCACCAGAACATCCCCAGCATGGTGCTCACGTACAGGCAGCTATGCAACGCCACCGACTCCTTCAGCCCGAACAACCTGCTCGGGGAAGGCGGCTTTGGGAGGGTGTACAGAGGCCACCTCGAAGAGATCAACGAGATCGTCGCCGTCAAGCAGCTGGACAAGGACGGGTTCCAGGGGAACCGCGAGTTCCTGGTGGAGGTGCTGATGCTCAGTCTCCTGCACCACCCCAACCTCGTCAAGCTGCTCGGCTACTGCACCGACATGGACCAGAGAATCCTCGTCTACGAGTGCATGCGGAACGGCTCGCTGGAGGATCATCTCCTAGATCTCCCTCCAAAGGCAAAGCCTCTCCCGTGGCAAACGCGGATGAAGATCGCGGTGGGCGCGGCGAAGGGCATCGAGTACCTGCACGAGGTGGCCAACCCGCCGGTGATCTACCGCGACCTCAAGACGTCCAACATCCTCCTGGACGAGGACTTCAACTCCAAGCTGTCCGACTTCGGCCTCGCCAAGCTCGGCCCCGTCGGCGACAAGAGCCACGTCAGCACGCGGGTCATGGGCACGTACGGCTACTGCGCCCCCGAGTACGCCATGACCGGCAAGCTCACCAAGACGTCGGACATCTACAGCTTCGGCGTCGTGCTGCTGGAGATCATCACCGGCAGGCGGGCGATCGATACCTCCAGGCCGACGCACGAGCAGGTTCTCGTCCAATGGGCGGCACCTCTCGTCAAGGACAAGAAGAGATTCGTGAGACTGGCTGACCCGTTGCTGGAAGAGAAATTCCCCCTCAAGGGGCTTTACCAAGCTCTCGCGATCGCCTCCATGTGCTTGCAGGAGGATGCCAGCAACAGGCCGATGATCAGCGACGTCGTCGCGGCGCTCTCGTTTCTTGCCGAGCAGAAGTATCATCCCCAAGATGGCCCGGATCAGGCCGCCCGGAAGAGCAGAGACAGGGACTGTAGCAATCCTCCCAGGAAGACAGACATGGTTTCTGAGATCAAGGCAGATGATGAAATCAAGCACAGGTGA
More
|
|||||||
| Protein seq | MDLLTSAMKRCCNGKTLLRGGRTCRCSSASAIGSSGVRGKEEASTSAADSEPDKKRWRKKRFWRKKKKKAKKDHYGDAAATEHGSERASCRRYENDAVADLVNDISSKSDVCNVYAAEGILRITHQNIPSMVLTYRQLCNATDSFSPNNLLGEGGFGRVYRGHLEEINEIVAVKQLDKDGFQGNREFLVEVLMLSLLHHPNLVKLLGYCTDMDQRILVYECMRNGSLEDHLLDLPPKAKPLPWQTRMKIAVGAAKGIEYLHEVANPPVIYRDLKTSNILLDEDFNSKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGKLTKTSDIYSFGVVLLEIITGRRAIDTSRPTHEQVLVQWAAPLVKDKKRFVRLADPLLEEKFPLKGLYQALAIASMCLQEDASNRPMISDVVAALSFLAEQKYHPQDGPDQAARKSRDRDCSNPPRKTDMVSEIKADDEIKHR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0789200 | RBH | 0.000000 | 0.000000 | 25.634792 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g57940 | RBH | 0.000000 | 0.000000 | 6.572442 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0498900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036350 | RBH | 0.000000 | 0.000000 | 11.016304 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035850 | RBH | 0.000000 | 0.000000 | 14.251701 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036240 | RBH | 0.000000 | 0.000000 | 34.953472 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035630 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0035380 | RBH | 0.000000 | 0.0 | 23.361301 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0554100 | RBH | 0.041062 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0035120 | RBH | 0.0 | 0.000000 | 10.394098 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0549900 | RBH | 0.018497 | 0 | 0.0045855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0035260 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0035310 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0035550 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0035620 | RBH | 0.0 | 0.0 | 2.660924 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0035440 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G035920 | RBH | 0.0 | 0.0 | 6.443313 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0035590 | RBH | 0.000000 | 0.000000 | 36.818943 |
