Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0035020 | OGI:01099060 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:33552146-33559819 | ||||||||
| Gene Symbol | OsWD40-26, OsKTN80c | ||||||||||
| DNA seq | agagagagagAGgaAgaggaaaaaggaaggcgacgcggctgtcatctctctcgcccccgctcccttcccttctcctgctcagaataccaagtactccgatcccgaaccctctcccccctctcgtcgtcgacggcgacacgacgactccgctgccagcgcgtcggcctgccccagcggctcggagcaggggcggagagacgggaggatggaccccgagaagcgcggctacaggctccgtatccTttttttttttttttgctgctactgcgtcgttgggttgcccttctgtttgcccggttcttgatccgatttggctcggaggaggaaggaatcgtggtttgccggagcaatctgggtaggcatttgctcgagcggttgcgggggagtattatttcccctccctcaaattctagtcttgtgttgttgtgggtagtttcttggagcgacagtggtggtctcgagaaaattttcgccacctttttctttcttggcaatctgcgccaaggttgaagtcgtttcTgatttcaagaaggaactgaactaccactaaatgtttcaacaggttcagcaaatagtttcctttagtgcccagtttaggttagcaatgcgccaattcagaatcaccaagtctaatttgcttccgaagcaactataactaaattgtgaagttcatccgggAaaaaaacagctatgtattgatacggtttgatcagttattcaccTTttttagttgactacaaatcatagctgtggaagctgttactggctactttttggaagcatgcattgctcaagtttataactccttaacatggaaacccaaaatagaggaatttgtcgcacatgatgctgaagtgaggtccttgtctatcggcaagaagtcaagccgtgtgtttatcactggcggcagcgaccgcaaggttaacctgtgggccattggcaaacagacaccacttctggtttgtgcccctatcacagtgatggacacttctactggttatgttgaatttgactcatgccGTgtttctggcttattgtttgtgcagagcttatcaggccacactggctcAgttgaggctgttgagtttgatacagcagaggtgcttgtgcttgctggttcttcaaatggttccatcaagctctgggacttggaagaggctaaaggtgtggtcagtgttctaaaatcagcgctaggcaccgtgtagcaaccgcaattaggcactaggtggtgcattaggtggctattttagtgttatattatccaacttttatgtaactagAaaaaatgccTGtgtgttgcaacgagtgaatgctattttaaTtttattattgttatacggcttatttttagtaaatcgtgagctgcaattaggagtctgacttccatcgaaagttagcatgcaagtttttttaaaagaaaTttcttatacgacttcttttgtatttctAaaagcaaacaaacttaaaatccgactcatacacggATatgtatttccAaaagcgaacgaacttaaaaaccgactcaaatacatatgacgtaccaaaataccggtaaaaaacatcttcaatttttataatagtagagatatgtttgctaatttcttgggTTttactagttagtttgtcctaggcacctgctagctaggcgtcagccctgctaaccctctagtgcctagcgccttgaaccatgggtgtggttggtggcttattgctttataagtcctagaaattgtgctaccttaatgacttgccttttgctttgttgtaactgtctgttcatttctaaacaattatagaaaacatagccattacattccgtgatagtggtactatcaatgtacttgttagttgttagtacaaacttatttTAtattttgatacaaatgcttggtatccgctgtattaggttctttttctgattttcagtggctgcgattttaggaaactCAcaaatcttcgtcaaactgtctatgctctacgcttctgtatttggataaaagaagtgtgcttggctaatgtggataaccattgaaagcataacttaatagtgttcccatagatcataacaactgtgcttcttagtaatttagtaagctagatatgttattcatgttttgtcttgatatgcagttgtgcggtctcttactgggcacagatcaagttgcacctctgttgaattccatccatttggcgagTtttttgcatctggttcttcagatacagatcttaagatctgggatataaagaaaaaaggatgcattCAcacatataagggtcacagaggagcaattagaacaatcagatttacacctgatggacgatgggttgtcaccggcggagaagataatattgtaaaagtgtgggacttgacagctggaaagcttctacatgacttcaagttccatagtgggcaaatccggtgtattgattttcatccgcaagaatttttgcttgcaacaggtacctacTCGtttggcagttatttgtaaaacagagacttttggagacagcatctttattttctttgcagtataatcattgataaagctaatgctgaagtttgttataccaaattgtttctggtttagtatgatactatgaattttttgagaatacacaggatatatgatctaaataaatataatgtgttattgcTTttctatgtgcagtaagtgaagttttaagaagTttaagggtatactcattgaattcattaatattttccaggctcagctgatcgaacagttaagttttgggatcttgaaacttttgaattgattggttctgctggacccgaggtacttgctttacacATttttgtaataccaggctaattgttgcgtatgtttaacacaatattttggtaaaccatagagacaaattataacAatcattattttgtacgcatgcattTGAtttcgttggtgcccatgttttacatccattgtctcctttctatttagcaccactgtaacttcacgaaagatgtgctagggataaattttgtttccaatccttaaaaatggtttatgacctcccttgtcacatttttcaatgggttggttcttttagagatttttaatggatgctcttacatctagtttaaactttcttaccctgttccctgttgttcctgtattcaaacatgcatgacgggtaaatgcatctttctgttatgatattctttacattcttctcttccaggctactggtgttcgctctacggtctttcacccagatggaaaaaccctattctgtgggttagaccaaagcctaaaggtaaatctgattttgttatgtgggttgttgatgtacaatattttggtccctgttcaactatatgagcactttgttaggtattctcttgggagccagtaagatgtcatgacgttgttgacatgggatggagcaatttggctgaccttagtatttatgaaggaaaactcttgggatgctcctaccacgaatgccgagttggtgtttgggttgctgatatatcggtgagttttactttttgtctcatAGGatgtatttcttctatggtctaatcaatatctttcatccagctcattgggccctatgctcttggtgttttgcccaaagcaaatttctttgctgagctggtacattctttagacgacaatccttcgaaaacgattgataccactgccaagtccattcctgctctagcaacgacacatccAaaaaatctgtacaaggtcaaggaaacagggactggtactgcttcaaacacccatttgtctctcattatgtataatgtattgaagtacctttacttcgatacttcacactgatgctctctctctctctctctctctctctttctggtagtagctgaaagtggaattcgtggctcaaatttgactccagcaagtatggataaaaccaagagagataagagtggtgcaactcctcgaagacctgattcttctttcaaatcatctattcAGagctctactccaatgaggcgcatgaaagctgctgatagtccatacacaaatagaaaaacagtggagcgcaattttgcacagagggatgcctcgctagcatcccgtacgggaacagctaataattcttcaactgttaaaaaaggccatcttgctgagtcagtatctgtaaaagatatttacactacaccacagactgtttctgtgcctgtcgttatgcctagagacattttagaggacaaaacagcaggcagcattagtggaggaatcagaGggagagctgcagttgcagatgatttccatgctcctgttcattcaaggaaactttcagttaatagttttgtgggtgatagtgttaactcaacaaaatccatgctaactgatcctgatgtttgctctgagggtttctctggcttaaaattctcttttggactaactccatattacaagaaagaagaatatgataatgtggataaagttgatagtatggataaaggTGAtaatacacaaatgacagaaaaattggacagaacagtgtcgttggagcatcaacttcagtcaaatgatagtaagtcttagagatcctttcctacattctaagtttgcactctgcagttctgttcattttggcaaattgacgatgaaactctttcctactacagcctctgagccaccatgttcaactacagaaacaaccaaggtcaaatatgtcagaggagGTgtgtgtacgttaagagattgtctcggtatctacttgtgctaaaattagttctttaatggtacttttaactccttttgcagttgctgtgccattaggaaaaacaaagtctcttgttgagagatgggAaaagagagaggctactaatgttgagtgctcaccaccaactggttcttgtggtgaccgtgcagtgagatctgatggtccttcctccttttcagtatgtacccataattttaagcccaattaatttcaaagcaatttgaccttattatctggttggttggtgcattcatgaatgcatgaatgtttaagaactgtacttactattttcctaaagtccttggtgataatctcaaacaTttttcttaaaccaatttatctttctgggacatgttatacatactcactcttgcatattatacaatgtaaatttctgtattcgtttttccccttactgcgaagtacattctatctggagatagaagtAGaagggataaagtattgttagaaaccagattgtcataaatcataatgtaatgttttgtggacttaagtacttctgggagattggagtattttcagaaataaaatcagaatatgggctagaaaaatatgactttacctttgctccatttttatttgttcatgctctctagcatttacgaattttttcggtactcaaatcattatattttgcaatggttgtaatggacaggcagaaccaagtcaggcatatgagaaggacttgtcaacaattgatgaggcgatgattccaatcaatttgatgcagaaccatgatgaatttataaatgccgtaaaatctcggctgacaaagttagaggtgtgtcctgtctctgatctttttacttgcggacttctgtttgttaccagctcatgtgcaccatagaattccttccttgaccttttgtatccaataaacagggaaccaatcttgcatgccattgcatgatagattatacatatgatgaagttcttctgtgttctttaggctattcagtacagggaaaatggcttatcgttgttagtctattgagtacaattagacaacttagaattgaacattacctttttctttgatacttgcgttaaatgatttattggcattttcttaaagacaattggtgtggacacacctataaattgaaggtgaagtcagctctagtgaagattgttgatcaatcccGcaacaccctaaaattaatcagctagctttgaatccattatttctgatagcctgatataagatgagagtgatctacacttgtatgtaaattatgcattggcatgcacttttcccaccatctactaattatcctacaagtggagagtggggaatagtcagtgaggaaagcatttgaaaactagtaaaagttgcatatatcatagccatcactccatcagcatatgatattaatgttaactgtcttcagatgatgcgtcatgtctttgaccAaaatggtatcaaaggagcgattgctgcagtggcaaagttgcctgacaatgctgtaagtattctcaagatgccgtgcgatattcttggatgtacatgtacttcatattttttagctgctaatggtttgacccttttttttacaggttcaagctgatgttgttagtactctgaaggggaaacttgatctcttcaacctagacattttcttaagctttctgcctgttcttgcggggttactgaccagcaaggctgaaaggtgatatattggatgtctctattccattgcatgttggttcttgtctgactggaccaagtgatacatagtaacttaagcgcacatgctctgtgcacacatgtagacacaagatgctgctgttaaattgaattgtctatcctcttgttagtctgttcattctattgcaagcaaggtcatggatctattttctttacaaaaccatggagatattggcatcttacattagaaaatgtttggtttagtagtaactttgtcttatggttactttgcctttaatttcaatttgtaggcatgccattgtttctttggaattgttattggatcttataaagatctttggaccagttattcgttcaacattgtcagctcattcagcagttggagttgatattcaggctgagcagaggtacgtgcattaatgttattcaagggaatgctatttaaaggacgccgcaaaacctgcaaattgcaaagagacactggatgtgaggtgacaagtgggttctgtccctgcacttcagttaggaaccattgttttaaagaactgcagtgtttgtagcatcctataacctattgctctgcctatgccaagatgaactggactgttgctgacttcgttgatgtcacaggttgcaacgttgcagtcggtgttttaaccatttgcaaaagattcagcaagttctacacccgttgattatgtaattcctttccttcccctccctgtatgagatgctttatcctttactttatcagactattgttttcttaagcttgctgacagttgttcGTgtgcaccatgttgtttatttttgttgctacccacgtcatttgttggagctacctttcctgacattctgtgatggtttcatattttgctggtgcaggcggggtggtcaatcagcacaacttgcccaagaactgaacctgtctttgcaagacttggtggtgatctgaaacaagcggggaggttcattcatactagtacaacacagtgagagtagataactagacatcattctttttggcaaaaaacgcgccagcgccatacagtttttgtagcttgttgccatagctttgcaattgagctgtgtaattgtgttttgacttggcttttgattcggcgtagtcccctgttgtacatgtgagcttggctgtgcataatctgtaattaacatttgttacatggacagccccggatgagggagaagcaagttcaaaaatggttgatgtcagttcaacgtggtgattcattctc
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| CDS seq | gagagagagAGgaAgaggaaaaaggaaggcgacgcggctgtcatctctctcgcccccgctcccttcccttctcctgctcagaataccaagtactccgatcccgaaccctctcccccctctcgtcgtcgacggcgacacgacgactccgctgccagcgcgtcggcctgccccagcggctcggagcaggggcggagagacgggaggatggaccccgagaagcgcggctacaggctccaggaatttgtcgcacatgatgctgaagtgaggtccttgtctatcggcaagaagtcaagccgtgtgtttatcactggcggcagcgaccgcaaggttaacctgtgggccattggcaaacagacaccacttctgagcttatcaggccacactggctcAgttgaggctgttgagtttgatacagcagaggtgcttgtgcttgctggttcttcaaatggttccatcaagctctgggacttggaagaggctaaagttgtgcggtctcttactgggcacagatcaagttgcacctctgttgaattccatccatttggcgagTtttttgcatctggttcttcagatacagatcttaagatctgggatataaagaaaaaaggatgcattCAcacatataagggtcacagaggagcaattagaacaatcagatttacacctgatggacgatgggttgtcaccggcggagaagataatattgtaaaagtgtgggacttgacagctggaaagcttctacatgacttcaagttccatagtgggcaaatccggtgtattgattttcatccgcaagaatttttgcttgcaacaggctcagctgatcgaacagttaagttttgggatcttgaaacttttgaattgattggttctgctggacccgaggctactggtgttcgctctacggtctttcacccagatggaaaaaccctattctgtgggttagaccaaagcctaaaggtattctcttgggagccagtaagatgtcatgacgttgttgacatgggatggagcaatttggctgaccttagtatttatgaaggaaaactcttgggatgctcctaccacgaatgccgagttggtgtttgggttgctgatatatcgctcattgggccctatgctcttggtgttttgcccaaagcaaatttctttgctgagctggtacattctttagacgacaatccttcgaaaacgattgataccactgccaagtccattcctgctctagcaacgacacatccAaaaaatctgtacaaggtcaaggaaacagggactgctgaaagtggaattcgtggctcaaatttgactccagcaagtatggataaaaccaagagagataagagtggtgcaactcctcgaagacctgattcttctttcaaatcatctattcAGagctctactccaatgaggcgcatgaaagctgctgatagtccatacacaaatagaaaaacagtggagcgcaattttgcacagagggatgcctcgctagcatcccgtacgggaacagctaataattcttcaactgttaaaaaaggccatcttgctgagtcagtatctgtaaaagatatttacactacaccacagactgtttctgtgcctgtcgttatgcctagagacattttagaggacaaaacagcaggcagcattagtggaggaatcagaGggagagctgcagttgcagatgatttccatgctcctgttcattcaaggaaactttcagttaatagttttgtgggtgatagtgttaactcaacaaaatccatgctaactgatcctgatgtttgctctgagggtttctctggcttaaaattctcttttggactaactccatattacaagaaagaagaatatgataatgtggataaagttgatagtatggataaaggTGAtaatacacaaatgacagaaaaattggacagaacagtgtcgttggagcatcaacttcagtcaaatgatacctctgagccaccatgttcaactacagaaacaaccaaggtcaaatatgtcagaggagttgctgtgccattaggaaaaacaaagtctcttgttgagagatgggAaaagagagaggctactaatgttgagtgctcaccaccaactggttcttgtggtgaccgtgcagtgagatctgatggtccttcctccttttcagcagaaccaagtcaggcatatgagaaggacttgtcaacaattgatgaggcgatgattccaatcaatttgatgcagaaccatgatgaatttataaatgccgtaaaatctcggctgacaaagttagagatgatgcgtcatgtctttgaccAaaatggtatcaaaggagcgattgctgcagtggcaaagttgcctgacaatgctgttcaagctgatgttgttagtactctgaaggggaaacttgatctcttcaacctagacattttcttaagctttctgcctgttcttgcggggttactgaccagcaaggctgaaaggcatgccattgtttctttggaattgttattggatcttataaagatctttggaccagttattcgttcaacattgtcagctcattcagcagttggagttgatattcaggctgagcagaggttgcaacgttgcagtcggtgttttaaccatttgcaaaagattcagcaagttctacacccgttgattatgcggggtggtcaatcagcacaacttgcccaagaactgaacctgtctttgcaagacttggtggtg
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| Protein seq | ERERKRKKEGDAAVISLAPAPFPSPAQNTKYSDPEPSPPSRRRRRHDDSAASASACPSGSEQGRRDGRMDPEKRGYRLQEFVAHDAEVRSLSIGKKSSRVFITGGSDRKVNLWAIGKQTPLLSLSGHTGSVEAVEFDTAEVLVLAGSSNGSIKLWDLEEAKVVRSLTGHRSSCTSVEFHPFGEFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLHDFKFHSGQIRCIDFHPQEFLLATGSADRTVKFWDLETFELIGSAGPEATGVRSTVFHPDGKTLFCGLDQSLKVFSWEPVRCHDVVDMGWSNLADLSIYEGKLLGCSYHECRVGVWVADISLIGPYALGVLPKANFFAELVHSLDDNPSKTIDTTAKSIPALATTHPKNLYKVKETGTAESGIRGSNLTPASMDKTKRDKSGATPRRPDSSFKSSIQSSTPMRRMKAADSPYTNRKTVERNFAQRDASLASRTGTANNSSTVKKGHLAESVSVKDIYTTPQTVSVPVVMPRDILEDKTAGSISGGIRGRAAVADDFHAPVHSRKLSVNSFVGDSVNSTKSMLTDPDVCSEGFSGLKFSFGLTPYYKKEEYDNVDKVDSMDKGDNTQMTEKLDRTVSLEHQLQSNDTSEPPCSTTETTKVKYVRGVAVPLGKTKSLVERWEKREATNVECSPPTGSCGDRAVRSDGPSSFSAEPSQAYEKDLSTIDEAMIPINLMQNHDEFINAVKSRLTKLEMMRHVFDQNGIKGAIAAVAKLPDNAVQADVVSTLKGKLDLFNLDIFLSFLPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQRLQRCSRCFNHLQKIQQVLHPLIMRGGQSAQLAQELNLSLQDLVV |
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| Function | Katanin p80 WD40 repeat-containing subunit B1 homolog [UniProtKB/Swiss-Prot:Q8H0T9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0035020 | OsNaBo_01g0035020.01 | Chr01 | 33552351 | 33559819 | + | NAM | ||
| CDS seq | atggaccccgagaagcgcggctacaggctccctgtggaagctgttactggctactttttggaagcatgcattgctcaagtttataactccttaacatggaaacccaaaatagaggaatttgtcgcacatgatgctgaagtgaggtccttgtctatcggcaagaagtcaagccgtgtgtttatcactggcggcagcgaccgcaaggttaacctgtgggccattggcaaacagacaccacttctgagcttatcaggccacactggctcAgttgaggctgttgagtttgatacagcagaggtgcttgtgcttgctgttgtgcggtctcttactgggcacagatcaagttgcacctctgttgaattccatccatttggcgagTtttttgcatctggttcttcagatacagatcttaagatctgggatataaagaaaaaaggatgcattCAcacatataagggtcacagaggagcaattagaacaatcagatttacacctgatggacgatgggttgtcaccggcggagaagataatattgtaaaagtgtgggacttgacagctggaaagcttctacatgacttcaagttccatagtgggcaaatccggtgtattgattttcatccgcaagaatttttgcttgcaacaggctcagctgatcgaacagttaagttttgggatcttgaaacttttgaattgattggttctgctggacccgaggctactggtgttcgctctacggtctttcacccagatggaaaaaccctattctgtgggttagaccaaagcctaaaggtattctcttgggagccagtaagatgtcatgacgttgttgacatgggatggagcaatttggctgaccttagtatttatgaaggaaaactcttgggatgctcctaccacgaatgccgagttggtgtttgggttgctgatatatcgctcattgggccctatgctcttggtgttttgcccaaagcaaatttctttgctgagctggtacattctttagacgacaatccttcgaaaacgattgataccactgccaagtccattcctgctctagcaacgacacatccAaaaaatctgtacaaggtcaaggaaacagggactgtagctgaaagtggaattcgtggctcaaatttgactccagcaagtatggataaaaccaagagagataagagtggtgcaactcctcgaagacctgattcttctttcaaatcatctattcAGagctctactccaatgaggcgcatgaaagctgctgatagtccatacacaaatagaaaaacagtggagcgcaattttgcacagagggatgcctcgctagcatcccgtacgggaacagctaataattcttcaactgttaaaaaaggccatcttgctgagtcagtatctgtaaaagatatttacactacaccacagactaaagaagaatatgataatgtggataaagttgatagtatggataaaggTGAtaatacacaaatgacagaaaaattggacagaacagtgtcgttggagcatcaacttcagtcaaatgatacctctgagccaccatgttcaactacagaaacaaccaaggtcaaatatgtcagaggagttgctgtgccattaggaaaaacaaagtctcttgttgagagatgggAaaagagagaggctactaatgttgagtgctcaccaccaactggttcttgtggtgaccgtgcagtgagatctgatggtccttcctccttttcagcagaaccaagtcaggcatatgagaaggacttgtcaacaattgatgaggcgatgattccaatcaatttgatgcagaaccatgatgaatttataaatgccgtaaaatctcggctgacaaagttagagatgatgcgtcatgtctttgaccAaaatggtatcaaaggagcgattgctgcagtggcaaagttgcctgacaatgctgttcaagctgatgttgttagtactctgaaggggaaacttgatctcttcaacctagacattttcttaagctttctgcctgttcttgcggggttactgaccagcaaggctgaaaggcatgccattgtttctttggaattgttattggatcttataaagatctttggaccagttattcgttcaacattgtcagctcattcagcagttggagttgatattcaggctgagcagaggtacgtgcattaa
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| Protein seq | MDPEKRGYRLPVEAVTGYFLEACIAQVYNSLTWKPKIEEFVAHDAEVRSLSIGKKSSRVFITGGSDRKVNLWAIGKQTPLLSLSGHTGSVEAVEFDTAEVLVLAVVRSLTGHRSSCTSVEFHPFGEFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLHDFKFHSGQIRCIDFHPQEFLLATGSADRTVKFWDLETFELIGSAGPEATGVRSTVFHPDGKTLFCGLDQSLKVFSWEPVRCHDVVDMGWSNLADLSIYEGKLLGCSYHECRVGVWVADISLIGPYALGVLPKANFFAELVHSLDDNPSKTIDTTAKSIPALATTHPKNLYKVKETGTVAESGIRGSNLTPASMDKTKRDKSGATPRRPDSSFKSSIQSSTPMRRMKAADSPYTNRKTVERNFAQRDASLASRTGTANNSSTVKKGHLAESVSVKDIYTTPQTKEEYDNVDKVDSMDKGDNTQMTEKLDRTVSLEHQLQSNDTSEPPCSTTETTKVKYVRGVAVPLGKTKSLVERWEKREATNVECSPPTGSCGDRAVRSDGPSSFSAEPSQAYEKDLSTIDEAMIPINLMQNHDEFINAVKSRLTKLEMMRHVFDQNGIKGAIAAVAKLPDNAVQADVVSTLKGKLDLFNLDIFLSFLPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQRYVH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0035020 | OsNaBo_01g0035020.02 | Chr01 | 33552351 | 33559819 | + | NAM | ||
| CDS seq | atggaccccgagaagcgcggctacaggctccctgtggaagctgttactggctactttttggaagcatgcattgctcaagtttataactccttaacatggaaacccaaaatagaggaatttgtcgcacatgatgctgaagtgaggtccttgtctatcggcaagaagtcaagccgtgtgtttatcactggcggcagcgaccgcaaggttaacctgtgggccattggcaaacagacaccacttctgagcttatcaggccacactggctcAgttgaggctgttgagtttgatacagcagaggtgcttgtgcttgctgttgtgcggtctcttactgggcacagatcaagttgcacctctgttgaattccatccatttggcgagTtttttgcatctggttcttcagatacagatcttaagatctgggatataaagaaaaaaggatgcattCAcacatataagggtcacagaggagcaattagaacaatcagatttacacctgatggacgatgggttgtcaccggcggagaagataatattgtaaaagtgtgggacttgacagctggaaagcttctacatgacttcaagttccatagtgggcaaatccggtgtattgattttcatccgcaagaatttttgcttgcaacaggctcagctgatcgaacagttaagttttgggatcttgaaacttttgaattgattggttctgctggacccgaggctactggtgttcgctctacggtctttcacccagatggaaaaaccctattctgtgggttagaccaaagcctaaaggtattctcttgggagccagtaagatgtcatgacgttgttgacatgggatggagcaatttggctgaccttagtatttatgaaggaaaactcttgggatgctcctaccacgaatgccgagttggtgtttgggttgctgatatatcgctcattgggccctatgctcttggtgttttgcccaaagcaaatttctttgctgagctggtacattctttagacgacaatccttcgaaaacgattgataccactgccaagtccattcctgctctagcaacgacacatccAaaaaatctgtacaaggtcaaggaaacagggactgtagctgaaagtggaattcgtggctcaaatttgactccagcaagtatggataaaaccaagagagataagagtggtgcaactcctcgaagacctgattcttctttcaaatcatctattcAGagctctactccaatgaggcgcatgaaagctgctgatagtccatacacaaatagaaaaacagtggagcgcaattttgcacagagggatgcctcgctagcatcccgtacgggaacagctaataattcttcaactgttaaaaaaggccatcttgctgagtcagtatctgtaaaagatatttacactacaccacagactaaagaagaatatgataatgtggataaagttgatagtatggataaaggTGAtaatacacaaatgacagaaaaattggacagaacagtgtcgttggagcatcaacttcagtcaaatgatacctctgagccaccatgttcaactacagaaacaaccaaggtcaaatatgtcagaggagttgctgtgccattaggaaaaacaaagtctcttgttgagagatgggAaaagagagaggctactaatgttgagtgctcaccaccaactggttcttgtggtgaccgtgcagtgagatctgatggtccttcctccttttcagcagaaccaagtcaggcatatgagaaggacttgtcaacaattgatgaggcgatgattccaatcaatttgatgcagaaccatgatgaatttataaatgccgtaaaatctcggctgacaaagttagagatgatgcgtcatgtctttgaccAaaatggtatcaaaggagcgattgctgcagtggcaaagttgcctgacaatgctgttcaagctgatgttgttagtactctgaaggggaaacttgatctcttcaacctagacattttcttaagctttctgcctgttcttgcggggttactgaccagcaaggctgaaaggcatgccattgtttctttggaattgttattggatcttataaagatctttggaccagttattcgttcaacattgtcagctcattcagcagttggagttgatattcaggctgagcagaggttgcaacgttgcagtcggtgttttaaccatttgcaaaagattcagcaagttctacacccgttgattatgcggggtggtcaatcagcacaacttgcccaagaactgaacctgtctttgcaagacttggtggtgatctga
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| Protein seq | MDPEKRGYRLPVEAVTGYFLEACIAQVYNSLTWKPKIEEFVAHDAEVRSLSIGKKSSRVFITGGSDRKVNLWAIGKQTPLLSLSGHTGSVEAVEFDTAEVLVLAVVRSLTGHRSSCTSVEFHPFGEFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLHDFKFHSGQIRCIDFHPQEFLLATGSADRTVKFWDLETFELIGSAGPEATGVRSTVFHPDGKTLFCGLDQSLKVFSWEPVRCHDVVDMGWSNLADLSIYEGKLLGCSYHECRVGVWVADISLIGPYALGVLPKANFFAELVHSLDDNPSKTIDTTAKSIPALATTHPKNLYKVKETGTVAESGIRGSNLTPASMDKTKRDKSGATPRRPDSSFKSSIQSSTPMRRMKAADSPYTNRKTVERNFAQRDASLASRTGTANNSSTVKKGHLAESVSVKDIYTTPQTKEEYDNVDKVDSMDKGDNTQMTEKLDRTVSLEHQLQSNDTSEPPCSTTETTKVKYVRGVAVPLGKTKSLVERWEKREATNVECSPPTGSCGDRAVRSDGPSSFSAEPSQAYEKDLSTIDEAMIPINLMQNHDEFINAVKSRLTKLEMMRHVFDQNGIKGAIAAVAKLPDNAVQADVVSTLKGKLDLFNLDIFLSFLPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQRLQRCSRCFNHLQKIQQVLHPLIMRGGQSAQLAQELNLSLQDLVVI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0035020 | OsNaBo_01g0035020.03 | Chr01 | 33552146 | 33559813 | + | IsoSeq | ||
| CDS seq | gagagagagAGgaAgaggaaaaaggaaggcgacgcggctgtcatctctctcgcccccgctcccttcccttctcctgctcagaataccaagtactccgatcccgaaccctctcccccctctcgtcgtcgacggcgacacgacgactccgctgccagcgcgtcggcctgccccagcggctcggagcaggggcggagagacgggaggatggaccccgagaagcgcggctacaggctccaggaatttgtcgcacatgatgctgaagtgaggtccttgtctatcggcaagaagtcaagccgtgtgtttatcactggcggcagcgaccgcaaggttaacctgtgggccattggcaaacagacaccacttctgagcttatcaggccacactggctcAgttgaggctgttgagtttgatacagcagaggtgcttgtgcttgctggttcttcaaatggttccatcaagctctgggacttggaagaggctaaagttgtgcggtctcttactgggcacagatcaagttgcacctctgttgaattccatccatttggcgagTtttttgcatctggttcttcagatacagatcttaagatctgggatataaagaaaaaaggatgcattCAcacatataagggtcacagaggagcaattagaacaatcagatttacacctgatggacgatgggttgtcaccggcggagaagataatattgtaaaagtgtgggacttgacagctggaaagcttctacatgacttcaagttccatagtgggcaaatccggtgtattgattttcatccgcaagaatttttgcttgcaacaggctcagctgatcgaacagttaagttttgggatcttgaaacttttgaattgattggttctgctggacccgaggctactggtgttcgctctacggtctttcacccagatggaaaaaccctattctgtgggttagaccaaagcctaaaggtattctcttgggagccagtaagatgtcatgacgttgttgacatgggatggagcaatttggctgaccttagtatttatgaaggaaaactcttgggatgctcctaccacgaatgccgagttggtgtttgggttgctgatatatcgctcattgggccctatgctcttggtgttttgcccaaagcaaatttctttgctgagctggtacattctttagacgacaatccttcgaaaacgattgataccactgccaagtccattcctgctctagcaacgacacatccAaaaaatctgtacaaggtcaaggaaacagggactgctgaaagtggaattcgtggctcaaatttgactccagcaagtatggataaaaccaagagagataagagtggtgcaactcctcgaagacctgattcttctttcaaatcatctattcAGagctctactccaatgaggcgcatgaaagctgctgatagtccatacacaaatagaaaaacagtggagcgcaattttgcacagagggatgcctcgctagcatcccgtacgggaacagctaataattcttcaactgttaaaaaaggccatcttgctgagtcagtatctgtaaaagatatttacactacaccacagactgtttctgtgcctgtcgttatgcctagagacattttagaggacaaaacagcaggcagcattagtggaggaatcagaGggagagctgcagttgcagatgatttccatgctcctgttcattcaaggaaactttcagttaatagttttgtgggtgatagtgttaactcaacaaaatccatgctaactgatcctgatgtttgctctgagggtttctctggcttaaaattctcttttggactaactccatattacaagaaagaagaatatgataatgtggataaagttgatagtatggataaaggTGAtaatacacaaatgacagaaaaattggacagaacagtgtcgttggagcatcaacttcagtcaaatgatacctctgagccaccatgttcaactacagaaacaaccaaggtcaaatatgtcagaggagttgctgtgccattaggaaaaacaaagtctcttgttgagagatgggAaaagagagaggctactaatgttgagtgctcaccaccaactggttcttgtggtgaccgtgcagtgagatctgatggtccttcctccttttcagcagaaccaagtcaggcatatgagaaggacttgtcaacaattgatgaggcgatgattccaatcaatttgatgcagaaccatgatgaatttataaatgccgtaaaatctcggctgacaaagttagagatgatgcgtcatgtctttgaccAaaatggtatcaaaggagcgattgctgcagtggcaaagttgcctgacaatgctgttcaagctgatgttgttagtactctgaaggggaaacttgatctcttcaacctagacattttcttaagctttctgcctgttcttgcggggttactgaccagcaaggctgaaaggcatgccattgtttctttggaattgttattggatcttataaagatctttggaccagttattcgttcaacattgtcagctcattcagcagttggagttgatattcaggctgagcagaggttgcaacgttgcagtcggtgttttaaccatttgcaaaagattcagcaagttctacacccgttgattatgcggggtggtcaatcagcacaacttgcccaagaactgaacctgtctttgcaagacttggtggtg
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| Protein seq | ERERKRKKEGDAAVISLAPAPFPSPAQNTKYSDPEPSPPSRRRRRHDDSAASASACPSGSEQGRRDGRMDPEKRGYRLQEFVAHDAEVRSLSIGKKSSRVFITGGSDRKVNLWAIGKQTPLLSLSGHTGSVEAVEFDTAEVLVLAGSSNGSIKLWDLEEAKVVRSLTGHRSSCTSVEFHPFGEFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLHDFKFHSGQIRCIDFHPQEFLLATGSADRTVKFWDLETFELIGSAGPEATGVRSTVFHPDGKTLFCGLDQSLKVFSWEPVRCHDVVDMGWSNLADLSIYEGKLLGCSYHECRVGVWVADISLIGPYALGVLPKANFFAELVHSLDDNPSKTIDTTAKSIPALATTHPKNLYKVKETGTAESGIRGSNLTPASMDKTKRDKSGATPRRPDSSFKSSIQSSTPMRRMKAADSPYTNRKTVERNFAQRDASLASRTGTANNSSTVKKGHLAESVSVKDIYTTPQTVSVPVVMPRDILEDKTAGSISGGIRGRAAVADDFHAPVHSRKLSVNSFVGDSVNSTKSMLTDPDVCSEGFSGLKFSFGLTPYYKKEEYDNVDKVDSMDKGDNTQMTEKLDRTVSLEHQLQSNDTSEPPCSTTETTKVKYVRGVAVPLGKTKSLVERWEKREATNVECSPPTGSCGDRAVRSDGPSSFSAEPSQAYEKDLSTIDEAMIPINLMQNHDEFINAVKSRLTKLEMMRHVFDQNGIKGAIAAVAKLPDNAVQADVVSTLKGKLDLFNLDIFLSFLPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQRLQRCSRCFNHLQKIQQVLHPLIMRGGQSAQLAQELNLSLQDLVV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 33552381 | 33552974 | + | OsNaBo_01g0035020.01,OsNaBo_01g0035020.02 | OsNaBo_01g0035020.02,OsNaBo_01g0035020.01,OsNaBo_01g0035020.03 | All |
| A3 | Chr01 | 33555883 | 33556001 | + | OsNaBo_01g0035020.01,OsNaBo_01g0035020.02 | OsNaBo_01g0035020.02,OsNaBo_01g0035020.01,OsNaBo_01g0035020.03 | All |
| RI | Chr01 | 33558854 | 33559262 | + | OsNaBo_01g0035020.01 | OsNaBo_01g0035020.02,OsNaBo_01g0035020.01,OsNaBo_01g0035020.03 | All |
| A5 | Chr01 | 33553261 | 33554276 | + | OsNaBo_01g0035020.03 | OsNaBo_01g0035020.01,OsNaBo_01g0035020.02,OsNaBo_01g0035020.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.173600 | 21.388336 | 8.667503 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0780400 | RBH | 2.716963 | 2.210210 | 6.450016 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g57210 | RBH | 1.674319 | 1.229730 | 1.511944 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0780400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0035850 | RBH | 0.611585 | 10.239805 | 8.657667 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035350 | RBH | 0.302860 | 3.178555 | 1.783437 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0035720 | RBH | 0.456811 | 18.111542 | 12.490051 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035120 | RBH | 0.395425 | 0.365364 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0034840 | RBH | 6.425249 | 20.029707 | 22.861834 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0546400 | RBH | 11.416936 | 22.3018055 | 32.0632255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0034570 | RBH | 0.119118 | 0.915994 | 1.230627 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0542200 | RBH | 11.889932 | 11.8082225 | 28.4764375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0034700 | RBH | 0.232354 | 0.191884 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0034770 | RBH | 0.454174 | 14.076297 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0035000 | RBH | 4.082310 | 7.885533 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0035100 | RBH | 0.915610 | 1.668587 | 0.925793 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0034900 | RBH | 0.117624 | 5.665008 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G019730 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019440 | RBH | 0.0 | 0.0 | 0.0 |
