Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0029500 | OGI:01077420 | 12/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:29369622-29373869 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggaaatgggtcgcgacccaacccacgcattccgcccccggctccgatctgctaagCcccctcggatcgggttgcgggtcccctcctCccccccgacccaccaccgctcgccgccggccgcctccgacgaggtcagtccccgctcccttcctcgcccttCcccccatccccacgCTGCctcctccgcctcctccgtggtgttatcgggtccagtaaccggagtcataaaccctagccgagggcgcggtctacgagctgcttcgtgcccgatttcatgggattcgagtgtggggattggacccatggaggctccgatttagcttgtatcttccagatcgctcccttgtatacgctgattgcgtcgttggtttgggacactggggattcgggcgggttgagccggtgaggtgaggggatttagtgaaggtattttgtgcgtgtttcatcaaccgggcggaatggcagcttgctgcatctccagatgttttaatgggatttgtggattatcagaggcgttctgtagtgtgagtgtatgcttaggatatgagcttttcctgccaatttctacttgcgcgtgtatagttatagcttgtggctacaagtagaagagggcatggagaaaATatagtaacatcaaaggtcactcattgctttccagtgttttggacgcgtgagagtttgtctggaaaagagagtcaaaatgatgctattaccttttctttgtatggatgtagtgtctttatatAtactatattgctactagtgttgcatgatgtgcTtgtttggatctgctgcagtgggcgatcatatttagatacaagatagcatgctggagccaacagctatggaagtgccgattactagctcagtgaacactgcagtggtgcctgtgcctgtggtgcacaatccacgggcacggaaattgcggtctgcagtttggcaggacttcactaaggaacggcgtgctgatggaagctgtgttgCTGTctgtaaccactgtaagaagcagctcacagctactagccggtcaggcaccacacacctacgcaaccacctcgcaatctgcaccaccacctccacgcgtcgtgctggtaagcgccggaagcttattgtgcgccgtattctccacaacaaaacctccactgatggacagtctggtgacggacatgcttcgggagaggaccatgacaacgatggcacgcattttgaccaagaactcagtcggcgagatcttgcccatatgattgtccagcatgggtaccggttttcaatagtggatgatgtgggcttccaaaagtttgtcaagaacctccagccgcagtttaggatggtgtcatatgaaacagtgagggctgatagcatgacaatttatgaaagcgagaagctgaagctgcaggatgctctgctcaagatcccttgccgacttagtatctcagttgatatgtggcgatcgaatacacagatggacttcttgtgtttgacctgtcactatattgaccatgccaatgatgagtggaaagttaggaaaaaaattctgaactttgtgcatgtggaggcaccttttacagatgatcagattgctagtctcattctagagaagttgcgtgagtggggtattgacaggaagctagctgccattgtactggacaactgcgcctctggtgagattgttgctagagagcttctcgtagttctgcagcctaggagactcctcctattaaatgggaatttgttccaggtgcgctcttgtgcgcacattcttaacctcacagtccaagaaagcttagaacagacatctgatataattactagagtccgtgagatgattcagaatgtcaagttctcacaagaaaggtttgaaaagtttcaggatactgcaaaactgttgcagatggaccaaaaactgctagttcttgattctcctaataactggccgtctacatacttaatgtttgattctgcatgttactatcatgatgttctcatgcgccttgcagaacaggaagcacattatggtgcttttctcactgcgaaggagtgggccgatgtgaaagccctcactgaaatacttgatgcgctctatcataagatggagaagtttcctgtggaaaatccgactgcaaatctctattttaatgacatgtgtgaggtgcatgttcttttgaatacctggcgtaatagtccatctccTGTtgttgcacaagtggctgaccgaatgctgacaaaatttgaggggtactgggaTCttactagaccagtaatggcattcgcatctattctggatcctcgatataagatgaagtctgttgagtacttctgtagactcatatatgctgCtgatcaatttagagcaaagacaacaatagatgacattcggcagagttttaccaatttgtgcagtgaatatgaacagtcaggaaattcattcaagaatccatctgctctcttctactctgcaaccagtaattcttgcatgagttcggtatacagcaatggtgatgattttaagaccttctcccgtatcacattatctgatgctcgaaggggacttgatcaATatatacaggagacgtcatcaggccaatcctttaagtctgacttagacatgtaccttgaggaaccggtctatcgccaaaaggaagggcatttagataaTtttgacatcctgggatggtggaagtcctttgcagcaaagtatcctgtcctttctcaaatggctcgtgatattttagctatccctgtatctatcatcccattggacagtgatgctcggacattaaatgagtatctcagtaccatggacccttcaacagtgcagggattggtatgtgcgcaagattggttgcgggaagatacagaaggtaccactaggtcacaccttctacagtaagttatatttctgccgggcatgttaatctgaattatttgtttcacttgtgcttttgcagttgctagttcagacggtcatgcagatgacaaagcggcacgtggtgatgaacttatcgtgttaccaaaataggtaatatattggacgcagatcacttgtttcagtttgctttgatacttttatcttttcccagatgtgcattcatgtgacgttctcatgcagaaagtttgggaggagcttcaatatttatgcttacatattcaagtgtttgaCTttctctgtttgctcatgttttcaaaaccttgaatacattgaagatcaaatctatatctatactctggtgcaaagattatgttcaataatATAatttatccaacagcagtgtttgggcttaCcctgagcagaatatccctactttcaaatagtagtatgcgttggaagtttgagttacaTttttctcgaacaccagttcaagttacatgacatcattgattgagaagatcatgtgcacagatgttgctaagcttacaaactgcctaattgaattgctcatgaattcttgtttgtacaatttcataaatgcataaggggaataaaTaaaaacattctctaaaaagaaatggctacgtgaagcaccatttgctagaactgaaacctgttgaccatagtatttgtactcttaggcttgtagcctgctaatttactcacggcttcagatctcgatattagctaatactccgtattacttaagtacttccttctatacgttttcatataaactttctttactctccatttgcaatcaacttagtgtgattttttttaaaacccgtacagctaaaaaaatgaagaaaaatagcacactgtatatttcttttcttcacttagactactggagtacaacaatcggagtatccgatccacagtaattcaccaccgaaatggtagtgttttaggtgcaattttcttcgttggtgcaggttgcacaatggtattaactttagccaattgcggttgttatgcttgtggcctgatacttgacgaattggttaagttaaaaatatgttacttcTtttattgtattgggcaccaggattattacatcttcatttttacttgtctgcagttgagacttctgattgatggctcctgagtcctgaggagaccaaggaggcgaggacgcaagtaactgcatcatttatgttcaacagtccaatttccaggcttccagctacacccctgtaaatgtatcgttctagttctagatctgtttgtacaatgaagtcgtaggtacctccaagaaggtagtatcaatttaggcaattgactctgcattaatgacttaatgtgtattatgctgct
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| CDS seq | atgctggagccaacagctatggaagtgccgattactagctcagtgaacactgcagtggtgcctgtgcctgtggtgcacaatccacgggcacggaaattgcggtctgcagtttggcaggacttcactaaggaacggcgtgctgatggaagctgtgttgCTGTctgtaaccactgtaagaagcagctcacagctactagccggtcaggcaccacacacctacgcaaccacctcgcaatctgcaccaccacctccacgcgtcgtgctggtaagcgccggaagcttattgtgcgccatgatcagattgctagtctcattctagagaagttgcgtgagtggggtattgacaggaagctagctgccattgtactggacaactgcgcctctggtgagattgttgctagagagcttctcgtagttctgcagcctaggagactcctcctattaaatgggaatttgttccaggtgcgctcttgtgcgcacattcttaacctcacagtccaagaaagcttagaacagacatctgatataattactagagtccgtgagatgattcagaatgtcaagttctcacaagaaaggtttgaaaagtttcaggatactgcaaaactgttgcagatggaccaaaaactgctagttcttgattctcctaataactggccgtctacatacttaatgtttgattctgcatgttactatcatgatgttctcatgcgccttgcagaacaggaagcacattatggtgcttttctcactgcgaaggagtgggccgatgtgaaagccctcactgaaatacttgatgcgctctatcataagatggagaagtttcctgtggaaaatccgactgcaaatctctattttaatgacatgtgtgaggtgcatgttcttttgaatacctggcgtaatagtccatctccTGTtgttgcacaagtggctgaccgaatgctgacaaaatttgaggggtactgggaTCttactagaccagtaatggcattcgcatctattctggatcctcgatataagatgaagtctgttgagtacttctgtagactcatatatgctgCtgatcaatttagagcaaagacaacaatagatgacattcggcagagttttaccaatttgtgcagtgaatatgaacagtcaggaaattcattcaagaatccatctgctctcttctactctgcaaccagtaattcttgcatgagttcgttgctagttcagacggtcatgcagatgacaaagcggcacgtggtgatgaacttatcgtgttaccaaaatagttga
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| Protein seq | MLEPTAMEVPITSSVNTAVVPVPVVHNPRARKLRSAVWQDFTKERRADGSCVAVCNHCKKQLTATSRSGTTHLRNHLAICTTTSTRRAGKRRKLIVRHDQIASLILEKLREWGIDRKLAAIVLDNCASGEIVARELLVVLQPRRLLLLNGNLFQVRSCAHILNLTVQESLEQTSDIITRVREMIQNVKFSQERFEKFQDTAKLLQMDQKLLVLDSPNNWPSTYLMFDSACYYHDVLMRLAEQEAHYGAFLTAKEWADVKALTEILDALYHKMEKFPVENPTANLYFNDMCEVHVLLNTWRNSPSPVVAQVADRMLTKFEGYWDLTRPVMAFASILDPRYKMKSVEYFCRLIYAADQFRAKTTIDDIRQSFTNLCSEYEQSGNSFKNPSALFYSATSNSCMSSLLVQTVMQMTKRHVVMNLSCYQNS |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0029500 | OsNaBo_01g0029500.01 | Chr01 | 29369622 | 29373869 | + | NAM | ||
| CDS seq | atgctggagccaacagctatggaagtgccgattactagctcagtgaacactgcagtggtgcctgtgcctgtggtgcacaatccacgggcacggaaattgcggtctgcagtttggcaggacttcactaaggaacggcgtgctgatggaagctgtgttgCTGTctgtaaccactgtaagaagcagctcacagctactagccggtcaggcaccacacacctacgcaaccacctcgcaatctgcaccaccacctccacgcgtcgtgctggtaagcgccggaagcttattgtgcgccatgatcagattgctagtctcattctagagaagttgcgtgagtggggtattgacaggaagctagctgccattgtactggacaactgcgcctctggtgagattgttgctagagagcttctcgtagttctgcagcctaggagactcctcctattaaatgggaatttgttccaggtgcgctcttgtgcgcacattcttaacctcacagtccaagaaagcttagaacagacatctgatataattactagagtccgtgagatgattcagaatgtcaagttctcacaagaaaggtttgaaaagtttcaggatactgcaaaactgttgcagatggaccaaaaactgctagttcttgattctcctaataactggccgtctacatacttaatgtttgattctgcatgttactatcatgatgttctcatgcgccttgcagaacaggaagcacattatggtgcttttctcactgcgaaggagtgggccgatgtgaaagccctcactgaaatacttgatgcgctctatcataagatggagaagtttcctgtggaaaatccgactgcaaatctctattttaatgacatgtgtgaggtgcatgttcttttgaatacctggcgtaatagtccatctccTGTtgttgcacaagtggctgaccgaatgctgacaaaatttgaggggtactgggaTCttactagaccagtaatggcattcgcatctattctggatcctcgatataagatgaagtctgttgagtacttctgtagactcatatatgctgCtgatcaatttagagcaaagacaacaatagatgacattcggcagagttttaccaatttgtgcagtgaatatgaacagtcaggaaattcattcaagaatccatctgctctcttctactctgcaaccagtaattcttgcatgagttcgttgctagttcagacggtcatgcagatgacaaagcggcacgtggtgatgaacttatcgtgttaccaaaatagttga
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| Protein seq | MLEPTAMEVPITSSVNTAVVPVPVVHNPRARKLRSAVWQDFTKERRADGSCVAVCNHCKKQLTATSRSGTTHLRNHLAICTTTSTRRAGKRRKLIVRHDQIASLILEKLREWGIDRKLAAIVLDNCASGEIVARELLVVLQPRRLLLLNGNLFQVRSCAHILNLTVQESLEQTSDIITRVREMIQNVKFSQERFEKFQDTAKLLQMDQKLLVLDSPNNWPSTYLMFDSACYYHDVLMRLAEQEAHYGAFLTAKEWADVKALTEILDALYHKMEKFPVENPTANLYFNDMCEVHVLLNTWRNSPSPVVAQVADRMLTKFEGYWDLTRPVMAFASILDPRYKMKSVEYFCRLIYAADQFRAKTTIDDIRQSFTNLCSEYEQSGNSFKNPSALFYSATSNSCMSSLLVQTVMQMTKRHVVMNLSCYQNS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.728323 | 3.914738 | 2.768139 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0698300 | RBH | 0.749589 | 0.867366 | 1.800701 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g50340 | RBH | 0.498844 | 0.574092 | 0.360728 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0698300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0030320 | RBH | 0.316504 | 4.307238 | 2.775368 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029941 | RBH | 0.143078 | 2.231475 | 1.414154 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0030290 | RBH | 2.456088 | 9.163258 | 11.191405 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0029231 | RBH | 3.004876 | 4.388119 | 5.437740 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0479800 | RBH | 4.7711085 | 8.7395205 | 5.3763935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028951 | RBH | 0.108553 | 0.431461 | 0.467108 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0029151 | RBH | 0.547319 | 1.816624 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0029381 | RBH | 0.223187 | 1.965974 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G029820 | RBH | 0.612182 | 0.622414 | 1.132290 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
