Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os01g50340 OGI:01077420 | 12/16 Nipponbare | IRGSP 1.0 | MSU Chr01:28892890-28897274
Gene Symbol -
DNA seq

GGAAATGGGTCGCGACCCAACCCACGCATTCCGCCCCCGGCTCCGATCTGCTAAGCCCCCTCGGATCGGGTTGCGGGTCCCCTCCTCCCCCCCGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAGGTCAGTCCCCGCTCCCTTCCTCGCCCTTCCCCCCATCCCCACGCTGCCTCCTCCGCCTCCTCCGTGGTGTTATCGGGTCCAGTAACCGGAGTCATAAACCCTAGCCGAGGGCGCGGTCTACGAGCTGCTTCGTGCCCGATTTCATGGGATTCGAGTGTGGGGATTGGACCCATGGAGGCTCCGATTTAGCTTGTATCTTCCAGATCGCTCCCTTGTATACGCTGATTGCGTCGTTGGTTTGGGACACTGGGGATTCGGGCGGGTTGAGCCGGTGAGGTGAGGGGATTTAATGAAGGTATTTTGTGCGTGTTTCATCAACCGGGCGGAATGGCAGCTTGCTGCATCTCCAGATGTTTTAATGGGATTTGTGGATTATCAGAGGCGTTCTGTAGTGTGAGTGTATGCTTAGGATATGAGCTTTTCCTGCCAATTTCTACTTGCGCGTGTATAGTTATAGCTTGTAGCTACAAGTAGAAGAGGGCATGGAGAAAATATAGTAACATCAAAGGTCACTCATTGCTTTCCAGTGTTTTGGACGCGTGAGAGTTTGTCTGGAAAAGAGAGTCAAAATGATGCTATTACCTTTTCTTTGTATGGATGTAGTGTCTTTATATATACTATATTGCTACTAGCGTTGCATGATGTGCTTGTTTGGATCTGCTGCAGTGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGGAAGTGCCGATTACTAGCTCAGTGAACACTGCAGTGGTGCCTGTGCCTGTGGTGCACAATCCACGGGCACGGAAATTGCGGTCTGCAGTTTGGCAGGACTTCACTAAGGAACGGCGTGCTGATGGAAGCTGTGTTGCTGTCTGTAACCACTGTAAGAAGCAGCTCACAGCTACTAGCCGGTCAGGCACCACACACCTACGCAACCACCTCGCAATCTGCACCACCACCTCCACGCGTCGTGCTGGTAAGCGCCGGAAGCTTATTGTGCGCCGTATTCTCCACAACAAAACCTCCACTGATGGACAGTCTGGTGACGGACATGCTTCGGGAGAGGACCATGACAACGATGGCACGCATTTTGACCAAGAACTCAGTCGGCGAGATCTTGCCCATATGATTGTCCAGCATGGGTACCGGTTTTCAATAGTGGATGATGTGGGCTTCCAAAAGTTTGTCAAGAACCTCCAGCCACGGTTTAGGATGGTGTCATATGAAACAGTGAGGGCTGATAGCATGACAATTTATGAAAGCGAGAAGCTGAAGCTGCAGGATGCTCTGCTCAAGATCCCTTGCCGACTTAGTATCTCAGTTGATATGTGGCGATCGAATACACAGATGGACTTCTTGTGTTTGACCTGTCACTATATTGACCATGCCAATGATGAGTGGAAAGTTAGGAAAAAAATTCTGAACTTTGTGCATGTGGAGGCACCTTTTACAGATGATCAGATTGCTAGTCTCATTCTAGAGAAGTTGCGTGAGTGGGGTATTGACAGGAAGCTAGCTGCCATTGTACTGGACAACTGCGCCTCTGGTGAGATTGTTGCTAGAGAGCTTCTCGTAGTTCTGCAGCCTAGGAGACTCCTCCTATTAAATGGGAATTTGTTCCAGGTGCGCTCTTGTGCGCACATTCTTAACCTCACAGTCCAAGAAAGCTTAGAACAGACATCTGATATAATTACTAGAGTCCGTGAGATGATTCAGAATGTCAAGTTCTCACAAGAAAGGTTCGAAAAGTTTCAGGATACTGCAAAACTGTTGCAGATGGACCAAAAACTGCTAGTTCTTGATTCTCCTAATAACTGGCCGTCTACATACTTAATGTTTGATTCTGCATGTTACTATCATGATGTTCTCATGCGCCTTGCAGAACAGGAAGCACATTATGGTGCTTTTCTCACTGCGAAGGAGTGGGCCGATGTGAAAGCCCTCACTGAAATACTTGATGCGCTCTATCATAAGATGGAGAAGTTTCCTGTGGAAAATCCGACTGCAAATCTCTATTTTAATGACATGTGTGAGGTGCATGTTCTTTTGAATACCTGGCGTAATAGTCCATCTCCTGTTGTTGCACAAGTGGCTGACCGAATGCTGACAAAATTTGAGGGGTACTGGGATCTTACTAGACCAGTAATGGCATTCGCATCTATTCTGGATCCTCGATATAAGATGAAGTCTGTTGAGTACTTCTGTAGACTCATTTATGCTGCTGATCAATTTAGAGCAAAGACAACAATAGATGACATTCGGCAGAGTTTTACCAATTTGTGCAGTGAATATGAACAGTCAGGAAATTCATTCAAGAATCCATCTGCTCTCTTCTACTCTGCAACCAGTAATTCTTGCATGAGTTCGGTATACAGCAATGGTGATGATTTTAAGACCTTCTCCCGTATCACATTATCTGATGCTCGAAGGGGACTTGATCAATATATACAGGAGACGTCATCAGGCCAATCCTTTAAGTCTGACTTAGACATGTACCTTGAGGAACCGGTCTATCGCCAAAAGGAAGGGCATTTAGATAATTTTGACATCCTGGGATGGTGGAAGTCCTTTGCAGCAAAGTATCCTGTCCTTTCTCAAATGGCTCGTGATATTTTAGCTGTCCCTGTATCTATCATCCCATTGGACAGTGATGCTCGGACATTAAATGAGTATCTCAGTACCATGGACCCTTCAACAGTGCAGGGATTGGTATGTGCGCAAGATTGGTTGCGGGAAGATACAGAAGGTACCACTAGGTCACACCTTCTACAGTAAGTTATATTTCTGCCGGGCATGTTAATCTGAATTATTTGTTTCACTTGTGCTTTTGCAGTTGCTAGTTCAGACGGTCATGCAGATGACAAAGCGGCACGTGGTGATGAACTTATCGTGTTACCAAAATAGGTAATATATTGGACGCAGATCACTTGTTTCAGTTTGCTTTGATACTTTTATCTTTTCCCAGATGTGCATTCATGTGACGTTCTCATGCGGAAAGTTTGGGAGGAGCTTCAATATTTATGCTTACATATTCAAGTGTTTGACTTTCTCTGTTTGCTCATGTTTTCAAAACCTTGAATACATTGAAGATCAAATCTATATCTATACTCTGGTGCAAAGATTATGTTCAATAATATAATTTATCCAACAGCAGTGCTTGGGCTTACCCTGAGCAGAATATCCCTACTTTCAAATAGTAGTATGCGTTGGAAGTTTGAGTTACATTTTTCTCGAACACCAGTTCAAGTTACATGACACCATTGATTGAGAAGATCATGTGCACAGATGTTGCTAAGCTTACAAACTGCCTAATTGAATTGCTCATGAATTCTTGTTTGTACAATTTCATAAATGCATAAGGGGAATAAATAAAAACATTCTCTAAAAAGAAATGGCTACGTGAAGCACCATTTGCTAGAACTGAAACCTGTTGACCATAGTATTTGTACTCTTAGGCTTGTAGCCTGCTAATTTACTCACGGCTTCAGATCTCGATATTAGCTAATACTCCGTATTACTTAAGTACTTCCTTCTATACGTTTTCATATAAACTTTCTTTACTCTCCATTTGCAATCAACTTAGTGTGATTTTTTTTAAAACCCGTACAGCTAAAAAAATGAAGAAAAATAGCACACTGTATATTTCTTTTCTTCACTAGACTACTGGAGTACAACAATCGGAGTATCCGATCCACAGTAATTCACCACCGAAATGGTAGTGTTTTAGGTGCAATTTTCTTCGTTGGTGCAGGTTGCACAATGGTATTAACTTTAGCCAATTGCGGTTGTTATGCTTGTGGCCTGATACTTGACGAATTGGTTAAGTTAAAAATATGTTACTTCTTTTATTGTATTGGGCACCAGGATTATTACATCTTCATTTTTACTTGTCTGCAGTTGAGACTTCTGATTGATGGCTCCTGAGTCCTGAGGAGACCAAGGAGGCGAGGACGCAAGTAACTGCATTATTTATGTTCAACAGTCCAATTTCCAGGCTTCCAGCTACACCCCTGTAAATGTATCGTTCTAGTTCTAGATCTGTTTGTACAATGAAGTCGTAGGTACCTCCAAGAAGGTAGTATCAATTTAGGCAATTGACTCTGCATTAATGACTTAATGTGTATTATGCTGCTAAGCTAAGTTATCTCCATCGTAGCTAAGTTATCTCCATCGTATTTCTTAAGAATATGCAGTTATGCAGGCAACACTCCTGAAGTGGATAACTTTGAATCCAACATTTCAAATGTGACAAAATTTATTCTACTATCAAA

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CDS seq

ATGCTGGAGCCAACAGCTATGGAAGTGCCGATTACTAGCTCAGTGAACACTGCAGTGGTGCCTGTGCCTGTGGTGCACAATCCACGGGCACGGAAATTGCGGTCTGCAGTTTGGCAGGACTTCACTAAGGAACGGCGTGCTGATGGAAGCTGTGTTGCTGTCTGTAACCACTGTAAGAAGCAGCTCACAGCTACTAGCCGGTCAGGCACCACACACCTACGCAACCACCTCGCAATCTGCACCACCACCTCCACGCGTCGTGCTGGTAAGCGCCGGAAGCTTATTGTGCGCCGTATTCTCCACAACAAAACCTCCACTGATGGACAGTCTGGTGACGGACATGCTTCGGGAGAGGACCATGACAACGATGGCACGCATTTTGACCAAGAACTCAGTCGGCGAGATCTTGCCCATATGATTGTCCAGCATGGGTACCGGTTTTCAATAGTGGATGATGTGGGCTTCCAAAAGTTTGTCAAGAACCTCCAGCCACGGTTTAGGATGGTGTCATATGAAACAGTGAGGGCTGATAGCATGACAATTTATGAAAGCGAGAAGCTGAAGCTGCAGGATGCTCTGCTCAAGATCCCTTGCCGACTTAGTATCTCAGTTGATATGTGGCGATCGAATACACAGATGGACTTCTTGTGTTTGACCTGTCACTATATTGACCATGCCAATGATGAGTGGAAAGTTAGGAAAAAAATTCTGAACTTTGTGCATGTGGAGGCACCTTTTACAGATGATCAGATTGCTAGTCTCATTCTAGAGAAGTTGCGTGAGTGGGGTATTGACAGGAAGCTAGCTGCCATTGTACTGGACAACTGCGCCTCTGGTGAGATTGTTGCTAGAGAGCTTCTCGTAGTTCTGCAGCCTAGGAGACTCCTCCTATTAAATGGGAATTTGTTCCAGGTGCGCTCTTGTGCGCACATTCTTAACCTCACAGTCCAAGAAAGCTTAGAACAGACATCTGATATAATTACTAGAGTCCGTGAGATGATTCAGAATGTCAAGTTCTCACAAGAAAGGTTCGAAAAGTTTCAGGATACTGCAAAACTGTTGCAGATGGACCAAAAACTGCTAGTTCTTGATTCTCCTAATAACTGGCCGTCTACATACTTAATGTTTGATTCTGCATGTTACTATCATGATGTTCTCATGCGCCTTGCAGAACAGGAAGCACATTATGGTGCTTTTCTCACTGCGAAGGAGTGGGCCGATGTGAAAGCCCTCACTGAAATACTTGATGCGCTCTATCATAAGATGGAGAAGTTTCCTGTGGAAAATCCGACTGCAAATCTCTATTTTAATGACATGTGTGAGGTGCATGTTCTTTTGAATACCTGGCGTAATAGTCCATCTCCTGTTGTTGCACAAGTGGCTGACCGAATGCTGACAAAATTTGAGGGGTACTGGGATCTTACTAGACCAGTAATGGCATTCGCATCTATTCTGGATCCTCGATATAAGATGAAGTCTGTTGAGTACTTCTGTAGACTCATTTATGCTGCTGATCAATTTAGAGCAAAGACAACAATAGATGACATTCGGCAGAGTTTTACCAATTTGTGCAGTGAATATGAACAGTCAGGAAATTCATTCAAGAATCCATCTGCTCTCTTCTACTCTGCAACCAGTAATTCTTGCATGAGTTCGGTATACAGCAATGGTGATGATTTTAAGACCTTCTCCCGTATCACATTATCTGATGCTCGAAGGGGACTTGATCAATATATACAGGAGACGTCATCAGGCCAATCCTTTAAGTCTGACTTAGACATGTACCTTGAGGAACCGGTCTATCGCCAAAAGGAAGGGCATTTAGATAATTTTGACATCCTGGGATGGTGGAAGTCCTTTGCAGCAAAGTATCCTGTCCTTTCTCAAATGGCTCGTGATATTTTAGCTGTCCCTGTATCTATCATCCCATTGGACAGTGATGCTCGGACATTAAATGAGTATCTCAGTACCATGGACCCTTCAACAGTGCAGGGATTGGTATGTGCGCAAGATTGGTTGCGGGAAGATACAGAAGTTGCTAGTTCAGACGGTCATGCAGATGACAAAGCGGCACGTGGTGATGAACTTATCGTGTTACCAAAATAG

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Protein seq

MLEPTAMEVPITSSVNTAVVPVPVVHNPRARKLRSAVWQDFTKERRADGSCVAVCNHCKKQLTATSRSGTTHLRNHLAICTTTSTRRAGKRRKLIVRRILHNKTSTDGQSGDGHASGEDHDNDGTHFDQELSRRDLAHMIVQHGYRFSIVDDVGFQKFVKNLQPRFRMVSYETVRADSMTIYESEKLKLQDALLKIPCRLSISVDMWRSNTQMDFLCLTCHYIDHANDEWKVRKKILNFVHVEAPFTDDQIASLILEKLREWGIDRKLAAIVLDNCASGEIVARELLVVLQPRRLLLLNGNLFQVRSCAHILNLTVQESLEQTSDIITRVREMIQNVKFSQERFEKFQDTAKLLQMDQKLLVLDSPNNWPSTYLMFDSACYYHDVLMRLAEQEAHYGAFLTAKEWADVKALTEILDALYHKMEKFPVENPTANLYFNDMCEVHVLLNTWRNSPSPVVAQVADRMLTKFEGYWDLTRPVMAFASILDPRYKMKSVEYFCRLIYAADQFRAKTTIDDIRQSFTNLCSEYEQSGNSFKNPSALFYSATSNSCMSSVYSNGDDFKTFSRITLSDARRGLDQYIQETSSGQSFKSDLDMYLEEPVYRQKEGHLDNFDILGWWKSFAAKYPVLSQMARDILAVPVSIIPLDSDARTLNEYLSTMDPSTVQGLVCAQDWLREDTEVASSDGHADDKAARGDELIVLPK

Function Zinc finger BED domain-containing protein RICESLEEPER 1 [UniProtKB/Swiss-Prot:B9FJG3]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os01g50340 LOC_Os01g50340.1 Chr01 28892890 28897274 + MSU_osa1r7
CDS seq

ATGCTGGAGCCAACAGCTATGGAAGTGCCGATTACTAGCTCAGTGAACACTGCAGTGGTGCCTGTGCCTGTGGTGCACAATCCACGGGCACGGAAATTGCGGTCTGCAGTTTGGCAGGACTTCACTAAGGAACGGCGTGCTGATGGAAGCTGTGTTGCTGTCTGTAACCACTGTAAGAAGCAGCTCACAGCTACTAGCCGGTCAGGCACCACACACCTACGCAACCACCTCGCAATCTGCACCACCACCTCCACGCGTCGTGCTGGTAAGCGCCGGAAGCTTATTGTGCGCCGTATTCTCCACAACAAAACCTCCACTGATGGACAGTCTGGTGACGGACATGCTTCGGGAGAGGACCATGACAACGATGGCACGCATTTTGACCAAGAACTCAGTCGGCGAGATCTTGCCCATATGATTGTCCAGCATGGGTACCGGTTTTCAATAGTGGATGATGTGGGCTTCCAAAAGTTTGTCAAGAACCTCCAGCCACGGTTTAGGATGGTGTCATATGAAACAGTGAGGGCTGATAGCATGACAATTTATGAAAGCGAGAAGCTGAAGCTGCAGGATGCTCTGCTCAAGATCCCTTGCCGACTTAGTATCTCAGTTGATATGTGGCGATCGAATACACAGATGGACTTCTTGTGTTTGACCTGTCACTATATTGACCATGCCAATGATGAGTGGAAAGTTAGGAAAAAAATTCTGAACTTTGTGCATGTGGAGGCACCTTTTACAGATGATCAGATTGCTAGTCTCATTCTAGAGAAGTTGCGTGAGTGGGGTATTGACAGGAAGCTAGCTGCCATTGTACTGGACAACTGCGCCTCTGGTGAGATTGTTGCTAGAGAGCTTCTCGTAGTTCTGCAGCCTAGGAGACTCCTCCTATTAAATGGGAATTTGTTCCAGGTGCGCTCTTGTGCGCACATTCTTAACCTCACAGTCCAAGAAAGCTTAGAACAGACATCTGATATAATTACTAGAGTCCGTGAGATGATTCAGAATGTCAAGTTCTCACAAGAAAGGTTCGAAAAGTTTCAGGATACTGCAAAACTGTTGCAGATGGACCAAAAACTGCTAGTTCTTGATTCTCCTAATAACTGGCCGTCTACATACTTAATGTTTGATTCTGCATGTTACTATCATGATGTTCTCATGCGCCTTGCAGAACAGGAAGCACATTATGGTGCTTTTCTCACTGCGAAGGAGTGGGCCGATGTGAAAGCCCTCACTGAAATACTTGATGCGCTCTATCATAAGATGGAGAAGTTTCCTGTGGAAAATCCGACTGCAAATCTCTATTTTAATGACATGTGTGAGGTGCATGTTCTTTTGAATACCTGGCGTAATAGTCCATCTCCTGTTGTTGCACAAGTGGCTGACCGAATGCTGACAAAATTTGAGGGGTACTGGGATCTTACTAGACCAGTAATGGCATTCGCATCTATTCTGGATCCTCGATATAAGATGAAGTCTGTTGAGTACTTCTGTAGACTCATTTATGCTGCTGATCAATTTAGAGCAAAGACAACAATAGATGACATTCGGCAGAGTTTTACCAATTTGTGCAGTGAATATGAACAGTCAGGAAATTCATTCAAGAATCCATCTGCTCTCTTCTACTCTGCAACCAGTAATTCTTGCATGAGTTCGGTATACAGCAATGGTGATGATTTTAAGACCTTCTCCCGTATCACATTATCTGATGCTCGAAGGGGACTTGATCAATATATACAGGAGACGTCATCAGGCCAATCCTTTAAGTCTGACTTAGACATGTACCTTGAGGAACCGGTCTATCGCCAAAAGGAAGGGCATTTAGATAATTTTGACATCCTGGGATGGTGGAAGTCCTTTGCAGCAAAGTATCCTGTCCTTTCTCAAATGGCTCGTGATATTTTAGCTGTCCCTGTATCTATCATCCCATTGGACAGTGATGCTCGGACATTAAATGAGTATCTCAGTACCATGGACCCTTCAACAGTGCAGGGATTGGTATGTGCGCAAGATTGGTTGCGGGAAGATACAGAAGTTGCTAGTTCAGACGGTCATGCAGATGACAAAGCGGCACGTGGTGATGAACTTATCGTGTTACCAAAATAG

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Protein seq

MLEPTAMEVPITSSVNTAVVPVPVVHNPRARKLRSAVWQDFTKERRADGSCVAVCNHCKKQLTATSRSGTTHLRNHLAICTTTSTRRAGKRRKLIVRRILHNKTSTDGQSGDGHASGEDHDNDGTHFDQELSRRDLAHMIVQHGYRFSIVDDVGFQKFVKNLQPRFRMVSYETVRADSMTIYESEKLKLQDALLKIPCRLSISVDMWRSNTQMDFLCLTCHYIDHANDEWKVRKKILNFVHVEAPFTDDQIASLILEKLREWGIDRKLAAIVLDNCASGEIVARELLVVLQPRRLLLLNGNLFQVRSCAHILNLTVQESLEQTSDIITRVREMIQNVKFSQERFEKFQDTAKLLQMDQKLLVLDSPNNWPSTYLMFDSACYYHDVLMRLAEQEAHYGAFLTAKEWADVKALTEILDALYHKMEKFPVENPTANLYFNDMCEVHVLLNTWRNSPSPVVAQVADRMLTKFEGYWDLTRPVMAFASILDPRYKMKSVEYFCRLIYAADQFRAKTTIDDIRQSFTNLCSEYEQSGNSFKNPSALFYSATSNSCMSSVYSNGDDFKTFSRITLSDARRGLDQYIQETSSGQSFKSDLDMYLEEPVYRQKEGHLDNFDILGWWKSFAAKYPVLSQMARDILAVPVSIIPLDSDARTLNEYLSTMDPSTVQGLVCAQDWLREDTEVASSDGHADDKAARGDELIVLPK

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.498844 0.574092 0.360728

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0698300 RBH 0.749589 0.867366 1.800701
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db Os01g0698300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0030320 RBH 0.316504 4.307238 2.775368
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0030290 RBH 2.456088 9.163258 11.191405
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0479800 RBH 4.7711085 8.7395205 5.3763935
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0028951 RBH 0.108553 0.431461 0.467108
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0492800 SBH 0.2501715 1.59472 1.1322495
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G029820 RBH 0.612182 0.622414 1.132290
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0029500 RBH 0.728323 3.914738 2.768139
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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