Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
LOC_Os01g50340 | OGI:01077420 | 12/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:28892890-28897274 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | GGAAATGGGTCGCGACCCAACCCACGCATTCCGCCCCCGGCTCCGATCTGCTAAGCCCCCTCGGATCGGGTTGCGGGTCCCCTCCTCCCCCCCGACCCACCACCGCTCGCCGCCGGCCGCCTCCGACGAGGTCAGTCCCCGCTCCCTTCCTCGCCCTTCCCCCCATCCCCACGCTGCCTCCTCCGCCTCCTCCGTGGTGTTATCGGGTCCAGTAACCGGAGTCATAAACCCTAGCCGAGGGCGCGGTCTACGAGCTGCTTCGTGCCCGATTTCATGGGATTCGAGTGTGGGGATTGGACCCATGGAGGCTCCGATTTAGCTTGTATCTTCCAGATCGCTCCCTTGTATACGCTGATTGCGTCGTTGGTTTGGGACACTGGGGATTCGGGCGGGTTGAGCCGGTGAGGTGAGGGGATTTAATGAAGGTATTTTGTGCGTGTTTCATCAACCGGGCGGAATGGCAGCTTGCTGCATCTCCAGATGTTTTAATGGGATTTGTGGATTATCAGAGGCGTTCTGTAGTGTGAGTGTATGCTTAGGATATGAGCTTTTCCTGCCAATTTCTACTTGCGCGTGTATAGTTATAGCTTGTAGCTACAAGTAGAAGAGGGCATGGAGAAAATATAGTAACATCAAAGGTCACTCATTGCTTTCCAGTGTTTTGGACGCGTGAGAGTTTGTCTGGAAAAGAGAGTCAAAATGATGCTATTACCTTTTCTTTGTATGGATGTAGTGTCTTTATATATACTATATTGCTACTAGCGTTGCATGATGTGCTTGTTTGGATCTGCTGCAGTGGGCGATCATATTTAGATACAAGATAGCATGCTGGAGCCAACAGCTATGGAAGTGCCGATTACTAGCTCAGTGAACACTGCAGTGGTGCCTGTGCCTGTGGTGCACAATCCACGGGCACGGAAATTGCGGTCTGCAGTTTGGCAGGACTTCACTAAGGAACGGCGTGCTGATGGAAGCTGTGTTGCTGTCTGTAACCACTGTAAGAAGCAGCTCACAGCTACTAGCCGGTCAGGCACCACACACCTACGCAACCACCTCGCAATCTGCACCACCACCTCCACGCGTCGTGCTGGTAAGCGCCGGAAGCTTATTGTGCGCCGTATTCTCCACAACAAAACCTCCACTGATGGACAGTCTGGTGACGGACATGCTTCGGGAGAGGACCATGACAACGATGGCACGCATTTTGACCAAGAACTCAGTCGGCGAGATCTTGCCCATATGATTGTCCAGCATGGGTACCGGTTTTCAATAGTGGATGATGTGGGCTTCCAAAAGTTTGTCAAGAACCTCCAGCCACGGTTTAGGATGGTGTCATATGAAACAGTGAGGGCTGATAGCATGACAATTTATGAAAGCGAGAAGCTGAAGCTGCAGGATGCTCTGCTCAAGATCCCTTGCCGACTTAGTATCTCAGTTGATATGTGGCGATCGAATACACAGATGGACTTCTTGTGTTTGACCTGTCACTATATTGACCATGCCAATGATGAGTGGAAAGTTAGGAAAAAAATTCTGAACTTTGTGCATGTGGAGGCACCTTTTACAGATGATCAGATTGCTAGTCTCATTCTAGAGAAGTTGCGTGAGTGGGGTATTGACAGGAAGCTAGCTGCCATTGTACTGGACAACTGCGCCTCTGGTGAGATTGTTGCTAGAGAGCTTCTCGTAGTTCTGCAGCCTAGGAGACTCCTCCTATTAAATGGGAATTTGTTCCAGGTGCGCTCTTGTGCGCACATTCTTAACCTCACAGTCCAAGAAAGCTTAGAACAGACATCTGATATAATTACTAGAGTCCGTGAGATGATTCAGAATGTCAAGTTCTCACAAGAAAGGTTCGAAAAGTTTCAGGATACTGCAAAACTGTTGCAGATGGACCAAAAACTGCTAGTTCTTGATTCTCCTAATAACTGGCCGTCTACATACTTAATGTTTGATTCTGCATGTTACTATCATGATGTTCTCATGCGCCTTGCAGAACAGGAAGCACATTATGGTGCTTTTCTCACTGCGAAGGAGTGGGCCGATGTGAAAGCCCTCACTGAAATACTTGATGCGCTCTATCATAAGATGGAGAAGTTTCCTGTGGAAAATCCGACTGCAAATCTCTATTTTAATGACATGTGTGAGGTGCATGTTCTTTTGAATACCTGGCGTAATAGTCCATCTCCTGTTGTTGCACAAGTGGCTGACCGAATGCTGACAAAATTTGAGGGGTACTGGGATCTTACTAGACCAGTAATGGCATTCGCATCTATTCTGGATCCTCGATATAAGATGAAGTCTGTTGAGTACTTCTGTAGACTCATTTATGCTGCTGATCAATTTAGAGCAAAGACAACAATAGATGACATTCGGCAGAGTTTTACCAATTTGTGCAGTGAATATGAACAGTCAGGAAATTCATTCAAGAATCCATCTGCTCTCTTCTACTCTGCAACCAGTAATTCTTGCATGAGTTCGGTATACAGCAATGGTGATGATTTTAAGACCTTCTCCCGTATCACATTATCTGATGCTCGAAGGGGACTTGATCAATATATACAGGAGACGTCATCAGGCCAATCCTTTAAGTCTGACTTAGACATGTACCTTGAGGAACCGGTCTATCGCCAAAAGGAAGGGCATTTAGATAATTTTGACATCCTGGGATGGTGGAAGTCCTTTGCAGCAAAGTATCCTGTCCTTTCTCAAATGGCTCGTGATATTTTAGCTGTCCCTGTATCTATCATCCCATTGGACAGTGATGCTCGGACATTAAATGAGTATCTCAGTACCATGGACCCTTCAACAGTGCAGGGATTGGTATGTGCGCAAGATTGGTTGCGGGAAGATACAGAAGGTACCACTAGGTCACACCTTCTACAGTAAGTTATATTTCTGCCGGGCATGTTAATCTGAATTATTTGTTTCACTTGTGCTTTTGCAGTTGCTAGTTCAGACGGTCATGCAGATGACAAAGCGGCACGTGGTGATGAACTTATCGTGTTACCAAAATAGGTAATATATTGGACGCAGATCACTTGTTTCAGTTTGCTTTGATACTTTTATCTTTTCCCAGATGTGCATTCATGTGACGTTCTCATGCGGAAAGTTTGGGAGGAGCTTCAATATTTATGCTTACATATTCAAGTGTTTGACTTTCTCTGTTTGCTCATGTTTTCAAAACCTTGAATACATTGAAGATCAAATCTATATCTATACTCTGGTGCAAAGATTATGTTCAATAATATAATTTATCCAACAGCAGTGCTTGGGCTTACCCTGAGCAGAATATCCCTACTTTCAAATAGTAGTATGCGTTGGAAGTTTGAGTTACATTTTTCTCGAACACCAGTTCAAGTTACATGACACCATTGATTGAGAAGATCATGTGCACAGATGTTGCTAAGCTTACAAACTGCCTAATTGAATTGCTCATGAATTCTTGTTTGTACAATTTCATAAATGCATAAGGGGAATAAATAAAAACATTCTCTAAAAAGAAATGGCTACGTGAAGCACCATTTGCTAGAACTGAAACCTGTTGACCATAGTATTTGTACTCTTAGGCTTGTAGCCTGCTAATTTACTCACGGCTTCAGATCTCGATATTAGCTAATACTCCGTATTACTTAAGTACTTCCTTCTATACGTTTTCATATAAACTTTCTTTACTCTCCATTTGCAATCAACTTAGTGTGATTTTTTTTAAAACCCGTACAGCTAAAAAAATGAAGAAAAATAGCACACTGTATATTTCTTTTCTTCACTAGACTACTGGAGTACAACAATCGGAGTATCCGATCCACAGTAATTCACCACCGAAATGGTAGTGTTTTAGGTGCAATTTTCTTCGTTGGTGCAGGTTGCACAATGGTATTAACTTTAGCCAATTGCGGTTGTTATGCTTGTGGCCTGATACTTGACGAATTGGTTAAGTTAAAAATATGTTACTTCTTTTATTGTATTGGGCACCAGGATTATTACATCTTCATTTTTACTTGTCTGCAGTTGAGACTTCTGATTGATGGCTCCTGAGTCCTGAGGAGACCAAGGAGGCGAGGACGCAAGTAACTGCATTATTTATGTTCAACAGTCCAATTTCCAGGCTTCCAGCTACACCCCTGTAAATGTATCGTTCTAGTTCTAGATCTGTTTGTACAATGAAGTCGTAGGTACCTCCAAGAAGGTAGTATCAATTTAGGCAATTGACTCTGCATTAATGACTTAATGTGTATTATGCTGCTAAGCTAAGTTATCTCCATCGTAGCTAAGTTATCTCCATCGTATTTCTTAAGAATATGCAGTTATGCAGGCAACACTCCTGAAGTGGATAACTTTGAATCCAACATTTCAAATGTGACAAAATTTATTCTACTATCAAA
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CDS seq | ATGCTGGAGCCAACAGCTATGGAAGTGCCGATTACTAGCTCAGTGAACACTGCAGTGGTGCCTGTGCCTGTGGTGCACAATCCACGGGCACGGAAATTGCGGTCTGCAGTTTGGCAGGACTTCACTAAGGAACGGCGTGCTGATGGAAGCTGTGTTGCTGTCTGTAACCACTGTAAGAAGCAGCTCACAGCTACTAGCCGGTCAGGCACCACACACCTACGCAACCACCTCGCAATCTGCACCACCACCTCCACGCGTCGTGCTGGTAAGCGCCGGAAGCTTATTGTGCGCCGTATTCTCCACAACAAAACCTCCACTGATGGACAGTCTGGTGACGGACATGCTTCGGGAGAGGACCATGACAACGATGGCACGCATTTTGACCAAGAACTCAGTCGGCGAGATCTTGCCCATATGATTGTCCAGCATGGGTACCGGTTTTCAATAGTGGATGATGTGGGCTTCCAAAAGTTTGTCAAGAACCTCCAGCCACGGTTTAGGATGGTGTCATATGAAACAGTGAGGGCTGATAGCATGACAATTTATGAAAGCGAGAAGCTGAAGCTGCAGGATGCTCTGCTCAAGATCCCTTGCCGACTTAGTATCTCAGTTGATATGTGGCGATCGAATACACAGATGGACTTCTTGTGTTTGACCTGTCACTATATTGACCATGCCAATGATGAGTGGAAAGTTAGGAAAAAAATTCTGAACTTTGTGCATGTGGAGGCACCTTTTACAGATGATCAGATTGCTAGTCTCATTCTAGAGAAGTTGCGTGAGTGGGGTATTGACAGGAAGCTAGCTGCCATTGTACTGGACAACTGCGCCTCTGGTGAGATTGTTGCTAGAGAGCTTCTCGTAGTTCTGCAGCCTAGGAGACTCCTCCTATTAAATGGGAATTTGTTCCAGGTGCGCTCTTGTGCGCACATTCTTAACCTCACAGTCCAAGAAAGCTTAGAACAGACATCTGATATAATTACTAGAGTCCGTGAGATGATTCAGAATGTCAAGTTCTCACAAGAAAGGTTCGAAAAGTTTCAGGATACTGCAAAACTGTTGCAGATGGACCAAAAACTGCTAGTTCTTGATTCTCCTAATAACTGGCCGTCTACATACTTAATGTTTGATTCTGCATGTTACTATCATGATGTTCTCATGCGCCTTGCAGAACAGGAAGCACATTATGGTGCTTTTCTCACTGCGAAGGAGTGGGCCGATGTGAAAGCCCTCACTGAAATACTTGATGCGCTCTATCATAAGATGGAGAAGTTTCCTGTGGAAAATCCGACTGCAAATCTCTATTTTAATGACATGTGTGAGGTGCATGTTCTTTTGAATACCTGGCGTAATAGTCCATCTCCTGTTGTTGCACAAGTGGCTGACCGAATGCTGACAAAATTTGAGGGGTACTGGGATCTTACTAGACCAGTAATGGCATTCGCATCTATTCTGGATCCTCGATATAAGATGAAGTCTGTTGAGTACTTCTGTAGACTCATTTATGCTGCTGATCAATTTAGAGCAAAGACAACAATAGATGACATTCGGCAGAGTTTTACCAATTTGTGCAGTGAATATGAACAGTCAGGAAATTCATTCAAGAATCCATCTGCTCTCTTCTACTCTGCAACCAGTAATTCTTGCATGAGTTCGGTATACAGCAATGGTGATGATTTTAAGACCTTCTCCCGTATCACATTATCTGATGCTCGAAGGGGACTTGATCAATATATACAGGAGACGTCATCAGGCCAATCCTTTAAGTCTGACTTAGACATGTACCTTGAGGAACCGGTCTATCGCCAAAAGGAAGGGCATTTAGATAATTTTGACATCCTGGGATGGTGGAAGTCCTTTGCAGCAAAGTATCCTGTCCTTTCTCAAATGGCTCGTGATATTTTAGCTGTCCCTGTATCTATCATCCCATTGGACAGTGATGCTCGGACATTAAATGAGTATCTCAGTACCATGGACCCTTCAACAGTGCAGGGATTGGTATGTGCGCAAGATTGGTTGCGGGAAGATACAGAAGTTGCTAGTTCAGACGGTCATGCAGATGACAAAGCGGCACGTGGTGATGAACTTATCGTGTTACCAAAATAG
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Protein seq | MLEPTAMEVPITSSVNTAVVPVPVVHNPRARKLRSAVWQDFTKERRADGSCVAVCNHCKKQLTATSRSGTTHLRNHLAICTTTSTRRAGKRRKLIVRRILHNKTSTDGQSGDGHASGEDHDNDGTHFDQELSRRDLAHMIVQHGYRFSIVDDVGFQKFVKNLQPRFRMVSYETVRADSMTIYESEKLKLQDALLKIPCRLSISVDMWRSNTQMDFLCLTCHYIDHANDEWKVRKKILNFVHVEAPFTDDQIASLILEKLREWGIDRKLAAIVLDNCASGEIVARELLVVLQPRRLLLLNGNLFQVRSCAHILNLTVQESLEQTSDIITRVREMIQNVKFSQERFEKFQDTAKLLQMDQKLLVLDSPNNWPSTYLMFDSACYYHDVLMRLAEQEAHYGAFLTAKEWADVKALTEILDALYHKMEKFPVENPTANLYFNDMCEVHVLLNTWRNSPSPVVAQVADRMLTKFEGYWDLTRPVMAFASILDPRYKMKSVEYFCRLIYAADQFRAKTTIDDIRQSFTNLCSEYEQSGNSFKNPSALFYSATSNSCMSSVYSNGDDFKTFSRITLSDARRGLDQYIQETSSGQSFKSDLDMYLEEPVYRQKEGHLDNFDILGWWKSFAAKYPVLSQMARDILAVPVSIIPLDSDARTLNEYLSTMDPSTVQGLVCAQDWLREDTEVASSDGHADDKAARGDELIVLPK |
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Function | Zinc finger BED domain-containing protein RICESLEEPER 1 [UniProtKB/Swiss-Prot:B9FJG3] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
LOC_Os01g50340 | LOC_Os01g50340.1 | Chr01 | 28892890 | 28897274 | + | MSU_osa1r7 | ||
CDS seq | ATGCTGGAGCCAACAGCTATGGAAGTGCCGATTACTAGCTCAGTGAACACTGCAGTGGTGCCTGTGCCTGTGGTGCACAATCCACGGGCACGGAAATTGCGGTCTGCAGTTTGGCAGGACTTCACTAAGGAACGGCGTGCTGATGGAAGCTGTGTTGCTGTCTGTAACCACTGTAAGAAGCAGCTCACAGCTACTAGCCGGTCAGGCACCACACACCTACGCAACCACCTCGCAATCTGCACCACCACCTCCACGCGTCGTGCTGGTAAGCGCCGGAAGCTTATTGTGCGCCGTATTCTCCACAACAAAACCTCCACTGATGGACAGTCTGGTGACGGACATGCTTCGGGAGAGGACCATGACAACGATGGCACGCATTTTGACCAAGAACTCAGTCGGCGAGATCTTGCCCATATGATTGTCCAGCATGGGTACCGGTTTTCAATAGTGGATGATGTGGGCTTCCAAAAGTTTGTCAAGAACCTCCAGCCACGGTTTAGGATGGTGTCATATGAAACAGTGAGGGCTGATAGCATGACAATTTATGAAAGCGAGAAGCTGAAGCTGCAGGATGCTCTGCTCAAGATCCCTTGCCGACTTAGTATCTCAGTTGATATGTGGCGATCGAATACACAGATGGACTTCTTGTGTTTGACCTGTCACTATATTGACCATGCCAATGATGAGTGGAAAGTTAGGAAAAAAATTCTGAACTTTGTGCATGTGGAGGCACCTTTTACAGATGATCAGATTGCTAGTCTCATTCTAGAGAAGTTGCGTGAGTGGGGTATTGACAGGAAGCTAGCTGCCATTGTACTGGACAACTGCGCCTCTGGTGAGATTGTTGCTAGAGAGCTTCTCGTAGTTCTGCAGCCTAGGAGACTCCTCCTATTAAATGGGAATTTGTTCCAGGTGCGCTCTTGTGCGCACATTCTTAACCTCACAGTCCAAGAAAGCTTAGAACAGACATCTGATATAATTACTAGAGTCCGTGAGATGATTCAGAATGTCAAGTTCTCACAAGAAAGGTTCGAAAAGTTTCAGGATACTGCAAAACTGTTGCAGATGGACCAAAAACTGCTAGTTCTTGATTCTCCTAATAACTGGCCGTCTACATACTTAATGTTTGATTCTGCATGTTACTATCATGATGTTCTCATGCGCCTTGCAGAACAGGAAGCACATTATGGTGCTTTTCTCACTGCGAAGGAGTGGGCCGATGTGAAAGCCCTCACTGAAATACTTGATGCGCTCTATCATAAGATGGAGAAGTTTCCTGTGGAAAATCCGACTGCAAATCTCTATTTTAATGACATGTGTGAGGTGCATGTTCTTTTGAATACCTGGCGTAATAGTCCATCTCCTGTTGTTGCACAAGTGGCTGACCGAATGCTGACAAAATTTGAGGGGTACTGGGATCTTACTAGACCAGTAATGGCATTCGCATCTATTCTGGATCCTCGATATAAGATGAAGTCTGTTGAGTACTTCTGTAGACTCATTTATGCTGCTGATCAATTTAGAGCAAAGACAACAATAGATGACATTCGGCAGAGTTTTACCAATTTGTGCAGTGAATATGAACAGTCAGGAAATTCATTCAAGAATCCATCTGCTCTCTTCTACTCTGCAACCAGTAATTCTTGCATGAGTTCGGTATACAGCAATGGTGATGATTTTAAGACCTTCTCCCGTATCACATTATCTGATGCTCGAAGGGGACTTGATCAATATATACAGGAGACGTCATCAGGCCAATCCTTTAAGTCTGACTTAGACATGTACCTTGAGGAACCGGTCTATCGCCAAAAGGAAGGGCATTTAGATAATTTTGACATCCTGGGATGGTGGAAGTCCTTTGCAGCAAAGTATCCTGTCCTTTCTCAAATGGCTCGTGATATTTTAGCTGTCCCTGTATCTATCATCCCATTGGACAGTGATGCTCGGACATTAAATGAGTATCTCAGTACCATGGACCCTTCAACAGTGCAGGGATTGGTATGTGCGCAAGATTGGTTGCGGGAAGATACAGAAGTTGCTAGTTCAGACGGTCATGCAGATGACAAAGCGGCACGTGGTGATGAACTTATCGTGTTACCAAAATAG
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Protein seq | MLEPTAMEVPITSSVNTAVVPVPVVHNPRARKLRSAVWQDFTKERRADGSCVAVCNHCKKQLTATSRSGTTHLRNHLAICTTTSTRRAGKRRKLIVRRILHNKTSTDGQSGDGHASGEDHDNDGTHFDQELSRRDLAHMIVQHGYRFSIVDDVGFQKFVKNLQPRFRMVSYETVRADSMTIYESEKLKLQDALLKIPCRLSISVDMWRSNTQMDFLCLTCHYIDHANDEWKVRKKILNFVHVEAPFTDDQIASLILEKLREWGIDRKLAAIVLDNCASGEIVARELLVVLQPRRLLLLNGNLFQVRSCAHILNLTVQESLEQTSDIITRVREMIQNVKFSQERFEKFQDTAKLLQMDQKLLVLDSPNNWPSTYLMFDSACYYHDVLMRLAEQEAHYGAFLTAKEWADVKALTEILDALYHKMEKFPVENPTANLYFNDMCEVHVLLNTWRNSPSPVVAQVADRMLTKFEGYWDLTRPVMAFASILDPRYKMKSVEYFCRLIYAADQFRAKTTIDDIRQSFTNLCSEYEQSGNSFKNPSALFYSATSNSCMSSVYSNGDDFKTFSRITLSDARRGLDQYIQETSSGQSFKSDLDMYLEEPVYRQKEGHLDNFDILGWWKSFAAKYPVLSQMARDILAVPVSIIPLDSDARTLNEYLSTMDPSTVQGLVCAQDWLREDTEVASSDGHADDKAARGDELIVLPK
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.498844 | 0.574092 | 0.360728 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0698300 | RBH | 0.749589 | 0.867366 | 1.800701 |
Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | RAP-db | Os01g0698300 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0030320 | RBH | 0.316504 | 4.307238 | 2.775368 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0030290 | RBH | 2.456088 | 9.163258 | 11.191405 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0479800 | RBH | 4.7711085 | 8.7395205 | 5.3763935 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028951 | RBH | 0.108553 | 0.431461 | 0.467108 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0492800 | SBH | 0.2501715 | 1.59472 | 1.1322495 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G029820 | RBH | 0.612182 | 0.622414 | 1.132290 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0029500 | RBH | 0.728323 | 3.914738 | 2.768139 |