Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0025800 | OGI:04046690 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:26241440-26242051 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cacaaccaaaaaattattctgaaggtctacaggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagggctcgaatagaaaaatagaagcagactcaagttTCGAAGtaaTtacacataataaaaaaatggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgatacaatccacgtcataatccatattggattccccaattTAttaaagaaaaaaggagcaatcgaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattgggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattcCgaaaggcaatgaaaaaagccattgaattaactaaaaaaacagatataaagggagtaaaaGaaaaaattgcaggccgtctcggaaaagaaattgcgcgtgccgaatgcatcaaaaaaggtagacTtcccctccaaacaattcgcgctaaaattgattattgctgctatccaattcgaactatctatggagtattag
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| CDS seq | atggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgatacaatccacgtcataatccatattggattccccaattTAttaaagaaaaaaggagcaatcgaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattgggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattcCgaaaggcaatgaaaaaagccattgaattaactaaaaaaacagatataaagggagccgtctcggaaaagaaattgcgcgtgccgaatgcatcaaaaaaggtagacTtcccctccaaacaattcgcgctaaaattgattattgctgctatccaattcgaactatctatggagtattag
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| Protein seq | MDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLLKKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGAVSEKKLRVPNASKKVDFPSKQFALKLIIAAIQFELSMEY |
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| Function | 30S ribosomal protein S3, chloroplastic [UniProtKB/Swiss-Prot:P0C485] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0025800 | OsNaBo_01g0025800.01 | Chr01 | 26241589 | 26242051 | + | NAM | ||
| CDS seq | atggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgatacaatccacgtcataatccatattggattccccaattTAttaaagaaaaaaggagcaatcgaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattgggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattcCgaaaggcaatgaaaaaagccattgaattaactaaaaaaacagatataaagggagccgtctcggaaaagaaattgcgcgtgccgaatgcatcaaaaaaggtagacTtcccctccaaacaattcgcgctaaaattgattattgctgctatccaattcgaactatctatggagtattag
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| Protein seq | MDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLLKKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGAVSEKKLRVPNASKKVDFPSKQFALKLIIAAIQFELSMEY |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0025800 | OsNaBo_01g0025800.02 | Chr01 | 26241440 | 26241888 | + | IsoSeq | ||
| CDS seq | cacaaccaaaaaattattctgaaggtctacaggaagataaaaaaatacggaattgtatcaagaactatatacaaaagaataggaaaaagggctcgaatagaa |
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| Protein seq | HNQKIILKVYRKIKKYGIVSRTIYKRIGKRARIE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 36.286644 | 107.593903 | 159.004700 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21346 | RBH | 12.276718 | 11.919299 | 4.676984 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026720 | RBH | 6.398159 | 15.291897 | 58.065765 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026760 | SBH | 12.826227 | 16.238354 | 50.727089 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0026580 | SBH | 0.000000 | 0.000000 | 41.064125 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020110 | SBH | 20.160227 | 3.098250 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007710 | SBH | 0.000000 | 0.0 | 8.603741 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0454500 | SBH | 86.916225 | 49.866743 | 28.7650445 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007480 | SBH | 35.726826 | 6.501042 | 41.509865 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227600 | RBH | 1028.5620725 | 264.4079285 | 242.036064 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007630 | SBH | 17.575420 | 1.935400 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007430 | SBH | 29.495934 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0021460 | SBH | 3.925312 | 0.0 | 18.279116 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007880 | SBH | 26.923641 | 49.076805 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026040 | RBH | 10.569579 | 13.378501 | 30.284914 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026270 | SBH | 49.963943 | 186.312668 | 281.524078 |
