Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_04g0007880 | OGI:04046690 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr04:14974806-14975271 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaatactccatagatagttcgaattggatagcagcaataatcaattttagcgcgaattgtttggaggggaagtctaccttttttgatgcattcggcacgcgcaatttcttttcccgcgagacggcctgcaatttttacttttactccctttatatctgTttttttagttaattcaatggcttttttcattgcctttcggaatgaaactctattttttaattggaaagctatatattctgcaagaatgttaggttgtctataaggttctttcactttttcgatcccaatattaagtctctggtttacagaattaacttctttttgtagatctttctctaattcttcgattgctccttttttctttaataaattggggaatccaatatggattatgacgtggattgtatcgatttctttttgaatttctatatgtgtaattacttcggaacttgagcctgagtccat
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| CDS seq | atggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgatacaatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcgaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattgggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaactaaaaaaAcagatataaagggagtaaaagccgtctcgcgggaaaagaaattgcgcgtgccgaatgcatcaaaaaaggtagacttcccctccaaacaattcgcgctaaaattgattattgctgctatccaattcgaactatctatggagtattag
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| Protein seq | MDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLLKKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGVKAVSREKKLRVPNASKKVDFPSKQFALKLIIAAIQFELSMEY |
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| Function | 30S ribosomal protein S3, chloroplastic [UniProtKB/Swiss-Prot:P0C485] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_04g0007880 | OsLaMu_04g0007880.01 | Chr04 | 14974806 | 14975271 | - | NAM | ||
| CDS seq | atggactcaggctcaagttccgaagtaattacacatatagaaattcaaaaagaaatcgatacaatccacgtcataatccatattggattccccaatttattaaagaaaaaaggagcaatcgaagaattagagaaagatctacaaaaagaagttaattctgtaaaccagagacttaatattgggatcgaaaaagtgaaagaaccttatagacaacctaacattcttgcagaatatatagctttccaattaaaaaatagagtttcattccgaaaggcaatgaaaaaagccattgaattaactaaaaaaAcagatataaagggagtaaaagccgtctcgcgggaaaagaaattgcgcgtgccgaatgcatcaaaaaaggtagacttcccctccaaacaattcgcgctaaaattgattattgctgctatccaattcgaactatctatggagtattag
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| Protein seq | MDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLLKKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGVKAVSREKKLRVPNASKKVDFPSKQFALKLIIAAIQFELSMEY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 26.923641 | 49.076805 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16824 | RBH | 17.318314 | 12.998343 | 7.785769 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0005500 | RBH | 7.555978 | 16.327326 | 67.986908 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026760 | RBH | 12.826227 | 16.238354 | 50.727089 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0026580 | RBH | 0.000000 | 0.000000 | 41.064125 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020110 | RBH | 20.160227 | 3.098250 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007760 | SBH | 612.337646 | 250.229736 | 1495.301270 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0227100 | RBH | 721.3843995 | 324.9647215 | 236.208443 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007480 | RBH | 35.726826 | 6.501042 | 41.509865 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227600 | RBH | 1028.5620725 | 264.4079285 | 242.036064 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007630 | SBH | 17.575420 | 1.935400 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007430 | SBH | 29.495934 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0021460 | RBH | 3.925312 | 0.0 | 18.279116 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026500 | RBH | 4.988913 | 7.561723 | 14.436198 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026270 | RBH | 49.963943 | 186.312668 | 281.524078 |
